BAC Information

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BAC

Clone NameB6Ng01-047B07
Chromosome4 (Build37)12 (Build37)
Map Location 44,635,635 - 44,636,716111,436,550 - 111,437,348
singlet/doubletsingletsinglet
Overlap genePax5
Upstream geneLOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
Downstream gene5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047B07.bB6Ng01-047B07.g
ACCDH872040DH872041
length1,065637
definitionDH872040|Mus musculus domesticus DNA, BAC clone: B6Ng01-047B07, 5' end.DH872041|Mus musculus domesticus DNA, BAC clone: B6Ng01-047B07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,635,635 - 44,636,716)(111,436,550 - 111,437,348)
sequence
gaattcataagctatcaacactgatcaaaatgggacttcacagctgtgtc
aaaaaaaaggggggtggggtatgagtgagagcactcactggcaggagagc
gcagaagcggcgtggacgaagcagattggatgcccagcatcattggggcc
acccttggtcccctcccctcaccctggcatctccctcagccccagctctg
gtcccctggctaaatcaaatagctaaatcacaaaactgaggggccgcaaa
tcctccaagacgcccactccagcccggacttaatttattgcttgcactgc
ctgccttatttatcctgaggagcgcatggctctctctgctcgggcctcag
aggtgctcactccttccagaccatcacagcccacttgaggcaattgtgct
ggtctctctctctcaattttcccattactgggagtaagtactgttgggac
tctgtaatagcccgactgcagcccatatcaataacagatgaggtttaatc
gtccaacacaaaaattatttaggcgcagtaaggacattcaatgtcatttg
cataatggcatttctatcgtacgcacctaacccgtcttgcataaacaagg
ccttgggaccataaataataataaatcatgacgtctgcacgcctcttgtg
gtaataggagccactctttgtggaaattatttcagcaagaaatgggcact
gtaattttaaagacatgtggtgtggcgaggcccggtaaatcacgtgcatt
cgcacatgagccccaagagcagcctggggacctgccctcagcccacagtg
acaaactgagcaatgcagaataccaggcctccaggggaaaatatcccgag
cctctggaccagccactgtctcaggaaacagcagtgaaagggcagcaagt
ccagcaggagggagcatgggatttgacccacagagttcagggctgttgta
tcaggagccatcttgtccgggagatggagctcctcaggcagctatctttt
atctggcacattcatatctgagatagtcatggaagagagatcttgtggct
ggccacagaaggaca
gaattcctcacagcatgtatgtataaaccagaagacaatttctaggagtc
aattctctccttccaccatgcgggtcctggggctaaactctagacagcag
gcttggcagtgggtatccttacctgctgagccatccctgtcattttctag
agcatctctacttctctaattgattgcaaacctgggaaaaatgcttccta
cctatgaaaagacattttaggagccagtgaggtgacacagctggaagcac
acttgctgcacaagccagaccacctcactcatcttggagacttatgtcag
aagagaagtgacttgcaagcattgtcctctgacagacaggcagacataca
gacatacaggcaggcaggcaggcagaaagacaggcacacacacacacaca
cactcacacacacacacacacacacacacacacacaattttgaaggtgtt
ttaagatcatagactatctttttcccaagaaagcaatagatgagaggtaa
atagaggcctgagacttgaaccagaactccaaggacaggactatggagct
aggtatgactggatgtgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_44635635_44636716
seq2: B6Ng01-047B07.b_49_1113

seq1  GAATTCATAAGCTATCAACACTGATCAAAATGGGACTTCACAGCTGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGCTATCAACACTGATCAAAATGGGACTTCACAGCTGTGTC  50

seq1  AAAAAAAAGGGGGGTGGGGTATGAGTGAGAGCACTCACTGGCAGGAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGGGGGGTGGGGTATGAGTGAGAGCACTCACTGGCAGGAGAGC  100

seq1  GCAGAAGCGGCGTGGACGAAGCAGATTGGATGCCCAGCATCATTGGGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCGGCGTGGACGAAGCAGATTGGATGCCCAGCATCATTGGGGCC  150

seq1  ACCCTTGGTCCCCTCCCCTCACCCTGGCATCTCCCTCAGCCCCAGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGGTCCCCTCCCCTCACCCTGGCATCTCCCTCAGCCCCAGCTCTG  200

seq1  GTCCCCTGGCTAAATCAAATAGCTAAATCACAAAACTGAGGGGCCGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGGCTAAATCAAATAGCTAAATCACAAAACTGAGGGGCCGCAAA  250

seq1  TCCTCCAAGACGCCCACTCCAGCCCGGACTTAATTTATTGCTTGCACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAGACGCCCACTCCAGCCCGGACTTAATTTATTGCTTGCACTGC  300

seq1  CTGCCTTATTTATCCTGAGGAGCGCATGGCTCTCTCTGCTCGGGCCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTATTTATCCTGAGGAGCGCATGGCTCTCTCTGCTCGGGCCTCAG  350

seq1  AGGTGCTCACTCCTTCCAGACCATCACAGCCCACTTGAGGCAATTGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTCACTCCTTCCAGACCATCACAGCCCACTTGAGGCAATTGTGCT  400

seq1  GGTCTCTCTCTCTCAATTTTCCCATTACTGGGAGTAAGTACTGTTGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTCTCTCTCAATTTTCCCATTACTGGGAGTAAGTACTGTTGGGAC  450

seq1  TCTGTAATAGCCCGACTGCAGCCCATATCAATAACAGATGAGGTTTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATAGCCCGACTGCAGCCCATATCAATAACAGATGAGGTTTAATC  500

seq1  GTCCAACACAAAAATTATTTAGGCGCAGTAAGGACATTCAATGTCATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACACAAAAATTATTTAGGCGCAGTAAGGACATTCAATGTCATTTG  550

seq1  CATAATGGCATTTCTATCGTACGCACCTAACCCGTCTTGCATAAACAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGGCATTTCTATCGTACGCACCTAACCCGTCTTGCATAAACAAGG  600

seq1  CCTTGGGACCATAAATAATAATAAATCATGACGTCTGCACGCCTCTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGACCATAAATAATAATAAATCATGACGTCTGCACGCCTCTTGTG  650

seq1  GTAATAGGAGCCACTCTTTGTGGAAATTATTTCAGCAGGAAATGGGCACT  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTAATAGGAGCCACTCTTTGTGGAAATTATTTCAGCAAGAAATGGGCACT  700

seq1  GTAATTTTAAAGACATGTGGTGTGGCGAGGCCCGGTAAATCACGTGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTAAAGACATGTGGTGTGGCGAGGCCCGGTAAATCACGTGCATT  750

seq1  CGCACATGAGCCCCAAGAGCAGCCTGGGGACCTGCCCTCAGCCCACAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACATGAGCCCCAAGAGCAGCCTGGGGACCTGCCCTCAGCCCACAGTG  800

seq1  ACAAACTGAGCAATGCAGAATACCAGGCCTCCAGGGGAAAATATCCCGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGAGCAATGCAGAATACCAGGCCTCCAGGGGAAAATATCCCGAG  850

seq1  CCTCTGGACCAGCCACTGTCCCAGGAAACAGCAGGTGAAAGGGGCAGCAA  900
      |||||||||||||||||||| |||||||||||| |||||| |||||||||
seq2  CCTCTGGACCAGCCACTGTCTCAGGAAACAGCA-GTGAAA-GGGCAGCAA  898

seq1  GTCCAGCAGGAGGGAGCATGGGATTTGAACCCACAGGAGTTTCAAGGCCT  950
      ||||||||||||||||||||||||||| ||||||| ||| |||| |||  
seq2  GTCCAGCAGGAGGGAGCATGGGATTTG-ACCCACA-GAG-TTCAGGGCTG  945

seq1  GTGTATCAGGAGCCATCTTTGTTCCGGGAGAATGGAAGCTCCCTCAGGGC  1000
       ||||||||||||||||||   |||||||| |||| |||| ||||| |||
seq2  TTGTATCAGGAGCCATCTT--GTCCGGGAG-ATGG-AGCT-CCTCA-GGC  989

seq1  AGCTATCTTTTATCTGGCACATTCCATATCCTGAAGATAAGTCATGAGAG  1050
      ||||||||||||||||||||||| ||||| ||| |||| ||||||| || 
seq2  AGCTATCTTTTATCTGGCACATT-CATAT-CTG-AGAT-AGTCATG-GAA  1034

seq1  AAGAGATCTTGTGGCTGGGCCACAGAAGGACA  1082
       ||||||||||||||| |||||||||||||||
seq2  GAGAGATCTTGTGGCT-GGCCACAGAAGGACA  1065

seq1: chr12_111436550_111437348
seq2: B6Ng01-047B07.g_543_703 (reverse)

seq1  ACACACTCACACATACACACACACACACACACACACACACACACACACAC  50
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACACACAC  50

seq1  ACACACACACACACACACTATGGAAACAAGAGCCAGGAGCATGACCCAGC  100
      ||||||||||||||||||||        | | ||||   ||| ||| || 
seq2  ACACACACACACACACACTA-------CACATCCAG--TCAT-ACCTAG-  89

seq1  AGGTTAAAACATCTACTGCATATGCCTGAAGACCTATAAGAGCT-----T  145
                     || ||||  |||   | |||   ||  ||      
seq2  ---------------CTCCATAGTCCT---GTCCTTGGAGTTCTGGTTCA  121

seq1  AATCTCATGGAGGT-GTTATCTGTAATC--CCACCATCTTTTAATAACGT  192
      | ||||| |    |  ||| || | |||     |  ||||          
seq2  AGTCTCAGGCCTCTATTTACCTCTCATCTATTGCTTTCTT----------  161

seq1  AGGAGGCTGAGATAGAAGACTTCCCTTGAAGGTCATAGCCAGCTAGCCTG  242
                                                        
seq2  --------------------------------------------------  161

seq1  GAAGAGATGTCACATGGGATAAAGCAAAAGAGACTCTGCCAGGTGAGGAC  292
                                                        
seq2  --------------------------------------------------  161

seq1  TGACACCCGAGGCTGTCCTTGGTCCTCATGTGTGCACAAGGTAACAGACA  342
                                                        
seq2  --------------------------------------------------  161

seq1  CATACCTCTTTGCCCTACGTGTACACATGAGCACACATATATAACACACA  392
                                                        
seq2  --------------------------------------------------  161

seq1  CACACACAGGAATGAAAACGTTTAAAGAAGAATGAGTAGATCTTGCCTCG  442
                                                        
seq2  --------------------------------------------------  161

seq1  TCCGTACTCTCCCACATCCTCACCACCATCAATAAGGAGACAAGACCTCA  492
                                                        
seq2  --------------------------------------------------  161

seq1  GGGCCACATCCCACCTCATCATAGACCACCTCTACTGCCTAGACATGGCC  542
                                                        
seq2  --------------------------------------------------  161

seq1  ATCCCCTCCCTAGTCCTCAGTCATTTACTCACAAAGTGGATGGAAAGCTA  592
                                                        
seq2  --------------------------------------------------  161

seq1  CCACCCACCTCCTGGGGCCTGCTGAAGGCTCGCTGAAATAAGGGAACTCA  642
                                                        
seq2  --------------------------------------------------  161

seq1  GAATGAGATTTGTCATGTTTTGTGTGTCTGATGATGACATAAATGATGAC  692
                                                        
seq2  --------------------------------------------------  161

seq1  ATAAACAGCCATTGCCTGGTCTTCTAGAAGCATATACCACTGTCTGTTTT  742
                                                        
seq2  --------------------------------------------------  161

seq1  TCTTTTTATTTAATGCCCCCCAAACGGGCCACGCTTTGTCTCATCTATTG  792
                                                        
seq2  --------------------------------------------------  161

seq1  CTTTCTT  799
             
seq2  -------  161