MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-047E19
Chromosome	4 (Build37)
Map Location	33,094,044 - 33,095,188
singlet/doublet	singlet
Overlap gene	Rragd
Upstream gene	Map3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298
Downstream gene	4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt, LOC100041919, LOC100041924, Cnr1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Map3k7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26409 MGI:1346877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665218 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665218
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC665228 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665228
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC665232 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665232
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 Proteins pseudo : _no_value

name	Bach2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12014 MGI:894679
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gja10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14610 MGI:1339969
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Casp8ap2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26885 MGI:1349399
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mdn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100019 MGI:1926159
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lyrm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108755 MGI:1917573
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankrd6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140577 MGI:2154278
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	LOC665298 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665298
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 1203 ESTs, 6 Proteins

name	Rragd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52187 MGI:1098604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933421O10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71073 MGI:1918323
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Ube2j1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56228 MGI:1926245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039142 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039142
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	Gabrr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14409 MGI:95626
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gabrr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14408 MGI:95625
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acy1l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242377 MGI:2685270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Srrp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:272009 MGI:2661424
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pnrc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108767 MGI:1917838
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rngtt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24018 MGI:1329041
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041919 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041919
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100041924 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041924
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Cnr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12801 MGI:104615
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Map3k7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802561 GeneID:26409 MGI:1346877
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen activated protein kinase kinase kinase 7 transcript_id : NM_172688.2

name	Bach2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:24762242 GeneID:12014 MGI:894679
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BTB and CNC homology 2 transcript_id : NM_007521.2

name	Gja10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117168288 GeneID:14610 MGI:1339969
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gap junction membrane channel protein alpha 10 transcript_id : NM_010289.2

name	Casp8ap2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753287 GeneID:26885 MGI:1349399
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : caspase 8 associated protein 2 transcript_id : NM_011997.1

name	Mdn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487132 GeneID:100019 MGI:1926159
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : midasin homolog (yeast) transcript_id : NM_001081392.1

name	Lyrm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801833 GeneID:108755 MGI:1917573
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LYR motif containing 2 transcript_id : NM_175364.3

name	Ankrd6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60218881 GeneID:140577 MGI:2154278
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 6 transcript_id : NM_001012451.1

name	Ankrd6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60218879 GeneID:140577 MGI:2154278
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 6 transcript_id : NM_001012450.1

name	Ankrd6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:60218878 GeneID:140577 MGI:2154278
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 6 transcript_id : NM_080471.3

name	LOC665298 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252278 GeneID:665298
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 929 ESTs, 6 Proteins product : similar to acidic ribosomal phosphoprotein P1, transcript variant 2 transcript_id : XM_975942.2

name	LOC665298 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252276 GeneID:665298
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 1201 ESTs, 6 Proteins product : similar to acidic ribosomal phosphoprotein P1, transcript variant 1 transcript_id : XM_001477243.1

name	Rragd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120444909 GeneID:52187 MGI:1098604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Ras-related GTP binding D transcript_id : NM_027491.2

name	4933421O10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252279 GeneID:71073 MGI:1918323
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : RIKEN cDNA 4933421O10 gene transcript_id : XM_001477324.1

name	Ube2j1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84370273 GeneID:56228 MGI:1926245
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-conjugating enzyme E2, J1 transcript_id : NM_019586.3

name	Gabrr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87299641 GeneID:14409 MGI:95626
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gamma-aminobutyric acid (GABA-C) receptor, subunit rho 2 transcript_id : NM_008076.3

name	Gabrr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679918 GeneID:14408 MGI:95625
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gamma-aminobutyric acid (GABA-C) receptor, subunit rho 1 transcript_id : NM_008075.1

name	Acy1l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:77861890 GeneID:242377 MGI:2685270
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aminoacylase 1-like 2 transcript_id : NM_001034867.1

name	Srrp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387174 GeneID:272009 MGI:2661424
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine-arginine repressor protein transcript_id : NM_177774.3

name	Pnrc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113461981 GeneID:108767 MGI:1917838
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proline-rich nuclear receptor coactivator 1 transcript_id : NM_001033225.2

name	Rngtt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:101943952 GeneID:24018 MGI:1329041
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA guanylyltransferase and 5'-phosphatase transcript_id : NM_011884.2

name	LOC100041919 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252281 GeneID:100041919
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100041919 transcript_id : XM_001477525.1

name	LOC100041924 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252283 GeneID:100041924
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041924 transcript_id : XM_001477543.1

name	Cnr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76096369 GeneID:12801 MGI:104615
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cannabinoid receptor 1 (brain) transcript_id : NM_007726.3

name	Map3k7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27881429 CCDS:CCDS18014.1 GeneID:26409 MGI:1346877
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0007252 - I-kappaB phosphorylation [Evidence IGI]; GO:0000165 - MAPKKK cascade [Evidence IDA]; GO:0043066 - negative regulation of apoptosis [Evidence IMP] [Evidence IGI]; GO:0001841 - neural tube formation [Evidence IMP]; GO:0043123 - positive regulation of I-kappaB kinase/NF-kappaB cascade [Evidence IGI]; GO:0046330 - positive regulation of JNK cascade [Evidence IGI]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007179 - transforming growth factor beta receptor signaling pathway [Evidence IMP] codon_start : 1 note : TGF-beta-activated kinase 1; TGF-beta activated kinase 1; transforming growth factor-beta-activated kinase 1 product : mitogen activated protein kinase kinase kinase 7 protein_id : NP_766276.1

name	Bach2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671608 GeneID:12014 MGI:894679
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : BTB and CNC homology 2 protein_id : NP_031547.1

name	Gja10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117168289 CCDS:CCDS18015.1 GeneID:14610 MGI:1339969
definition	GO_component : GO:0005922 - connexon complex [Evidence IEA]; GO:0005921 - gap junction [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015285 - connexon channel activity [Evidence IEA]; GO:0005243 - gap-junction forming channel activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007154 - cell communication [Evidence IEA]; GO:0007267 - cell-cell signaling [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : connexin-57 product : gap junction membrane channel protein alpha 10 protein_id : NP_034419.2

name	Casp8ap2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753288 CCDS:CCDS18016.1 GeneID:26885 MGI:1349399
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0016505 - apoptotic protease activator activity [Evidence IDA]; GO:0008656 - caspase activator activity [Evidence IDA]; GO:0042802 - identical protein binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003714 - transcription corepressor activity [Evidence ISS] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006919 - caspase activation [Evidence IDA]; GO:0008625 - induction of apoptosis via death domain receptors [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : caspase 8 associated protein 2 protein_id : NP_036127.1

name	Mdn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487133 GeneID:100019 MGI:1926159
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA]; GO:0043254 - regulation of protein complex assembly [Evidence IEA] codon_start : 1 note : MIDAS-containing protein product : midasin protein_id : NP_001074861.1

name	Lyrm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30425062 GeneID:108755 MGI:1917573
definition	codon_start : 1 note : novel complex 1 (LYR family) protein product : LYR motif containing 2 protein_id : NP_780573.1

name	Ankrd6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:60218880 CCDS:CCDS18018.1 GeneID:140577 MGI:2154278
definition	codon_start : 1 note : diversin product : ankyrin repeat domain 6 protein_id : NP_001012453.1

name	Ankrd6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:60218882 CCDS:CCDS18018.1 GeneID:140577 MGI:2154278
definition	codon_start : 1 note : diversin product : ankyrin repeat domain 6 protein_id : NP_001012454.1

name	Ankrd6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19924302 CCDS:CCDS18018.1 GeneID:140577 MGI:2154278
definition	codon_start : 1 note : diversin product : ankyrin repeat domain 6 protein_id : NP_536719.2

name	LOC665298 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252277 GeneID:665298
definition	codon_start : 1 product : similar to acidic ribosomal phosphoprotein P1 isoform 1 protein_id : XP_001477293.1

name	LOC665298 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94371660 GeneID:665298
definition	codon_start : 1 product : similar to acidic ribosomal phosphoprotein P1 isoform 2 protein_id : XP_981036.1

name	Rragd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120444910 GeneID:52187 MGI:1098604
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : Ras-related GTP binding D protein_id : NP_081767.2

name	4933421O10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149252280 GeneID:71073 MGI:1918323
definition	codon_start : 1 product : hypothetical protein LOC71073 protein_id : XP_001477374.1

name	Ube2j1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980960 CCDS:CCDS18019.1 GeneID:56228 MGI:1926245
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004840 - ubiquitin conjugating enzyme activity [Evidence ISS]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA] codon_start : 1 note : non-canonical ubiquitin conjugating enzyme 1; ubiquitin-conjugating enzyme E2 J1 product : ubiquitin-conjugating enzyme E2, J1 protein_id : NP_062532.2

name	Gabrr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87299642 CCDS:CCDS18020.1 GeneID:14409 MGI:95626
definition	GO_component : GO:0030424 - axon [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0004890 - GABA-A receptor activity [Evidence IMP]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006821 - chloride transport [Evidence TAS]; GO:0042462 - eye photoreceptor cell development [Evidence IMP]; GO:0007214 - gamma-aminobutyric acid signaling pathway [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0007601 - visual perception [Evidence IMP] codon_start : 1 note : gamma-aminobutyric acid (GABA-A) receptor, subunit rho 2; gamma-aminobutyric acid receptor rho2 subunit product : gamma-aminobutyric acid (GABA-C) receptor, subunit rho 2 protein_id : NP_032102.2

name	Gabrr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679919 CCDS:CCDS18021.1 GeneID:14408 MGI:95625
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0004890 - GABA-A receptor activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA] GO_process : GO:0006821 - chloride transport [Evidence IEA]; GO:0007214 - gamma-aminobutyric acid signaling pathway [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : gamma-aminobutyric acid (GABA-A) receptor, subunit rho 1 product : gamma-aminobutyric acid (GABA-C) receptor, subunit rho 1 protein_id : NP_032101.1

name	Acy1l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77861891 GeneID:242377 MGI:2685270
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : novel protein similar to aminoacylase 1-like 2 ACY1L2 product : aminoacylase 1-like 2 protein_id : NP_001030039.1

name	Srrp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244292 CCDS:CCDS18022.1 GeneID:272009 MGI:2661424
definition	codon_start : 1 exception : mismatches in translation product : serine-arginine repressor protein protein_id : NP_808442.1

name	Pnrc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113461982 CCDS:CCDS18023.1 GeneID:108767 MGI:1917838
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : proline rich 2 product : proline-rich nuclear receptor coactivator 1 protein_id : NP_001028397.2

name	Rngtt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755342 GeneID:24018 MGI:1329041
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004484 - mRNA guanylyltransferase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004651 - polynucleotide 5'-phosphatase activity [Evidence IEA]; GO:0008138 - protein tyrosine/serine/threonine phosphatase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006370 - mRNA capping [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 note : mouse capping enzyme product : RNA guanylyltransferase and 5'-phosphatase protein_id : NP_036014.1

name	LOC100041919 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252282 GeneID:100041919
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477575.1

name	LOC100041924 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252284 GeneID:100041924
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477593.1

name	Cnr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6724315 CCDS:CCDS18025.1 GeneID:12801 MGI:104615
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : striatal cannabinoid receptor type 1 protein product : cannabinoid receptor 1 (brain) protein_id : NP_031752.1

name	LOC665218 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665218
definition	number : 1 pseudo : _no_value

name	LOC665218 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665218
definition	number : 2 pseudo : _no_value

name	LOC665228 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665228
definition	number : 1 pseudo : _no_value

name	LOC665228 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665228
definition	number : 2 pseudo : _no_value

name	LOC665228 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665228
definition	number : 3 pseudo : _no_value

name	LOC665232 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665232
definition	number : 1 pseudo : _no_value

name	LOC665232 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665232
definition	number : 2 pseudo : _no_value

name	LOC100039142 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039142
definition	number : 2 pseudo : _no_value

name	LOC100039142 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039142
definition	number : 1 pseudo : _no_value

clone name	MSMg01-485A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390L14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-141D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-193D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386N24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-184D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499M21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-384I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135N24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-329D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-234N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248I21
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-047E19.b	B6Ng01-047E19.g
ACC	DH872203	DH872204
length	1,122	663
definition	DH872203\|Mus musculus domesticus DNA, BAC clone: B6Ng01-047E19, 5' end.	DH872204\|Mus musculus domesticus DNA, BAC clone: B6Ng01-047E19, 3' end.
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattctggaattgagaaagcgtttctgtttgacgtggtcagtaagattt atattgcaaccgacagcacgccggtggacatgcagacgtacgagctctgc tgtgacatgattgacgtggtgatcgacatctcttgtatttatgggtaagt aacacagtcttttctattgccattgaagcagtttgtttgtctgtctgtct ttggatactctgaccatgctttcctcttttccattcttaaagctatagtt gtgctgtccttcccagggctggagatagcccagggagaagggtgaggtta gaatgaccacctgccagcttttcttctcatcgcttctgtagaatttttgt attcgcttgacttttatacttttgttttaagcatctgagatctatacata ggctatttaacatgctgataataaaaagtaattgttgagcaaatgtctat taattgtggttaaagctttgttgtgcatatcttaattctcagctgttcca tgggacaggaaccatactatctatacttgtttgcagataaagaaatggac ttttgaatggaggcatttctaagacacgcttttgctgtcagtgagaaaaa actagactttgaaccttggtttaaatgatcctgaccctgctagaaaccct gcacccagtgcagtccagggggtaaaaatagatccacaagccgccaaaaa tgtttccattttcctgcttgttacagaaaacacctgctcagtattgttta aaatttgatgttgattgtctgggtgggcagagaattataaaaccgggcaa ataacttctgccagttttatgtattatggccttaacattcatagaaacca aaacttcctaaatgcttagataacagtatcgagtggggaaagttgtatgc taaacacagaagcgctctgcatgccttgagagctgctgatcatgttgtac agtcggcgtgtgagtagcgagtgttcctaatgtcagcttgtcgtagctat gctcagaccctgtgtttccacactctcctctggtggtcaccccactgaat tctgctctgtcagcctctgaagttcaagcttagcaatttctgtcttcaca actgaatctttgccacagtcag	gaattcaaatttatcaccctgaacaaaaattcaagttcaaatggatcaaa atgtggttattaggcactgtctcagttagggttttactgctgtgaacaga caccatgaccaaggcaactcttataaaggacaacatttattttaaaaaat atttaaataaaactttaataaataaatttttaaaagcaggcattaaataa ataataaccaatctacaatccctagacccacagaggttaagtataaagga agagactaggaggacacatagacctcctgggaaaaggaaataaaatgaat ttttgggtggactggagggttgcagtgagaaagggaggatcaggtgggga ggggagagacatcttggattgagggcatttgagggttgtcatggaaacct agtgcggtggaaaattcctaaaaaaatatgaaaacaatcctaacggggtc tcctaataatggggaagacagtcttttcctggctatttcttgccgtcaaa tgagacttccaataccagaactggttgcattcaattcagttgttggccaa ggaggttcccgtggaaatcccaaaactgcccaggctattgccaagacaac aggttgttctctgtacactgacagtggcatgggggtggggttcattgctg aggacacacctca
quality values	Open. Hide. 50 41 32 38 61 61 43 61 61 61 49 38 61 47 61 61 61 61 61 49 43 49 61 55 55 61 31 38 31 34 35 19 19 14 17 24 59 59 61 61 59 61 61 61 61 59 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 59 59 59 61 61 59 61 61 61 61 61 59 59 61 61 59 61 59 61 59 61 59 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 61 59 55 55 61 61 59 61 61 61 61 61 61 61 61 61 59 59 61 61 61 59 61 59 59 59 59 59 59 61 61 61 61 61 59 61 61 61 61 61 61 59 59 59 59 59 61 61 61 61 61 59 61 61 61 59 59 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 59 59 59 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 59 59 59 59 59 59 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 59 59 59 61 59 59 59 52 61 61 61 61 61 61 61 61 61 55 55 52 61 55 52 55 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 52 55 61 55 61 55 55 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 55 61 55 61 55 61 55 50 61 55 61 61 61 61 55 50 55 55 50 55 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 53 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 50 61 61 61 61 61 43 61 61 53 61 61 61 61 61 61 61 61 61 61 61 61 52 50 39 47 47 61 43 43 43 43 39 50 61 61 61 61 47 47 53 53 50 47 47 42 39 53 52 47 53 52 53 53 53 53 53 50 53 46 53 57 53 47 53 53 53 45 45 57 47 52 57 57 50 57 47 42 47 47 42 47 39 47 50 57 57 50 53 47 53 57 47 50 43 53 45 26 47 57 57 40 52 52 47 42 53 37 35 43 27 50 50 50 45 45 37 36 50 47 45 37 38 32 42 53 52 35 53 57 57 53 53 43 50 50 52 50 46 32 53 57 57 37 50 47 37 38 42 45 57 46 35 57 22 10 52 57 45 53 50 42 23 45 35 29 37 16 37 39 37 53 53 47 37 42 50 52 37 21 35 35 36 50 36 42 33 39 39 36 31 38 50 24 36 28 38 33 47 34 34 57 57 42 46 29 25 57 57 57 40 43 40 27 34 33 33 38 22 36 29 37 37 37 38 31 30 39 21 53 53 57 21 33 33 19 39 19 28 37 21 33 57 57 30 23 20 29 38 29 36 31 40 23 30 30 44 24 30 53 48 47 30 24 28 33 28 33 41 28 41 28 32 15 19 30 53 25 36 29 46 30 29 51 51 28 21 51 43 20 38 28 37 32 31 28 30 22 39 31 25 29 36 36 46 43 28 28 45 31 28 28 28 44 10 29 19 22 29 25 29 23 29 29 29 22 30 24 30 29 28 28 51 29 28 28 28 24 29 31 18 14 34 17 27 20 16 36 51 51 48 15 25 41 23 31 33 33 29 29 32 39 11 29 14 29 32 9 20 14 10 35 20 11 15 27 20 22 27 24 19 21 21 30 43 23 7 10 39 20 26 24 29 51 29 21 29 14 14 12 29 11 29 18 23 23 22 20 29 29 23 29 18 22 36 31 31 34 51 51 33 12 51 30 13 18 31 21 21 13 39 19 17 34 20 46 20 28 8 9 10 12 29 32 17 29 17 28 35 33 16 16 23 12 27 28 25 28 14 7 14 29 9 27 20 10 24 25 14 27 30 21 27 14 18 23 40 29 39 14 12 16 23 14 31 18 9 18 6 8 12 14 10 13 23 22 12 8 16 10 36 11 34 12 51 15 17 9 11 32 16 23 22 23 34 22 28 18 17 19 9 8 8 11 15 15 24 11 10 27 6 17 22 29 23 31 8 5 7 30 13 30 20 7 13 9 19 12 33 15 6 5 4 7 11 6 5 6 21 6 4 5 18 15 24 8 6 6 5 7 7 14 33 38 29 17 4 17 11 24 6 3 4 6 6 4 3 10 19 5 4 3 3 6 17 16 23 16 10 15 5 4 6 13 7 20 22 15 28 12 13 20 21 16 29 8 30 7 9 33 21 11 12 9 10 11 11 22 6 11 4 4 5 8 7 4 9 15 8 3 4 11 20 23 12 24 7 2 6 3 3 3 7 9 16	Open. Hide. 61 61 49 49 61 49 28 28 36 41 29 28 27 34 28 36 59 59 59 61 61 59 61 61 59 61 61 61 61 61 61 59 61 61 61 61 61 59 61 61 61 61 61 61 59 59 59 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 59 59 61 59 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 59 59 59 61 59 61 61 59 61 59 59 59 59 61 61 59 59 61 59 61 61 59 61 61 61 61 61 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 59 61 61 61 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 59 59 59 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 61 59 59 61 59 59 61 59 59 61 59 61 59 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 61 61 59 61 61 59 61 61 61 59 61 59 61 61 49 61 59 59 59 59 59 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 59 59 61 61 61 61 59 61 59 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 49 59 52 43 59 59 59 52 61 59 59 61 61 61 59 59 61 61 59 59 61 61 61 59 61 59 61 59 59 59 49 49 45 31 36 52 37 43 35 28 35 35 33 37 43 52 59 59 52 59 49 59 59 61 59 59 59 49 43 37 36 36 43 52 43 41 41 43 52 52 55 49 52 55 52 49 52 55 52 55 52 55 55 55 55 49 55 55 55 55 49 52 43 37 36 42 36 38 55 55 49 52 49 61 55 55 55 61 61 43 61 55 41 41 55 55 55 50 55 19 47 55 55 61 55 50 55 55 55 55 55 35 34 31 32 22 26 28 24 29 37 50 55 55 55 49 19 38 39 37 49 49 43 31 39 43 50 49 50 50 17 61 47 61 61 61 50 31 43 53 45 35 43 43 36 10 50 36 61 53 43 43 23 23 35 11 19 27 39 31 42 35 45 23 45 38 12 24 20 10 14 20 14 23 31 38 14 39 30 35 32 33 39 45 40 61 52 11 8 4 5 6 11 24 28 14 30 16 14 19 17 11 27 14 24 14 38 22 47 27 9 38 38 32 16 47 19 53 43 38 40 42 40 30 25 21 10 8 24 29 28 50 29 27 24 6 16 21 45 30 35 28 22 45 28 32 17 26 8 45 38 28 20 8 6 18 16 32 18 20 10 6 12 30 13 18 23 12 28 14 11 8 13 10 18 17

Alignment Information

BAC End 1

BAC End 2

seq1: chr4_33094044_33095188
seq2: B6Ng01-047E19.b_41_1162

seq1  GAATTCTGGAATTGAGAAAGCGTTTCTGTTTGACGTGGTCAGTAAGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAATTGAGAAAGCGTTTCTGTTTGACGTGGTCAGTAAGATTT  50

seq1  ATATTGCAACCGACAGCACGCCGGTGGACATGCAGACGTACGAGCTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCAACCGACAGCACGCCGGTGGACATGCAGACGTACGAGCTCTGC  100

seq1  TGTGACATGATTGACGTGGTGATCGACATCTCTTGTATTTATGGGTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATGATTGACGTGGTGATCGACATCTCTTGTATTTATGGGTAAGT  150

seq1  AACACAGTCTTTTCTATTGCCATTGAAGCAGTTTGTTTGTCTGTCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTCTTTTCTATTGCCATTGAAGCAGTTTGTTTGTCTGTCTGTCT  200

seq1  TTGGATACTCTGACCATGCTTTCCTCTTTTCCATTCTTAAAGCTATAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATACTCTGACCATGCTTTCCTCTTTTCCATTCTTAAAGCTATAGTT  250

seq1  GTGCTGTCCTTCCCAGGGCTGGAGATAGCCCAGGGAGAAGGGTGAGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTCCTTCCCAGGGCTGGAGATAGCCCAGGGAGAAGGGTGAGGTTA  300

seq1  GAATGACCACCTGCCAGCTTTTCTTCTCATCGCTTCTGTAGAATTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACCACCTGCCAGCTTTTCTTCTCATCGCTTCTGTAGAATTTTTGT  350

seq1  ATTCGCTTGACTTTTATACTTTTGTTTTAAGCATCTGAGATCTATACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCTTGACTTTTATACTTTTGTTTTAAGCATCTGAGATCTATACATA  400

seq1  GGCTATTTAACATGCTGATAATAAAAAGTAATTGTTGAGCAAATGTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTTAACATGCTGATAATAAAAAGTAATTGTTGAGCAAATGTCTAT  450

seq1  TAATTGTGGTTAAAGCTTTGTTGTGCATATCTTAATTCTCAGCTGTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTGGTTAAAGCTTTGTTGTGCATATCTTAATTCTCAGCTGTTCCA  500

seq1  TGGGACAGGAACCATACTATCTATACTTGTTTGCAGATAAAGAAATGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGGAACCATACTATCTATACTTGTTTGCAGATAAAGAAATGGAC  550

seq1  TTTTGAATGGAGGCATTTCTAAGACACGCTTTTGCTGTCAGTGAGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATGGAGGCATTTCTAAGACACGCTTTTGCTGTCAGTGAGAAAAA  600

seq1  ACTAGACTTTGAACCTTGGTTTAAATGATCCTGACCCTGCTAGAAACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACTTTGAACCTTGGTTTAAATGATCCTGACCCTGCTAGAAACCCT  650

seq1  GCACCCAGTGCAGTCCAGGGGGTAAAAATAGATCCACAAGCCGCCAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAGTGCAGTCCAGGGGGTAAAAATAGATCCACAAGCCGCCAAAAA  700

seq1  TGTTTCCATTTTCCTGCTTGTTACAGAAAACACCTGCTCAGTATTGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCATTTTCCTGCTTGTTACAGAAAACACCTGCTCAGTATTGTTTA  750

seq1  AAATTTGATGTTGATTGTCTGGGTGGGCAGAGAATTATAAAACCGGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATGTTGATTGTCTGGGTGGGCAGAGAATTATAAAACCGGGCAA  800

seq1  ATAACTTCTGCCAGTTTTTATGTATTATGGCCTTAACATTCATAGAAACC  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATAACTTCTGCCAG-TTTTATGTATTATGGCCTTAACATTCATAGAAACC  849

seq1  AAAACTTCCTAAATGCTTAAGATAACAGTATCGAGTGGGGAAAGTTGTAT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  AAAACTTCCTAAATGCTT-AGATAACAGTATCGAGTGGGGAAAGTTGTA-  897

seq1  TGCTAAACACAGAAGCGCTCTGCATGCC-TGAGAGGCTGCTGATCATGTT  949
      |||||||||||||||||||||||||||| ||||| ||||||||||||| |
seq2  TGCTAAACACAGAAGCGCTCTGCATGCCTTGAGA-GCTGCTGATCATG-T  945

seq1  TGTACAGTCGGCGTGTGAGTAAGCGAGTTGTTCCCTAATGTCAGCCTGTC  999
      |||||||||||||||||||| |||||| |||| |||||||||||| ||||
seq2  TGTACAGTCGGCGTGTGAGT-AGCGAG-TGTT-CCTAATGTCAGCTTGTC  992

seq1  GTTAGCTATGCTCAGACCCTGTGTTTCACACACTCTTCTCTCTGTGTGTC  1049
      | ||||||||||||||||||||||||| |||||||| ||||  ||| |||
seq2  G-TAGCTATGCTCAGACCCTGTGTTTC-CACACTCTCCTCT-GGTG-GTC  1038

seq1  ACCCCACCTGACATTCTGCTCTGTCAGCCTCTAGAAGTTTCAAGCTTAGC  1099
      |||||| |||| |||||||||||||||||||| |||| ||||||||||||
seq2  ACCCCA-CTGA-ATTCTGCTCTGTCAGCCTCT-GAAG-TTCAAGCTTAGC  1084

seq1  CATTTCTGTCTTCCACCATCTGAAAATTCTTTGCCCACCCAGTCAG  1145
       ||||||||||||   || |||||   |||||||   | |||||||
seq2  AATTTCTGTCTTC--ACAACTGAA---TCTTTGC---CACAGTCAG  1122

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information