BAC Information

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BAC

Clone NameB6Ng01-048A08
Chromosome4 (Build37)
Map Location 146,553,895 - 146,631,057
singlet/doubletdoublet
Overlap geneOTTMUSG00000010657, LOC384087, LOC666546
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneLOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048A08.bB6Ng01-048A08.g
ACCDH872713DH872714
length1,0831,120
definitionDH872713|Mus musculus domesticus DNA, BAC clone: B6Ng01-048A08, 5' end.DH872714|Mus musculus domesticus DNA, BAC clone: B6Ng01-048A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,629,969 - 146,631,057)(146,553,895 - 146,555,029)
sequence
gaattcaacaagaagttcattcttgcccacgaacaaaagatttttgtaat
tctccaacattacatccatgtacagtgtcctctgagcaaaactgagacat
tcccattcctccagtgagaagtacaaggccacatccttgaaggttaacag
accctggaatggaaaactacctacttgatactggacaaaaataattttct
actttaaaaaaggaagtaattaagatatccttttttgctgggcgtggtgg
cgaatgcctttaatcccagcacttgggaggcagaggcaggcagatttctg
agttccaggcctggtctacagagtgagttccaggataggacagccagggc
tgcacagagaaatcctgtcttgaaaacaacaacaagaacaacaacaaaca
agaacaacaacaaaaagatatcctttttgatgcaaatgaggaaggaaaat
attgaaggataaatgttttctgaaagtgtgattgagatgtttctgaagat
acgaattgctgctcttccactgtcaatctatagaatgacttactataatg
ctcacgtttagaaaggctctctaaataaaaaaaaaataaaaaaggaaaag
aatacatagcacataggcatacattcaggcaaatgtaagcaacatatatt
gaagaaaaatgaactttgactttattcaaagaaactttctaaactactaa
tagacttccttatatttctttttcactgagaatgcatgatgtaatttcaa
aagcagtaaacatttatggaatataacatgtacttttgatgtctagatgc
agtaatgtacctttatgaaatatgggttgatatcaaacagaatcccactg
acccattaaagatagtaaagttatgataaaaaatatgctttcaaatttta
catgtcccactttgttcaagtatggaacactagcttagtcttatgtgcag
ctgtggtctcacatttggaatacacatggtccatttgacattctgaggct
aagttcatgctacacacatctagaagaactggtaggatactaaatgcaga
atattggatggactaatgactagtttttcttta
gaattcataaaggagagaaaccttacaaatgtagtgaatgtgacaaatgc
tttactgaaaaaggccatcagagaattcatacaggagagatagcttacaa
atagtttgtatgtgacaaatacaatacaatgtcagtctgagaaatcatca
gtttttaatacagtagagaatatttataaatgaagtgaatgagacaatcc
tttaccaagatatatcatcttaaaaatcattagagaatacttacagaaga
gaaacttttcaattatatcgaaggtatgaatcctttactcttggcctatt
tcctagaatgttaacagtgaatacttacaggatacaaacttaactcatgc
attgtatgaagaaatatctttgacttcatttcaggtcaaagagaatatct
aataactttttaggcaaagtatttctgttggggaaagtgtggcctgtgtt
ttattcacgttctattcttgacaacaattgaggctccacactagagaatt
agtatgattatgaaaatcatgtgaaaactttcatgcaatgttcaaatctt
aaataatgtcaactattttttgcttgaagaaactctgaaaatgtaaaaat
gtagaaagcttttcatgacacctttttacttgttcacccttaaatgttac
aagatgaagacaagttgggaagtgaggagatattattgtgtaacacattc
attgagacagaaataatccatttcaaaaggaaactatttaaggtctttaa
tgcagtcctaaaaatatctaataaaactggtaacattctgtgtatttaat
tcaaatgagccaattgagaaaaattatacttaaaagaatatctggcaaac
tgagccacccagacagcatattctttatcctataaatatgcttacagatg
ttacgtgtgcttcgagtattcagtatataatcttctcaaatgcttggtca
cattataggatacactgatcattatttcccatttattgaacgaaagtcta
taggtctctgaaaatgctgaccgttgataatattacaagacattgtggtg
tactccactctaccgtaggataaatagattccattcttttctaatcatct
cacggaatctataattttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146629969_146631057
seq2: B6Ng01-048A08.b_40_1122 (reverse)

seq1  TAAAGAAAAAACTTAGTCATTTAGTCCATCCATTATTTCTGCATTTAGTA  50
      ||||||||||   |||||| |||||||||||| || ||||||||||||||
seq2  TAAAGAAAAA--CTAGTCA-TTAGTCCATCCAATA-TTCTGCATTTAGTA  46

seq1  TTCTACCAGTTTCTTCTAGAATGTGTGTAGCATTGAACTTAGGCCTCAGA  100
      | ||||||| ||||||||| |||||||||||| |||||||| ||||||||
seq2  TCCTACCAG-TTCTTCTAG-ATGTGTGTAGCA-TGAACTTA-GCCTCAGA  92

seq1  TTGTCAAATGGA-CATGTTGTAATACAAATGTGAGA-CACAGCTGCACAT  148
       ||||||||||| |||| |||| | ||||||||||| |||||||||||||
seq2  ATGTCAAATGGACCATG-TGTATTCCAAATGTGAGACCACAGCTGCACAT  141

seq1  AAGACTAAGCTAGTG-TCCATACTTGAACAAAGT-GGACATTGTAAAATT  196
      ||||||||||||||| |||||||||||||||||| ||||| |||||||||
seq2  AAGACTAAGCTAGTGTTCCATACTTGAACAAAGTGGGACA-TGTAAAATT  190

seq1  TGAAAGCATATTTTTTATCATAACTTTACTATCTTTAATGGGTCAGTGGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCATATTTTTTATCATAACTTTACTATCTTTAATGGGTCAGTGGG  240

seq1  ATTCTGTTTGATATCAACCCATATTTCATAAAGGTACATTACTGCATCTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTTGATATCAACCCATATTTCATAAAGGTACATTACTGCATCTA  290

seq1  GACATCAAAAGTACATGTTATATTCCATAAATGTTTACTGCTTTTGAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAAAAGTACATGTTATATTCCATAAATGTTTACTGCTTTTGAAAT  340

seq1  TACATCATGCATTCTCAGTGAAAAAGAAATATAAGGAAGTCTATTAGTAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCATGCATTCTCAGTGAAAAAGAAATATAAGGAAGTCTATTAGTAG  390

seq1  TTTAGAAAGTTTCTTTGAATAAAGTCAAAGTTCATTTTTCTTCAATATAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGTTTCTTTGAATAAAGTCAAAGTTCATTTTTCTTCAATATAT  440

seq1  GTTGCTTACATTTGCCTGAATGTATGCCTATGTGCTATGTATTCTTTTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTACATTTGCCTGAATGTATGCCTATGTGCTATGTATTCTTTTCC  490

seq1  TTTTTTATTTTTTTTTTATTTAGAGAGCCTTTCTAAACGTGAGCATTATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTTTTTTTTATTTAGAGAGCCTTTCTAAACGTGAGCATTATA  540

seq1  GTAAGTCATTCTATAGATTGACAGTGGAAGAGCAGCAATTCGTATCTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCATTCTATAGATTGACAGTGGAAGAGCAGCAATTCGTATCTTCA  590

seq1  GAAACATCTCAATCACACTTTCAGAAAACATTTATCCTTCAATATTTTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCTCAATCACACTTTCAGAAAACATTTATCCTTCAATATTTTCC  640

seq1  TTCCTCATTTGCATCAAAAAGGATATCTTTTTGTTGTTGTTCTTGTTTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATTTGCATCAAAAAGGATATCTTTTTGTTGTTGTTCTTGTTTGT  690

seq1  TGTTGTTCTTGTTGTTGTTTTCAAGACAGGATTTCTCTGTGCAGCCCTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCTTGTTGTTGTTTTCAAGACAGGATTTCTCTGTGCAGCCCTGG  740

seq1  CTGTCCTATCCTGGAACTCACTCTGTAGACCAGGCCTGGAACTCAGAAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTATCCTGGAACTCACTCTGTAGACCAGGCCTGGAACTCAGAAAT  790

seq1  CTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATTCGCCACCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATTCGCCACCAC  840

seq1  GCCCAGCAAAAAAGGATATCTTAATTACTTCCTTTTTTAAAGTAGAAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCAAAAAAGGATATCTTAATTACTTCCTTTTTTAAAGTAGAAAAT  890

seq1  TATTTTTGTCCAGTATCAAGTAGGTAGTTTTCCATTCCAGGGTCTGTTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTCCAGTATCAAGTAGGTAGTTTTCCATTCCAGGGTCTGTTAA  940

seq1  CCTTCAAGGATGTGGCCTTGTACTTCTCACTGGAGGAATGGGAATGTCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAGGATGTGGCCTTGTACTTCTCACTGGAGGAATGGGAATGTCTC  990

seq1  AGTTTTGCTCAGAGGACACTGTACATGGATGTAATGTTGGAGAATTACAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCTCAGAGGACACTGTACATGGATGTAATGTTGGAGAATTACAA  1040

seq1  AAATCTTTTGTTCGTGGGCAAGAATGAACTTCTTGTTGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTGTTCGTGGGCAAGAATGAACTTCTTGTTGAATTC  1083

seq1: chr4_146553895_146555029
seq2: B6Ng01-048A08.g_67_1186

seq1  GAATTCATAAAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGC  50

seq1  TTTACTGAAAAAGGCCATCAGAGAATTCATACAGGAGAGATAGCTTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAAAAAGGCCATCAGAGAATTCATACAGGAGAGATAGCTTACAA  100

seq1  ATAGTTTGTATGTGACAAATACAATACAATGTCAGTCTGAGAAATCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGTATGTGACAAATACAATACAATGTCAGTCTGAGAAATCATCA  150

seq1  GTTTTTAATACAGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAATACAGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCC  200

seq1  TTTACCAAGATATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAGATATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGA  250

seq1  GAAACTTTTCAATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTTCAATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATT  300

seq1  TCCTAGAATGTTAACAGTGAATACTTACAGGATACAAACTTAACTCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAATGTTAACAGTGAATACTTACAGGATACAAACTTAACTCATGC  350

seq1  ATTGTATGAAGAAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGAAGAAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCT  400

seq1  AATAACTTTTTAGGCAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTTTTAGGCAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTT  450

seq1  TTATTCACGTTCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACGTTCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAATT  500

seq1  AGTATGATTATGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGATTATGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCTT  550

seq1  AAATAATGTCAACTATTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGTCAACTATTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAAT  600

seq1  GTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCACCCTTAAATGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCACCCTTAAATGTTAC  650

seq1  AAGATGAAGACAAGTTGGGAAGTGAGGAGATATTATTGTGTAACACATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAGACAAGTTGGGAAGTGAGGAGATATTATTGTGTAACACATTC  700

seq1  ATTGAGACAGAAATAATCCATTTCAAAAGGAAACTATTTAAGGTCTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGACAGAAATAATCCATTTCAAAAGGAAACTATTTAAGGTCTTTAA  750

seq1  TGCAGTCCTAAAAATATCTAATAAAACTGGTAACATTCTGTGTATTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCCTAAAAATATCTAATAAAACTGGTAACATTCTGTGTATTTAAT  800

seq1  TCAAATGAGCCAATTGAGAAAAATTATACTTAAAAGAATATCTGGCAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGAGCCAATTGAGAAAAATTATACTTAAAAGAATATCTGGCAAAC  850

seq1  TGAGCCACCCAGACAGCATATTCTTTATCCTATAAATATGCTTACAGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCCAGACAGCATATTCTTTATCCTATAAATATGCTTACAGATG  900

seq1  TTACGTGTGCTTCGAGTATTCAGTAATAATAATTCTTCTCAAATGCTTGG  950
      |||||||||||||||||||||||||   |||| |||||||||||||||||
seq2  TTACGTGTGCTTCGAGTATTCAGTA--TATAA-TCTTCTCAAATGCTTGG  947

seq1  TTCACATTATAGGATAACAACTGATCATTATTTCCCATTTATTGAACGAA  1000
       |||||||||||||||   |||||||||||||||||||||||||||||||
seq2  -TCACATTATAGGATA--CACTGATCATTATTTCCCATTTATTGAACGAA  994

seq1  AGTCCTATAGGTCTCTGAAAAATGCTGACCGTTGATACATATTACAAGAC  1050
      ||| ||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  AGT-CTATAGGTCTCTG-AAAATGCTGACCGTTGATA-ATATTACAAGAC  1041

seq1  ATTGTGGTGTACTCCACTCTACCGTAAGGAATAAAATAGATTTCCATTCT  1100
      ||||||||||||||||||||||||| ||||   ||||||| |||||||||
seq2  ATTGTGGTGTACTCCACTCTACCGT-AGGA--TAAATAGA-TTCCATTCT  1087

seq1  TTTCTTAAATCATCT-ACGGAATCTTAATATTTTGC  1135
      |||||  |||||||| |||||||| ||  |||||||
seq2  TTTCT--AATCATCTCACGGAATC-TATAATTTTGC  1120