BAC Information

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BAC

Clone NameB6Ng01-047O09
Chromosome4 (Build37)
Map Location 14,438,750 - 14,439,922
singlet/doubletsinglet
Overlap geneSlc26a7
Upstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688
Downstream gene1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047O09.bB6Ng01-047O09.g
ACCDH872629DH872630
length1,2221,139
definitionDH872629|Mus musculus domesticus DNA, BAC clone: B6Ng01-047O09, 5' end.DH872630|Mus musculus domesticus DNA, BAC clone: B6Ng01-047O09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctggcagcagctgagtgcagcaatgtaacacactgctctaaaca
tcctagtgccttggcagaacaagaagcagatgacacaggaaacaaggctc
aggatccaagtctcagtgatctattacctctacctcagccccatcttcca
aagaatcgaccatctaagaagaataatgtcaaaagctaagctaaggacct
aatcttcaaacatatgggtcagtgagggatattttacattcaaatcatga
cattctgcccccggtccccacagacttatggtcgtctcttttattattgt
tattattgttattattattattattattattattattattattattactg
tctcatatattgcattctgaccacaatttctcctttcaccgtcccaagtc
tctccttcccactttctctttttctcagacccaccctccaactcccctca
gagaggagcacgcttcccagggacatcatcctaacatggcataacaagct
gcaataagattaggcacacaccatcacatcaaggctggacaaagcaacca
gtagtaagaaagggttccacaagtaggcaaaagagtcagtgacaacctgt
ttcctctgttaggattcttacaagctactcagtcatcacatatatgcaaa
ggacctaagtcagaaccctaaaagatcatgaccatcttattataatgtta
accacatcttcttgaactttcaaagtctccataatctttggcagtctgaa
tactgtttaaacgttctattatatttcaagattcaaggaaatatcttaat
tctgagcccatcaaaaatcaaaaaataaattgcatatttctgtcctacag
tagaacaagataaacattctcattccagagaggaaaagttagggaagaag
agatcaaatcaaagcaggatcaaactatgagagcaatatcaaagtactcc
aaacccagttgtgatgagattatgtagttcaggggcttgtgtgtccacac
ttctacatgtgttgctggcacatgtgcttcttgtgctatttactatgctt
cctcaagaattcattacagttctcatatctgtgctcaatgcaccagatca
ctgagactgaacaactccatggagcttgatagtttaagtgtctaatatct
gacttaggattcgagattgactcgaatctactggatgatcaaatgatatt
gcattcaacagctctgtagcga
gaattctgtttctcaatagttaattgataccaatacagaatactttttaa
aattacaagtgactcacagactgtcaggagtcttttgaagtaaatggaaa
gcactcctaaattatgcaactatgaatattttttaattaaaagagttaat
gaatattccacaggaaagagctgtcttccacagtctgcatttaattgccc
atccacacctgatggttaatgtctttctgaaacattgtattttgtagata
aagcccaccatttaccacatgccctgtggggatagattagtcgtctcctc
tgcacatgctccaagcgtacctcatttgcttaaggcaggctattagctgt
gcattctcttatcaaggatgatgtgacttgtattgtgttagctgatttgc
ttagaaccttggaatgcaaggttatatccacgaatgagttcagtgacagg
gcagaggagatatgggtaaaagaagattatttttatatttggaagatttc
agaaatgccccttgtatttaaaattttcatttgagtgaatcagaaacttc
accattaggattttatttttgtttaaataaagtgctatgaatgaatttat
ttgaaatagcttatattaataattatccacaaatgtaaggatgagcattt
tgttttgatttgtttcattttgaatggcctgaaaatgtgcacatttgatg
acaataaggcaaaaagaaaaatcctgtataaaataaaagatgaaatgaac
aagggtacaaattgactctgtaacagcatataattcaatctatacactga
atctataacaacataaattatggaaaatttgcagacataacaagaatgta
gaatacagtttgacagtgaaatagatatggcagagttgaagagagaaaat
aaactttcttaaaattatcctaatgccagttttagtcatttagacagcat
atcatcaatctctctataatcatacacagatgctttcatgtagtacttta
gtcaaattcataaatgtagtagtatctacaaactgataagcatcctaaca
tgactcagtagacacattatcatgatgcataaatcttgtcctgactatat
ttgaggtgcccaatgaatgccttggtttacgtaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_14438750_14439922
seq2: B6Ng01-047O09.g_69_1207 (reverse)

seq1  TTTTTTTAATCTATAAACCATAGGCA-TCATTTTGGGCACCTCAATATAT  49
      ||||||||     ||||||| ||||| |||  ||||||||||||| ||||
seq2  TTTTTTTA---CGTAAACCA-AGGCATTCA--TTGGGCACCTCAA-ATAT  43

seq1  AGTCAGAGCAAGATTTTATGCAATCATGATAAATGTGTCTACTGAAGTCA  99
      ||||||  ||||| ||||||| |||||||| ||||||||||||| |||||
seq2  AGTCAGGACAAGA-TTTATGC-ATCATGAT-AATGTGTCTACTG-AGTCA  89

seq1  AATTGTTAGGATGGCTTATCAAGTTTTGGTTAGATACTACTACAATTTTA  149
         ||||||||| ||||||| |||||    ||||||||||||||  ||||
seq2  ---TGTTAGGAT-GCTTATC-AGTTT---GTAGATACTACTACA--TTTA  129

seq1  TTTGAAATTTTGAACTTAAAAGTACTACAATGAAAGCAATCTGTGTATTG  199
        ||||  |||| |||  |||||||||| |||||||| ||||||||| ||
seq2  --TGAA--TTTG-ACT--AAAGTACTAC-ATGAAAGC-ATCTGTGTA-TG  169

seq1  ATTAATAGAGAGATTGATGATAATGCTGTCTAAATGACTAAAACTGGCAT  249
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATT-ATAGAGAGATTGATGAT-ATGCTGTCTAAATGACTAAAACTGGCAT  217

seq1  TAGGATAATTTTAAGAAAGTTTATTTTCTCTCTTCAACTCTGCCATATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAATTTTAAGAAAGTTTATTTTCTCTCTTCAACTCTGCCATATCT  267

seq1  ATTTCACTGTCAAACTGTATTCTACATTCTTGTTATTGTCTTGCAAATTT  349
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  ATTTCACTGTCAAACTGTATTCTACATTCTTGTTA-TGTC-TGCAAATTT  315

seq1  TCCATAATTTATGTTGTTATAGATTCAGTGTATAGATTGAATTATATGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAATTTATGTTGTTATAGATTCAGTGTATAGATTGAATTATATGCT  365

seq1  GTTACAGAGTCAATTTGTACCCTTGTTCATTTCATCTTTTATTTTATACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGAGTCAATTTGTACCCTTGTTCATTTCATCTTTTATTTTATACA  415

seq1  GGATTTTTCTTTTTGCCTTATTGTCATCAAATGTGCACATTTTCAGGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTCTTTTTGCCTTATTGTCATCAAATGTGCACATTTTCAGGCCA  465

seq1  TTCAAAATGAAACAAATCAAAACAAAATGCTCATCCTTACATTTGTGGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATGAAACAAATCAAAACAAAATGCTCATCCTTACATTTGTGGAT  515

seq1  AATTATTAATATAAGCTATTTCAAATAAATTCATTCATAGCACTTTATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAATATAAGCTATTTCAAATAAATTCATTCATAGCACTTTATTT  565

seq1  AAACAAAAATAAAATCCTAATGGTGAAGTTTCTGATTCACTCAAATGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATAAAATCCTAATGGTGAAGTTTCTGATTCACTCAAATGAAA  615

seq1  ATTTTAAATACAAGGGGCATTTCTGAAATCTTCCAAATATAAAAATAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATACAAGGGGCATTTCTGAAATCTTCCAAATATAAAAATAATC  665

seq1  TTCTTTTACCCATATCTCCTCTGCCCTGTCACTGAACTCATTCGTGGATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTACCCATATCTCCTCTGCCCTGTCACTGAACTCATTCGTGGATA  715

seq1  TAACCTTGCATTCCAAGGTTCTAAGCAAATCAGCTAACACAATACAAGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTGCATTCCAAGGTTCTAAGCAAATCAGCTAACACAATACAAGTC  765

seq1  ACATCATCCTTGATAAGAGAATGCACAGCTAATAGCCTGCCTTAAGCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATCCTTGATAAGAGAATGCACAGCTAATAGCCTGCCTTAAGCAAA  815

seq1  TGAGGTACGCTTGGAGCATGTGCAGAGGAGACGACTAATCTATCCCCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTACGCTTGGAGCATGTGCAGAGGAGACGACTAATCTATCCCCACA  865

seq1  GGGCATGTGGTAAATGGTGGGCTTTATCTACAAAATACAATGTTTCAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGTGGTAAATGGTGGGCTTTATCTACAAAATACAATGTTTCAGAA  915

seq1  AGACATTAACCATCAGGTGTGGATGGGCAATTAAATGCAGACTGTGGAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTAACCATCAGGTGTGGATGGGCAATTAAATGCAGACTGTGGAAG  965

seq1  ACAGCTCTTTCCTGTGGAATATTCATTAACTCTTTTAATTAAAAAATATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTTTCCTGTGGAATATTCATTAACTCTTTTAATTAAAAAATATT  1015

seq1  CATAGTTGCATAATTTAGGAGTGCTTTCCATTTACTTCAAAAGACTCCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTGCATAATTTAGGAGTGCTTTCCATTTACTTCAAAAGACTCCTG  1065

seq1  ACAGTCTGTGAGTCACTTGTAATTTTAAAAAGTATTCTGTATTGGTATCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGTGAGTCACTTGTAATTTTAAAAAGTATTCTGTATTGGTATCA  1115

seq1  ATTAACTATTGAGAAACAGAATTC  1173
      ||||||||||||||||||||||||
seq2  ATTAACTATTGAGAAACAGAATTC  1139