BAC Information

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BAC

Clone NameB6Ng01-048I13
Chromosome4 (Build37)
Map Location 109,941,030 - 110,049,867
singlet/doubletdoublet
Overlap geneElavl4
Upstream geneEps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2
Downstream geneLOC100040381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048I13.bB6Ng01-048I13.g
ACCDH873063DH873064
length9621,040
definitionDH873063|Mus musculus domesticus DNA, BAC clone: B6Ng01-048I13, 5' end.DH873064|Mus musculus domesticus DNA, BAC clone: B6Ng01-048I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,049,286 - 110,049,867)(109,941,030 - 109,942,086)
sequence
gaattcagtaacataatactagctgccttttcccttcttgacctttggaa
tatttttcctgagttactgcttttgccagggcctctagtattatatcaat
tagaaaaaaatagtatcattaaaatatgtcaatactatgaatatccaaag
caacctattcctaggaaaataccaatgacattttcaacagaactatagga
aaatctaaacttcaacaaagcatgatggctcattcctgccgtcctaacac
ctgggagctgaggtaggtagatcataagtttgagtttaatagagacttca
tagaaagagctcttaattaagcttatatgaaaacacaaaagatattagtg
aaaactttagcaaaaagaatagagctggggatatcacagcatctgttttg
aagatgttttacaaagccataaaaacccccaaaccccataagagcagacg
cagacatggaacaaaacagtgatttgtgatggctactttttattgtcaac
ctgacaggatctagatccccccccaagagacatgattatctagattatgc
gagcctctaggtttacctatgaggtcatctacattaggtaaattgaggtg
agaagactcgccttaacatgggtggtaccacttcatggtgcaagatggct
gccaatgagttcacttcaacgagaaccagaaagattgcactttttattgt
atcttgcacattctttgaaagcactctacactaacttatactcccaaccc
atgaagaaataacttttaaggaggcagagtgtactggctagttttgtgtc
aacttgacacagctggagttatcacagagaaaggagcttcagttgaggaa
atgcctccatgagatccactgtaaggcattttctcaattagtgatcaagg
ggaaaggcccttgtggtgggaccatctctgggctgtatcctgggttctat
agagagcaggct
gaattcatttccattcttggttggaatttggtggcagtctttagtacctt
ctggaagttaagagaccatgaaacatttccactcataagaggtactgttt
ttgctgtttttcatcatggtattgatattctaagttgacttagaactctt
catcctcctgccttagtctcccaaagggctgatcttgcagtcatgtttta
tcatatttgctttgagagtttttacaagtcatgcaaatcaaagaaaaagc
cagtgggagctcttaccattttactgcacagccattagatctgagcatgc
ctagatgctatttctttttaagtaaatgaataaaaatacatacttgtaaa
tcattccacatcttttcagttaaaacccattcacatatttatgaattatt
tattctagagcccaagagttaacgtgaacattagagttggattactcagg
ttcaaattcttatctgctctatgcgcttggataagccaattaaccgttcc
actttagttatctcaactgtaataaggaacatattaataagataatgctg
acatagtttcatgatatgaatatggcaatgatgaagtgaattattattgt
tggataactaagccgcacaccagttgatccctggctgccctctagagttc
agtctataggttaatagaaaattctgcaaataagagttacaaatgccatg
aagcaagagtcactattttctgcagtatgttccttccatgcctctagaca
gtgccaccagagtcccaatctcagctttacctgaccatgtcatttcctat
aactccctggattccgttctgacccacacagcctcaggtactcccgactt
ctctgattcctggaggcaacactccataggtcaaaataattaagggagta
ctttatgttttacctgtatgtcaccgggagactagtgctccttcaagtaa
gtgtgggattttggacaactctgtcttctgcatcaatacacagaatcaac
cttcaccattgaagggcaataacaaagtctgttcagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_110049286_110049867
seq2: B6Ng01-048I13.b_46_627 (reverse)

seq1  GTAGATGACCTCATAGGTAAACCTAGAGGCTCGCATAATCTAGATAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGACCTCATAGGTAAACCTAGAGGCTCGCATAATCTAGATAATCA  50

seq1  TGTCTCTTGGGGGGGGATCTAGATCCTGTCAGGTTGACAATAAAAAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTGGGGGGGGATCTAGATCCTGTCAGGTTGACAATAAAAAGTAG  100

seq1  CCATCACAAATCACTGTTTTGTTCCATGTCTGCGTCTGCTCTTATGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACAAATCACTGTTTTGTTCCATGTCTGCGTCTGCTCTTATGGGGT  150

seq1  TTGGGGGTTTTTATGGCTTTGTAAAACATCTTCAAAACAGATGCTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTTTTTATGGCTTTGTAAAACATCTTCAAAACAGATGCTGTGAT  200

seq1  ATCCCCAGCTCTATTCTTTTTGCTAAAGTTTTCACTAATATCTTTTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGCTCTATTCTTTTTGCTAAAGTTTTCACTAATATCTTTTGTGT  250

seq1  TTTCATATAAGCTTAATTAAGAGCTCTTTCTATGAAGTCTCTATTAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATAAGCTTAATTAAGAGCTCTTTCTATGAAGTCTCTATTAAACT  300

seq1  CAAACTTATGATCTACCTACCTCAGCTCCCAGGTGTTAGGACGGCAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTATGATCTACCTACCTCAGCTCCCAGGTGTTAGGACGGCAGGAA  350

seq1  TGAGCCATCATGCTTTGTTGAAGTTTAGATTTTCCTATAGTTCTGTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCATGCTTTGTTGAAGTTTAGATTTTCCTATAGTTCTGTTGAA  400

seq1  AATGTCATTGGTATTTTCCTAGGAATAGGTTGCTTTGGATATTCATAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATTGGTATTTTCCTAGGAATAGGTTGCTTTGGATATTCATAGTA  450

seq1  TTGACATATTTTAATGATACTATTTTTTTCTAATTGATATAATACTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATATTTTAATGATACTATTTTTTTCTAATTGATATAATACTAGAG  500

seq1  GCCCTGGCAAAAGCAGTAACTCAGGAAAAATATTCCAAAGGTCAAGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCAAAAGCAGTAACTCAGGAAAAATATTCCAAAGGTCAAGAAGG  550

seq1  GAAAAGGCAGCTAGTATTATGTTACTGAATTC  582
      ||||||||||||||||||||||||||||||||
seq2  GAAAAGGCAGCTAGTATTATGTTACTGAATTC  582

seq1: chr4_109941030_109942086
seq2: B6Ng01-048I13.g_69_1108

seq1  GAATTCATTTCCATTCTTGGTTGGAATTTGGTGGCAGTCTTTAGTACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCATTCTTGGTTGGAATTTGGTGGCAGTCTTTAGTACCTT  50

seq1  CTGGAAGTTAAGAGACCATGAAACATTTCCACTCATAAGAGGTACTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTTAAGAGACCATGAAACATTTCCACTCATAAGAGGTACTGTTT  100

seq1  TTGCTGTTTTTCATCATGGTATTGATATTCTAAGTTGACTTAGAACTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTTTTCATCATGGTATTGATATTCTAAGTTGACTTAGAACTCTT  150

seq1  CATCCTCCTGCCTTAGTCTCCCAAAGGGCTGATCTTGCAGTCATGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCTGCCTTAGTCTCCCAAAGGGCTGATCTTGCAGTCATGTTTTA  200

seq1  TCATATTTGCTTTGAGAGTTTTTACAAGTCATGCAAATCAAAGAAAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTGCTTTGAGAGTTTTTACAAGTCATGCAAATCAAAGAAAAAGC  250

seq1  CAGTGGGAGCTCTTACCATTTTACTGCACAGCCATTAGATCTGAGCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAGCTCTTACCATTTTACTGCACAGCCATTAGATCTGAGCATGC  300

seq1  CTAGATGCTATTTCTTTTTAAGTAAATGAATAAAAATACATACTTGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGCTATTTCTTTTTAAGTAAATGAATAAAAATACATACTTGTAAA  350

seq1  TCATTCCACATCTTTTCAGTTAAAACCCATTCACATATTTATGAATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCACATCTTTTCAGTTAAAACCCATTCACATATTTATGAATTATT  400

seq1  TATTCTAGAGCCCAAGAGTTAACGTGAACATTAGAGTTGGATTACTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGAGCCCAAGAGTTAACGTGAACATTAGAGTTGGATTACTCAGG  450

seq1  TTCAAATTCTTATCTGCTCTATGCGCTTGGATAAGCCAATTAACCGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTCTTATCTGCTCTATGCGCTTGGATAAGCCAATTAACCGTTCC  500

seq1  ACTTTAGTTATCTCAACTGTAATAAGGAACATATTAATAAGATAATGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTTATCTCAACTGTAATAAGGAACATATTAATAAGATAATGCTG  550

seq1  ACATAG-TTCATGATATGAATATGGCAATGATGAAGTGAATTATTATTGT  599
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTTCATGATATGAATATGGCAATGATGAAGTGAATTATTATTGT  600

seq1  TGGATAACTAAGCCGCACACCAGTTGATCCCTGGCTGCCCTCTAGAGTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAACTAAGCCGCACACCAGTTGATCCCTGGCTGCCCTCTAGAGTTC  650

seq1  AGTCTATAGGTTAATAGAAAATTCTGCAAATAAGAGTTACAAAATGCCAT  699
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTCTATAGGTTAATAGAAAATTCTGCAAATAAGAGTTAC-AAATGCCAT  699

seq1  GAAGCAAGAGTCACTATTTTCTGCAGTATGTTCCTTCCATGCCTCTAGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGAGTCACTATTTTCTGCAGTATGTTCCTTCCATGCCTCTAGAC  749

seq1  AAGTGCCACCAGAGTCCCAATCTCAGCTTTACCTGACCATGTCATTTCCT  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AGTGCCACCAGAGTCCCAATCTCAGCTTTACCTGACCATGTCATTTCCT  798

seq1  ATAACTCCCTGGATTCCGTTCTGACCCACACAGCCTCAGGTACCTCCCGA  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATAACTCCCTGGATTCCGTTCTGACCCACACAGCCTCAGGTA-CTCCCGA  847

seq1  CTTCTCTGATTCCTGGAGGCCACCACTCCATAGGTCCAAAATATTTAGGG  899
      ||||||||||||||||||| || ||||||||||||| |||  ||| ||||
seq2  CTTCTCTGATTCCTGGAGG-CAACACTCCATAGGTCAAAATAATTAAGGG  896

seq1  AGTTACCTTATGTTTTAACCTGTATGGTCACCGGTAGACTAGTGCTCCTT  949
      || ||| ||||||||| |||||||| |||||||| |||||||||||||||
seq2  AG-TACTTTATGTTTT-ACCTGTAT-GTCACCGGGAGACTAGTGCTCCTT  943

seq1  CCAAGTAAGGTGT-GGATTTTGGACAACTTCTTGTCTTCTGCATACAATA  998
       ||||||| |||| |||||||||||||||   |||||||||||| |||||
seq2  -CAAGTAA-GTGTGGGATTTTGGACAACT--CTGTCTTCTGCAT-CAATA  988

seq1  CACAGAATCCAACCCTCACCCATTGAAAGGGCAAATTACCAGAGGTCTGT  1048
      |||||||| ||||| ||| |||||| ||||||||  || || | ||||||
seq2  CACAGAAT-CAACCTTCA-CCATTG-AAGGGCAA--TAACA-AAGTCTGT  1032

seq1  TCAAGAGGA  1057
      || ||||||
seq2  TC-AGAGGA  1040