BAC Information

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BAC

Clone NameB6Ng01-046L06
Chromosome4 (Build37)7 (Build37)
Map Location 113,400,166 - 113,400,66659,196,645 - 59,197,828
singlet/doubletsingletsinglet
Overlap geneLOC242627
Upstream geneA030001H23Rik, LOC433745, LOC545668, LOC230622, LOC100040607
Downstream geneLOC100040625, A630098G03Rik, LOC666048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046L06.bB6Ng01-046L06.g
ACCDH871784DH871785
length9491,161
definitionDH871784|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L06, 5' end.DH871785|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,400,166 - 113,400,666)(59,196,645 - 59,197,828)
sequence
gaattctgggtgtaaatcctgcttcaactagctgcctgcttcaactagct
gcctgcttataagcgggtacagatagaagtgtgatgttgagttttgtggt
tatattattcctctgggaggtcaaaataaaggtttttctagttactggct
caaggaaatgctgatttgggaaaaaagattttgtctttgtgtttttggaa
aaggtgatgaaggtatttacacctttcagatttatctggattagatagga
caaagggagacctccagaggactagattccagagaatcaaacaaaaaatt
tatcttgatgacattaaaattttgttttgaggtttatatattacagaata
tacagccttggtgaattttctcaccatacatgctaaactgacctgtttga
actcctgatgtcctggaattcaggtggatccagtcaaggcacagacattg
gagactaatccatccagttttccctactctttcccagcccgttcataata
tctcaaaactgacattcagcttgaagaagttatgaagaatcatcgaccta
gttccctaggctttgaggctggagagggttattaatagtttgtctttcca
gcattttcaacaaatgttgttggctcaactctcagttatcatgtagaatg
aaaattgatccattattatctccttatacaaagctcaaatctaagtggat
cagggaactccacataaaactaaagacacggaaacttgcagaggagaaag
tgggggaaagcctcaaatatgtgggtgcaaaaaattcctgaacagacagc
aatggcttgtgctgtaagatcaagaatagacaaatgggacctcataaaat
tgcaaagcttctgtaaggcaaaggacactgtcaataagaccaaaaagcaa
ccacagattgagaaaagatcttttaccaacccttaatcagatagggggc
gaattcaaaagcccaaggaagcatcggattctgggctcggtgctgacttt
tctgtgtcaggggcacaaacagtcttcagctttctcaggtaaagaagaat
ctccaaggaaacagtttccacctgtgattctgttctaatttcatcaaagc
tggctggcctttttgtttgtgttggaaatgagctgagcctgttgctgctc
taatagcatttttgcgattgttttagtatttttaagacaaagaatatgca
ccttgttcttgggaggtggccttcatccacctgttggtgaatataaaata
ttttctaatctatttatattttaaaatatgatgttttcacttactattga
tgtgcagttggcatgatcacagtgttgtggattcctccagacttaactag
gtttatattattctcatgagaacattcaacacaggcaggatttatacctt
aatggagctgagactccacagaagtctgtaacagcttagagggttgcctt
ccaaagtctttctggcctgttaggaaatctgaggttgttgtgaatcaatt
ctggtgatagaatagaatccatagaacaccatgtgtcttgtaacgattca
tcaattggtttataaatacaaaaaggtagaaatacaaaatgtggtagcca
aatatttatagtaactgtttattatggaacaaaagttacttaatagaata
gaggctgttgtggcattgtaaactgtttgttcttaaatcttacataagct
ttgcagctctcaaaatgcatctgatgcacagaatccttctctccagattc
tgaagggaggaaaaaaaaagaaataaaagaaaaagaatcacagtcttcac
tttatgacttaaaggcccaagttaacagacatgttgagtgtctatgactg
gaaatggcctgagtccgtgagggggagatttctccctagaaaaactgagt
gaactagtgagccgatcaacttaaccatgtccttcatgcagaaagagttg
ggtatgagtcaaaggacagcactgagccctcctctgttcagatcagaata
tcacatgaggaaaactgccttcctaagaacgtgtctgcctggtatacgtg
atctgtaagtgacaggcccacatcgcagtactatggcaaggtggactgct
gctgaattgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_113400166_113400666
seq2: B6Ng01-046L06.b_51_410

seq1  GGGTGTAAATCCTGCTTTGGCAACCTGCCTTTTATAAGGATTTATAGATA  50
      |||||||||||||||||   | | |||||                     
seq2  GGGTGTAAATCCTGCTTCAACTAGCTGCC---------------------  29

seq1  GACATATGAATCAATTTAATAAGGTCTGCAGGAGACTCATATTCTCTAAC  100
            ||  |||| |     ||  ||||                     
seq2  ------TGCTTCAACT-----AG--CTGC---------------------  45

seq1  GTAGTCTCCTTGGGAATTTGGGGTTAATATCCTGACATGACAAATTATAA  150
           || |||    ||  | || ||                        
seq2  -----CTGCTT----ATAAGCGGGTA------------------------  62

seq1  AGGCCTAAATAGAATAAAATATGTGTGATTTTGAGTATTTTGGTTATTTT  200
            | ||||||        ||||||| |||||| || ||||||   |
seq2  -----CAGATAGAA--------GTGTGATGTTGAGTTTTGTGGTTA---T  96

seq1  ATTGTTTCTCTGGGACAGAGAGCAAGCTACAGCTGTTCTTGGTTACTAGT  250
      ||| || ||||||    |||  |||  || || | ||  | |||||| | 
seq2  ATTATTCCTCTGG----GAGGTCAAAATAAAGGTTTTTCTAGTTACTGGC  142

seq1  TGAAGGATAGGCTGATTTGGG-GAATAGGTTTTCTCTTTGTGTTTTTGGA  299
      | ||||| | |||||||||||  || || |||| ||||||||||||||||
seq2  TCAAGGAAATGCTGATTTGGGAAAAAAGATTTTGTCTTTGTGTTTTTGGA  192

seq1  AATGGTGTTTAAGCTTTTTAAAGCTTCCAGAGTTACATGGATCATATTTT  349
      || |||| | ||| | |||| | ||| |||| |||  ||||| | ||   
seq2  AAAGGTGATGAAGGTATTTACACCTTTCAGATTTATCTGGATTAGATAGG  242

seq1  ATAAAGGGACACTCCCTGAATAACTAGATTCTAGAGCATAAAACAAAATG  399
      | ||||||| ||  || | |  ||||||||| |||| || ||||||||  
seq2  ACAAAGGGAGACCTCCAG-AGGACTAGATTCCAGAGAATCAAACAAAAAA  291

seq1  GTTTTCTTGATGATACTAAAAGAGTTTTTTTTTTGTTTGTTTGTTTTTTT  449
       || ||||||||| | |||||                             
seq2  TTTATCTTGATGACATTAAAA-----------------------------  312

seq1  TTTTTTTTTTTTTGAGATTTATATATTACAGAATATACAGCCTTGGTGAA  499
          |||| ||||||| |||||||||||||||||||||||||||||||||
seq2  ----TTTTGTTTTGAGGTTTATATATTACAGAATATACAGCCTTGGTGAA  358

seq1  TT  501
      ||
seq2  TT  360

seq1: chr7_59196645_59197828
seq2: B6Ng01-046L06.g_68_1228

seq1  GAATTCAAAAGCCCAAGGAAGCATCGGATTCTGGGCTCGGTGCTGACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGCCCAAGGAAGCATCGGATTCTGGGCTCGGTGCTGACTTT  50

seq1  TCTGTGTCAGGGGCACAAACAGTCTTCAGCTTTCTCAGGTAAAGAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCAGGGGCACAAACAGTCTTCAGCTTTCTCAGGTAAAGAAGAAT  100

seq1  CTCCAAGGAAACAGTTTCCACCTGTGATTCTGTTCTAATTTCATCAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGAAACAGTTTCCACCTGTGATTCTGTTCTAATTTCATCAAAGC  150

seq1  TGGCTGGCCTTTTTGTTTGTGTTGGAAATGAGCTGAGCCTGTTGCTGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCCTTTTTGTTTGTGTTGGAAATGAGCTGAGCCTGTTGCTGCTC  200

seq1  TAATAGCATTTTTGCGATTGTTTTAGTATTTTTAAGACAAAGAATATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCATTTTTGCGATTGTTTTAGTATTTTTAAGACAAAGAATATGCA  250

seq1  CCTTGTTCTTGGGAGGTGGCCTTCATCCACCTGTTGGTGAATATAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCTTGGGAGGTGGCCTTCATCCACCTGTTGGTGAATATAAAATA  300

seq1  TTTTCTAATCTATTTATATTTTAAAATATGATGTTTTCACTTACTATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATCTATTTATATTTTAAAATATGATGTTTTCACTTACTATTGA  350

seq1  TGTGCAGTTGGCATGATCACAGTGTTGTGGATTCCTCCAGACTTAACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGTTGGCATGATCACAGTGTTGTGGATTCCTCCAGACTTAACTAG  400

seq1  GTTTATATTATTCTCATGAGAACATTCAACACAGGCAGGATTTATACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATTATTCTCATGAGAACATTCAACACAGGCAGGATTTATACCTT  450

seq1  AATGGAGCTGAGACTCCACAGAAGTCTGTAACAGCTTAGAGGGTTGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGCTGAGACTCCACAGAAGTCTGTAACAGCTTAGAGGGTTGCCTT  500

seq1  CCAAAGTCTTTCTGGCCTGTTAGGAAATCTGAGGTTGTTGTGAATCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCTTTCTGGCCTGTTAGGAAATCTGAGGTTGTTGTGAATCAATT  550

seq1  CTGGTGATAGAATAGAATCCATAGAACACCATGTGTCTTGTAACGATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGATAGAATAGAATCCATAGAACACCATGTGTCTTGTAACGATTCA  600

seq1  TCAATTGGTTTATAAATACAAAAAGGTAGAAATACAAAATGTGGTAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGGTTTATAAATACAAAAAGGTAGAAATACAAAATGTGGTAGCCA  650

seq1  AATATTTATAGTAACTGTTTATTATGGAACAAAAGTTACTTAATAGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATAGTAACTGTTTATTATGGAACAAAAGTTACTTAATAGAATA  700

seq1  GAGGCTGTTGTGGCATTGTAAACTGTTTGTTCTTAAATCTTACATAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTTGTGGCATTGTAAACTGTTTGTTCTTAAATCTTACATAAGCT  750

seq1  TTGCAGCTCTCAAAATGCATCTGATGCACAGAATCCTTCTCTCCAGATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCTCTCAAAATGCATCTGATGCACAGAATCCTTCTCTCCAGATTC  800

seq1  TGAAGGGAGGAAAAAAAAAAGAAATAAAAGAAAAAAGAATCACAGTCTTC  850
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  TGAAGGGAGG-AAAAAAAAAGAAATAAAAG-AAAAAGAATCACAGTCTTC  848

seq1  ACTTTATGACTTAAAAGGCCCAAGTTAACAGACATGTTGAGTGTCTATGA  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGACTT-AAAGGCCCAAGTTAACAGACATGTTGAGTGTCTATGA  897

seq1  CTGGAAATGGCCTGGAGTCCGTGGAGGGGGAGATTTCTCCCTAGAGAAAC  950
      ||||||||||||| |||||||| |||||||||||||||||||||| ||||
seq2  CTGGAAATGGCCT-GAGTCCGT-GAGGGGGAGATTTCTCCCTAGAAAAAC  945

seq1  TGAGTGAACTAGTGAAGCCGAATCAACTTAACCATGTCCTTCATGGCAGA  1000
      |||||||||||||| ||||| ||||||||||||||||||||||| |||||
seq2  TGAGTGAACTAGTG-AGCCG-ATCAACTTAACCATGTCCTTCAT-GCAGA  992

seq1  GAGAAGTTTGGGTAATGAGTCAAAAGGACAGCAACTGAGCCC-CCTCTGT  1049
       |||   |||||| ||||||| |||||||||| ||||||||| |||||||
seq2  AAGA--GTTGGGT-ATGAGTC-AAAGGACAGC-ACTGAGCCCTCCTCTGT  1037

seq1  CAGGATCAG-ATATCACCATGAGGAAAACTGCCTCCCTAGAGACGTGTCC  1098
         |||||| |||||| ||||||||||||||||| ||||   |||||| |
seq2  TCAGATCAGAATATCA-CATGAGGAAAACTGCCTTCCTAAGAACGTGT-C  1085

seq1  TGCACTTGTATACAGTGACATCTGTTAAAGTAGCAAGCCACCACCGCAGG  1148
      ||| || |||||| |||  ||||||  ||||  || |||  || ||||| 
seq2  TGC-CTGGTATAC-GTG--ATCTGT--AAGTGACAGGCCCACATCGCAGT  1129

seq1  ACATAGGCAAGGTTTGACATTGGCTGCTGAATTGAC  1184
      ||   ||||||| | |||    ||||||||||||||
seq2  ACTATGGCAAGG-TGGAC---TGCTGCTGAATTGAC  1161