BAC Information

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BAC

Clone NameB6Ng01-048G19
Chromosome4 (Build37)
Map Location 28,974,433 - 29,095,190
singlet/doubletdoublet
Overlap geneLOC100040907
Upstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
Downstream geneLOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048G19.bB6Ng01-048G19.g
ACCDH872987DH872988
length1,136906
definitionDH872987|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G19, 5' end.DH872988|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,094,049 - 29,095,190)(28,974,433 - 28,975,332)
sequence
gaattcaatgtaatataaaacaaagtaatgaaggaaggacagccttgaaa
atggcaaattttagcatggagacttagtgattgaaggaacggtggtactg
cctttactatcatctccagacagaaaaacaaatctatgccattttagttt
ctaacgattttatcatattcaatttctacagacatagagaagaaaaatag
aatcgtcttcagacttgatggctactcccatatcaacagagttaataaca
aggtctttgtttggagacaaacagagagatcttggaatgtgaaggaagga
caagaagaagggtgacaggtgggcaaacacaaggagagttagaaataggg
caggaaaaatgagagaggaaatctgaagcggctggcacctgcttagaaga
gcagaagtaaacctgctgagagtctcacatttgtggatacttacagaaat
cttcaaaggcagtgtgcaatgcttctcccgaacacactgaccctttagaa
ttcgaaagaaaaacatatttaccttttagaaaagtcctcttatagaattg
ctaatcttttggtgatataagtcccacatatccaagtggaaaaaatttgt
ttcttggtcagctgaaatataagtgaaaagcgagcaaaattttaaaaaaa
attacgaatgttaatgaattttgctaacatagagcttaatgtcatttgtt
atgcaaatataaaatgggatagattttatttattaaatgtatacaaaatt
tccagacagtagatgttggctccatctttgttagatatcatcaaacataa
atagatcaagttggagtgcagaccatcacccacaagaacctgaccagaaa
tggtgaaatcatgaccaatatcattgtagaagcatcatagaagactgccc
ccaatctaagctagccagaatgatgctaatgtcaatttcacataggatgg
aattgggatgaagtttatgggctgcacagatgaaatttgtatcccctgta
ataagaacttaaataataattgcatacatgtgtcaatccataattttata
tatgcatgccccacttattgtggaataggtcagtaggcatgacctatttt
tccataagtaagctaagttacattacaaacgttaaa
gaattccaaacctctcataaatcttgctagtctccctaaatctgtgaaaa
gtattagaagactctgagcaaaggtgaaattctctgtttgtttcccctcc
tacttttcagaggggaaatcgcaaaggcaaagacagttttgtgcagagtc
ctgactcttttctctctcagtctctcccattgcactcaggagatcacaag
ctaaagactaaccttgaaggagaaaaaagaccaaaaagaagacatcattt
ttcaaaaggcaacttgagcaagatagagagagaaaaaatgttgtcaaatg
agctttagacaaaccctacttctctatttagataggatggcgctgacctt
ttaagtaactgaaacatagacatgtaaacagtttagcaatgcttgctatg
gaactggaactttttatggctccatctctgaaactttcatcctaatatca
tattgtgtgtggaagagaaaaccagtgttcatgtcatttgctaggctctt
aagctgttaaacccgatactgagctctgatgaatcactataatttaaaga
atatggccacgattgcaggggtatgtttgggatactggtaatggggaaat
gagtatacactgactgtgaaaataaaactaaacaccagtttctttcccaa
tgataatatcaacatgcctttgtgggattttgcattcatgtgttattcat
gtaggtgttgagatatgttttggtgaagggcaaggaaaaaccatcttggt
gtaccgatggtagcagcgaggagctgcctaacctgaaagaagacagacac
agcataattgcatgaacacgtttctacatgttcttttagtagtcaactat
aaaatcctcaacacagattaaagaagaatgtggagaagattggggtgtta
tagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_29094049_29095190
seq2: B6Ng01-048G19.b_45_1180 (reverse)

seq1  TTTAACTGTTTTGTAATGATACTTAG-TTACTTATTGAAAAATAGGTCAT  49
      ||||||   |||||||||  |||||| |||||||| ||||||||||||| 
seq2  TTTAAC--GTTTGTAATGTAACTTAGCTTACTTATGGAAAAATAGGTCA-  47

seq1  TGCCTAACTGACCCTATT-CACATATATGT-GTGCATGCATATATACAAA  97
      ||||| ||||| |||||| |||| ||| || | ||||||||||||| || 
seq2  TGCCT-ACTGA-CCTATTCCACA-ATAAGTGGGGCATGCATATATAAAAT  94

seq1  TATATGATTTACACATGTATGCAATTATTAATTTAAGTTCTTATTACATG  147
      |||  |||| ||||||||||||||||||| |||||||||||||||||| |
seq2  TAT-GGATTGACACATGTATGCAATTATT-ATTTAAGTTCTTATTACA-G  141

seq1  TGGATACAAATCTCATCTGTGCAGCCCATATACTTCATTCCAATTCCATC  197
       |||||||||| |||||||||||||||||| ||||||| |||||||||||
seq2  GGGATACAAATTTCATCTGTGCAGCCCATAAACTTCATCCCAATTCCATC  191

seq1  CTATGTGAAATTGACATTAGCATCATTCTGGCTAGCTTAGATTGGGGGCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGAAATTGACATTAGCATCATTCTGGCTAGCTTAGATTGGGGGCA  241

seq1  GTCTTCTATGATGCTTCTACAATGATATTGGTCATGATTTCACCATTTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTATGATGCTTCTACAATGATATTGGTCATGATTTCACCATTTCT  291

seq1  GGTCAGGTTCTTGTGGGTGATGGTCTGCACTCCAACTTGATCTATTTATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGTTCTTGTGGGTGATGGTCTGCACTCCAACTTGATCTATTTATG  341

seq1  TTTGATGATATCTAACAAAGATGGAGCCAACATCTACTGTCTGGAAATTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGATATCTAACAAAGATGGAGCCAACATCTACTGTCTGGAAATTT  391

seq1  TGTATACATTTAATAAATAAAATCTATCCCATTTTATATTTGCATAACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACATTTAATAAATAAAATCTATCCCATTTTATATTTGCATAACAA  441

seq1  ATGACATTAAGCTCTATGTTAGCAAAATTCATTAACATTCGTAATTTTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTAAGCTCTATGTTAGCAAAATTCATTAACATTCGTAATTTTTT  491

seq1  TTAAAATTTTGCTCGCTTTTCACTTATATTTCAGCTGACCAAGAAACAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTTGCTCGCTTTTCACTTATATTTCAGCTGACCAAGAAACAAA  541

seq1  TTTTTTCCACTTGGATATGTGGGACTTATATCACCAAAAGATTAGCAATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCACTTGGATATGTGGGACTTATATCACCAAAAGATTAGCAATT  591

seq1  CTATAAGAGGACTTTTCTAAAAGGTAAATATGTTTTTCTTTCGAATTCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGAGGACTTTTCTAAAAGGTAAATATGTTTTTCTTTCGAATTCTA  641

seq1  AAGGGTCAGTGTGTTCGGGAGAAGCATTGCACACTGCCTTTGAAGATTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCAGTGTGTTCGGGAGAAGCATTGCACACTGCCTTTGAAGATTTC  691

seq1  TGTAAGTATCCACAAATGTGAGACTCTCAGCAGGTTTACTTCTGCTCTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTATCCACAAATGTGAGACTCTCAGCAGGTTTACTTCTGCTCTTC  741

seq1  TAAGCAGGTGCCAGCCGCTTCAGATTTCCTCTCTCATTTTTCCTGCCCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGGTGCCAGCCGCTTCAGATTTCCTCTCTCATTTTTCCTGCCCTA  791

seq1  TTTCTAACTCTCCTTGTGTTTGCCCACCTGTCACCCTTCTTCTTGTCCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACTCTCCTTGTGTTTGCCCACCTGTCACCCTTCTTCTTGTCCTT  841

seq1  CCTTCACATTCCAAGATCTCTCTGTTTGTCTCCAAACAAAGACCTTGTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACATTCCAAGATCTCTCTGTTTGTCTCCAAACAAAGACCTTGTTA  891

seq1  TTAACTCTGTTGATATGGGAGTAGCCATCAAGTCTGAAGACGATTCTATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTGTTGATATGGGAGTAGCCATCAAGTCTGAAGACGATTCTATT  941

seq1  TTTCTTCTCTATGTCTGTAGAAATTGAATATGATAAAATCGTTAGAAACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCTATGTCTGTAGAAATTGAATATGATAAAATCGTTAGAAACT  991

seq1  AAAATGGCATAGATTTGTTTTTCTGTCTGGAGATGATAGTAAAGGCAGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCATAGATTTGTTTTTCTGTCTGGAGATGATAGTAAAGGCAGTA  1041

seq1  CCACCGTTCCTTCAATCACTAAGTCTCCATGCTAAAATTTGCCATTTTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGTTCCTTCAATCACTAAGTCTCCATGCTAAAATTTGCCATTTTCA  1091

seq1  AGGCTGTCCTTCCTTCATTACTTTGTTTTATATTACATTGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTCCTTCCTTCATTACTTTGTTTTATATTACATTGAATTC  1136

seq1: chr4_28974433_28975332
seq2: B6Ng01-048G19.g_66_971

seq1  GAATTCCAAACCTCTCATAAATCTTGCTAGTCTCCCTAAATCTGTGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACCTCTCATAAATCTTGCTAGTCTCCCTAAATCTGTGAAAA  50

seq1  GTATTAGAAGACTCTGAGCAAAGGTGAAATTCTCTGTTTGTTTCCCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGAAGACTCTGAGCAAAGGTGAAATTCTCTGTTTGTTTCCCCTCC  100

seq1  TACTTTTCAGAGGGGAAATCGCAAAGGCAAAGACAGTTTTGTGCAGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCAGAGGGGAAATCGCAAAGGCAAAGACAGTTTTGTGCAGAGTC  150

seq1  CTGACTCTTTTCTCTCTCAGTCTCTCCCATTGCACTCAGGAGATCACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTTTTCTCTCTCAGTCTCTCCCATTGCACTCAGGAGATCACAAG  200

seq1  CTAAAGACTAACCTTGAAGGAGAAAAAAGACCAAAAAGAAGACATCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGACTAACCTTGAAGGAGAAAAAAGACCAAAAAGAAGACATCATTT  250

seq1  TTCAAAAGGCAACTTGAGCAAGATAGAGAGAGAAAAAATGTTGTCAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGGCAACTTGAGCAAGATAGAGAGAGAAAAAATGTTGTCAAATG  300

seq1  AGCTTTAGACAAACCCTACTTCTCTATTTAGATAGGATGGCGCTGACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAGACAAACCCTACTTCTCTATTTAGATAGGATGGCGCTGACCTT  350

seq1  TTAAGTAACTGAAACATAGACATGTAAACAGTTTAGCAATGCTTGCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAACTGAAACATAGACATGTAAACAGTTTAGCAATGCTTGCTATG  400

seq1  GAACTGGAACTTTTTATGGCTCCATCTCTGAAACTTTCATCCTAATATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGAACTTTTTATGGCTCCATCTCTGAAACTTTCATCCTAATATCA  450

seq1  TATTGTGTGTGGAAGAGAAAACCAGTGTTCATGTCATTTGCTAGGCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTGTGGAAGAGAAAACCAGTGTTCATGTCATTTGCTAGGCTCTT  500

seq1  AAGCTGTTAAACCCGATACTGAGCTCTGATGAATCACTATAATTTAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTAAACCCGATACTGAGCTCTGATGAATCACTATAATTTAAAGA  550

seq1  ATATGGCCACGATTGCAGGGGTATGTTTGGGATACTGGTAATGGGGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCCACGATTGCAGGGGTATGTTTGGGATACTGGTAATGGGGAAAT  600

seq1  GAGTATACACTGACTGTGAAAATAAAACTAAACACCAG-TTCTTTCCCAA  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAGTATACACTGACTGTGAAAATAAAACTAAACACCAGTTTCTTTCCCAA  650

seq1  TGATAATATCAACATGCCTTTGTGGGA-TTTGCATTCATGTGTTATTCAT  698
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGATAATATCAACATGCCTTTGTGGGATTTTGCATTCATGTGTTATTCAT  700

seq1  GTAGGTGTTGAGATATGTTTTGGTGAA-GGCAAGGAAAAACCATCTTGGT  747
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTAGGTGTTGAGATATGTTTTGGTGAAGGGCAAGGAAAAACCATCTTGGT  750

seq1  GTACCGATGGTAGCAGCGAGGAGCTGCCTAACCTG-AAGAAGACAGACAC  796
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTACCGATGGTAGCAGCGAGGAGCTGCCTAACCTGAAAGAAGACAGACAC  800

seq1  AGCAT-ATTGCATGAACACG-TTCTACATGTTCTTTTAGTAGTCAACTAT  844
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCATAATTGCATGAACACGTTTCTACATGTTCTTTTAGTAGTCAACTAT  850

seq1  AAAACTCTTCAACACAGATTAAAG-AGAATGTGTAGAAGATT-GTGTGTC  892
      |||| || |||||||||||||||| |||||||| |||||||| | |||| 
seq2  AAAA-TCCTCAACACAGATTAAAGAAGAATGTGGAGAAGATTGGGGTGT-  898

seq1  TATAGCTG  900
      ||||||||
seq2  TATAGCTG  906