BAC Information

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BAC

Clone NameB6Ng01-046O06
Chromosome4 (Build37)
Map Location 143,994,397 - 144,132,487
singlet/doubletdoublet
Overlap genePramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232
Upstream gene4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009
Downstream geneLOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046O06.bB6Ng01-046O06.g
ACCDH871915DH871916
length1,0751,144
definitionDH871915|Mus musculus domesticus DNA, BAC clone: B6Ng01-046O06, 5' end.DH871916|Mus musculus domesticus DNA, BAC clone: B6Ng01-046O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,994,397 - 143,995,481)(144,131,327 - 144,132,487)
sequence
gaattccagacagggtctggaactggaagccgccgcccaccttgtctggc
ccttggctcagttggctatcgcttagactttccccttccccctctctcgt
cagcagcctgctgctccagctgctttgcctgtagagcaagtttggctcca
cccctgccacggaccctgcttgttgccatccccctctgctcctaggctct
actctcgctgcgggaggggtgggtctggctctgaaaagctgccttcccgt
ctctctctctgcttctctgcctttggtggggtgcgccacaagcccgttgc
caagaaactttgggcccttactcccccccccccccccaacctagaactct
cagctgctaccaggaagtcccggcctgggcggtgccaccatgtggtctat
gcagtcaaagaggcccaagtgcttacctatccatgctgcctgcgtgctca
gtttacttcacaggcttaaatctgcctgtacaaactcgttttctgtcacc
acaatgttatgctacggctgccagttctcttatactggttctagccatat
acttctttgctaaagttacctaagattttcatttctatcctgtctcaata
tgatttttactactatcactgaattctattcagttataaccaatctacat
agtgctcaatcttgtcagaagtttgttaactattaagattatgacagaca
gaattcccaaaagcctctaaggtttctcccacacggtctcagaagatggg
gatgtagctacaggatgccacctggactgtgatatgacaatcactgaaat
aaaatacacagtggacaaaactggatactctgagtcaaatgacttaacta
aaataaaggtaagccatttctcatgtcacacgtacccattccacagagaa
aaagccccgtgtcttctgtgcttgaaagccagactgacgcccagttgcat
tgagacatagagatcacagagagcgtggctagtggactctgtcattttaa
ataatatataactggatactaactgctagattttgtttattttcagactt
ctggctaacattgacagctaaagaa
gaattccaagttttgagatcagaaaaggttcatggctccacagaactaca
tgcctacaaactacttcaaccaaaactttactgtagtagagacagatgga
cagcatttctttaaaaacacatttcttaggccagctggagcctgtgggat
ctagacttagaccagtgactgtgatgtcatgaacaatgaggtcaccattt
tatccaaaggaacatgtttccacaaagtttcatcaatataggtatggctt
tctcactgacagtgtgactgggtgttggcatctgttcttcacagttgaac
tgctcaaaaattcaagataagagaggaagaacattggagagcatgaaaat
gctgacagaacagatgaaaagcaggtggtaactgaaggccatgcagcaca
aaggaaagcagaccaagacatctattcccctctccaacaggatttgggaa
gctaaaaactcatacttaatgtgagccaagagtattagttagggttattt
tcactgtgatgaaacaccatgaccaaaagcaacttggggaagatttattt
tactcacagttccatactttgaaaacagtgagggcatgaactcaagcagg
acagaaatctggaagcaggtgctgagacagagaccacgaagaggtggtcc
ttgatgactccatggctcgctcagcctgctttcttacagaacccaggacc
ttccaggccaaggatggcaccacttacaatgagctgagtcctctcccatc
tatcattaatttagaaaatgttctaaggctgggtcttatggagacatttt
ctcaattgatgttccctcctttcagatgactctagctgtgtcaagttgac
ataaaactacccaggacactagaatattggaataataagaggctgtcagc
tcagttgcagggcaaatttaaggttctcacatgccttaaaatctctaaat
cagctggagaacttggtttgactgtggacttccatgagtaataatttctt
tgaaagctaggtaggaactcaggaagtctaaggaaatttccttaggcttg
ggaatacaacaacctaaagctcaggaatcctgagctctacgaaggttgga
tgccttctctcaggtttcataatataaagatgtcctagagacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143994397_143995481
seq2: B6Ng01-046O06.b_45_1119

seq1  GAATTCCAGACAGGGTCTGGAACTGGAAGCCGCCGCCCACCTTGTCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAGGGTCTGGAACTGGAAGCCGCCGCCCACCTTGTCTGGC  50

seq1  CCTTGGCTCAGTTGGCTATCGCTTAGACTTTCCCCTTCCCCCTCTCTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCTCAGTTGGCTATCGCTTAGACTTTCCCCTTCCCCCTCTCTCGT  100

seq1  CAGCAGCCTGCTGCTCCAGCTGCTTTGCCTGTAGAGCAAGTTTGGCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCTGCTGCTCCAGCTGCTTTGCCTGTAGAGCAAGTTTGGCTCCA  150

seq1  CCCCTGCCACGGACCCTGCTTGTTGCCATCCCCCTCTGCTCCTAGGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCACGGACCCTGCTTGTTGCCATCCCCCTCTGCTCCTAGGCTCT  200

seq1  ACTCTCGCTGCGGGAGGGGTGGGTCTGGCTCTGAAAAGCTGCCTTCCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCGCTGCGGGAGGGGTGGGTCTGGCTCTGAAAAGCTGCCTTCCCGT  250

seq1  CTCTCTCTCTGCTTCTCTGCCTTTGGTGGGGTGCGCCACAAGCCCGTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTGCTTCTCTGCCTTTGGTGGGGTGCGCCACAAGCCCGTTGC  300

seq1  CAAGAAACTTTGGGCCCTTACTCCCCCCCCCCCCCCCAACCTAGAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACTTTGGGCCCTTACTCCCCCCCCCCCCCCCAACCTAGAACTCT  350

seq1  CAGCTGCTACCAGGAAGTCCCGGCCTGGGCGGTGCCACCATGTGGTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTACCAGGAAGTCCCGGCCTGGGCGGTGCCACCATGTGGTCTAT  400

seq1  GCAGTCAAAGAGGCCCAAGTGCTTACCTATCCATGCTGCCTGCGTGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAAAGAGGCCCAAGTGCTTACCTATCCATGCTGCCTGCGTGCTCA  450

seq1  GTTTACTTCACAGGCTTAAATCTGCCTGTACAAACTCGTTTTCTGTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTCACAGGCTTAAATCTGCCTGTACAAACTCGTTTTCTGTCACC  500

seq1  ACAATGTTATGCTACGGCTGCCAGTTCTCTTATACTGGTTCTAGCCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTATGCTACGGCTGCCAGTTCTCTTATACTGGTTCTAGCCATAT  550

seq1  ACTTCTTTGCTAAAGTTACCTAAGATTTTCATTTCTATCCTGTCTCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTGCTAAAGTTACCTAAGATTTTCATTTCTATCCTGTCTCAATA  600

seq1  TGATTTTTACTACTATCACTGAATTCTATTCAGTTATAACCAATCTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTACTACTATCACTGAATTCTATTCAGTTATAACCAATCTACAT  650

seq1  AGTGCTCAATCTTGTCAGAAGTTTGTTAACTATTAAGATTATGACAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCAATCTTGTCAGAAGTTTGTTAACTATTAAGATTATGACAGACA  700

seq1  GAATTCCCAAAAGCCTCTAAGGTTTCTCCCACACGGTCTCAGAAGATGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAAGCCTCTAAGGTTTCTCCCACACGGTCTCAGAAGATGGG  750

seq1  GATGTAGCTACAGGATGCCACCTGGACTGTGATATGACAATCACTGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGCTACAGGATGCCACCTGGACTGTGATATGACAATCACTGAAAT  800

seq1  AAAATACACAGTGGACAAAACTGGATACTCTGAGTCAAATGACTTAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACACAGTGGACAAAACTGGATACTCTGAGTCAAATGACTTAACTA  850

seq1  AAATAAAGGTAAGCCATTTCTCATGTCACACGTACCCATTCCACAGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGGTAAGCCATTTCTCATGTCACACGTACCCATTCCACAGAGAA  900

seq1  AAAGCCCCGTGTCTTCTGTGCTTGAAAGCCAGACTGACCGCCCAAGTTGC  950
      ||||||||||||||||||||||||||||||||||||| ||||| ||||| 
seq2  AAAGCCCCGTGTCTTCTGTGCTTGAAAGCCAGACTGA-CGCCC-AGTTG-  947

seq1  CATTGAGACCATAGAGATCACAGAGAACCGTTGGCTAGTGGACTCTGTCA  1000
      |||||||| ||||||||||||||||| |   |||||||||||||||||||
seq2  CATTGAGA-CATAGAGATCACAGAGAGC--GTGGCTAGTGGACTCTGTCA  994

seq1  TTTTTAAAATAATATATAACTGGTATA-TAACTGCTAGATTTTTGTTTAT  1049
      ||||  ||||||||||||||||| ||| ||||||||||| ||||||||||
seq2  TTTT--AAATAATATATAACTGG-ATACTAACTGCTAGA-TTTTGTTTAT  1040

seq1  TTCTCAGACTTCTGGCT-ACATTGACAGCTAGAAGAA  1085
      || |||||||||||||| ||||||||||||| |||||
seq2  TT-TCAGACTTCTGGCTAACATTGACAGCTA-AAGAA  1075

seq1: chr4_144131327_144132487
seq2: B6Ng01-046O06.g_68_1211 (reverse)

seq1  CTGTCTCTAAGCAATCCTTATTATTTATGAAACCTGAGAAGGGAAGTGCA  50
      ||||||||| |  ||| ||||   |||||||||||||||   |||| |||
seq2  CTGTCTCTAGGACATCTTTAT--ATTATGAAACCTGAGA---GAAG-GCA  44

seq1  TCATACTTCTGCTGAGTTTCAGGGATTTCCTGAAGCTTTTGAGTTGTTTA  100
      ||  || |  |  |||  |||||   |||||| |||||| | ||||||  
seq2  TCCAACCTTCGTAGAG-CTCAGG--ATTCCTG-AGCTTTAG-GTTGTTGT  89

seq1  TTTCCAAAGCCTAAAGGAAATTTCCTTTAGAACTTCCTGAG-TCTTAACT  149
       |||| |||||| |||||||||||| |||| |||||||||| || || ||
seq2  ATTCCCAAGCCT-AAGGAAATTTCC-TTAG-ACTTCCTGAGTTCCTACCT  136

seq1  AGCTTTTCAAAGGAAATTATTACTCATTGGAAGT-CACAGTCAAACCAAG  198
      ||| ||||||| |||||||||||||| ||||||| |||||||||||||||
seq2  AGC-TTTCAAA-GAAATTATTACTCA-TGGAAGTCCACAGTCAAACCAAG  183

seq1  TTCTCCAGCTGATTTAAGAGATTTTAAGGCATGTGAGAACCTTAAATTTG  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGCTGATTT-AGAGATTTTAAGGCATGTGAGAACCTTAAATTTG  232

seq1  CCCTGCAACTGAGACTGACAGCCTCTTATTATTCCAATATTCTAGTGTCC  298
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAACTGAG-CTGACAGCCTCTTATTATTCCAATATTCTAGTGTCC  281

seq1  TGGGTAGTTTTATGTCAACTTGACACAGCTAGAGTCATCTGAAAGGAGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGTTTTATGTCAACTTGACACAGCTAGAGTCATCTGAAAGGAGGG  331

seq1  AACATCAATTGAGAAAATGTCTCCATAAGACCCAGCTTTAGAACATTTTC  398
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACATCAATTGAGAAAATGTCTCCATAAGACCCAGCCTTAGAACATTTTC  381

seq1  TAAATTAATGATAGATGGGAGAGGACTCAGCTCATTGTAAGTGGTGCCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATGATAGATGGGAGAGGACTCAGCTCATTGTAAGTGGTGCCAT  431

seq1  CCTTGGCCTGGAAGGTCCTGGGTTCTGTAAGAAAGCAGGCTGAGCGAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCCTGGAAGGTCCTGGGTTCTGTAAGAAAGCAGGCTGAGCGAGCC  481

seq1  ATGGAGTCATCAAGGACCACCTCTTCGTGGTCTCTGTCTCAGCACCTGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTCATCAAGGACCACCTCTTCGTGGTCTCTGTCTCAGCACCTGCT  531

seq1  TCCAGATTTCTGTCCTGCTTGAGTTCATGCCCTCACTGTTTTCAAAGTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTTCTGTCCTGCTTGAGTTCATGCCCTCACTGTTTTCAAAGTAT  581

seq1  GGAACTGTGAGTAAAATAAATCTTCCCCAAGTTGCTTTTGGTCATGGTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGTGAGTAAAATAAATCTTCCCCAAGTTGCTTTTGGTCATGGTGT  631

seq1  TTCATCACAGTGAAAATAACCCTAACTAATACTCTTGGCTCACATTAAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACAGTGAAAATAACCCTAACTAATACTCTTGGCTCACATTAAGT  681

seq1  ATGAGTTTTTAGCTTCCCAAATCCTGTTGGAGAGGGGAATAGATGTCTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTTTAGCTTCCCAAATCCTGTTGGAGAGGGGAATAGATGTCTTG  731

seq1  GTCTGCTTTCCTTTGTGCTGCATGGCCTTCAGTTACCACCTGCTTTTCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTTCCTTTGTGCTGCATGGCCTTCAGTTACCACCTGCTTTTCAT  781

seq1  CTGTTCTGTCAGCATTTTCATGCTCTCCAATGTTCTTCCTCTCTTATCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGTCAGCATTTTCATGCTCTCCAATGTTCTTCCTCTCTTATCTT  831

seq1  GAATTTTTGAGCAGTTCAACTGTGAAGAACAGATGCCAACACCCAGTCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTGAGCAGTTCAACTGTGAAGAACAGATGCCAACACCCAGTCAC  881

seq1  ACTGTCAGTGAGAAAGCCATACCTATATTGATGAAACTTTGTGGAAACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGTGAGAAAGCCATACCTATATTGATGAAACTTTGTGGAAACAT  931

seq1  GTTCCTTTGGATAAAATGGTGACCTCATTGTTCATGACATCACAGTCACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTGGATAAAATGGTGACCTCATTGTTCATGACATCACAGTCACT  981

seq1  GGTCTAAGTCTAGATCCCACAGGCTCCAGCTGGCCTAAGAAATGTGTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAGTCTAGATCCCACAGGCTCCAGCTGGCCTAAGAAATGTGTTTT  1031

seq1  TAAAGAAATGCTGTCCATCTGTCTCTACTACAGTAAAGTTTTGGTTGAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATGCTGTCCATCTGTCTCTACTACAGTAAAGTTTTGGTTGAAG  1081

seq1  TAGTTTGTAGGCATGTAGTTCTGTGGAGCCATGAACCTTTTCTGATCTCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTAGGCATGTAGTTCTGTGGAGCCATGAACCTTTTCTGATCTCA  1131

seq1  AAACTTGGAATTC  1161
      |||||||||||||
seq2  AAACTTGGAATTC  1144