BAC Information

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BAC

Clone NameB6Ng01-049A13
Chromosome4 (Build37)
Map Location 39,226,001 - 39,292,773
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665520, LOC100039487
Downstream gene1700009N14Rik, LOC435775, LOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049A13.bB6Ng01-049A13.g
ACCDH873410DH873411
length8701,138
definitionDH873410|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A13, 5' end.DH873411|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,226,001 - 39,226,724)(39,291,615 - 39,292,773)
sequence
gaattctttgttcagctctgagccccattgattttctggagtccaccttc
ttgagttctttatatatatattggatattattcccctatgcgatttggaa
taggtaaagatcctttcccaatctgttggtggcctttttgtcttattgac
ggtgtcttttgctttgcagaagctttgcaattttatgaggtcccacttat
cgattcttgatcttacagcacaagccattgctgttctattcaggaatttt
tcccctgtacccatatctttgaggcttttccctactttctcctctataag
tttcagtgtctctgattttatgtggagttccttaatccacttagatttga
ccttagtacaaggagatagaaatggatcaattcgcattcttctacatgat
aaccgccagttgtgccagcacaatttgttgaaaatgctgtcttttttcca
ctggatggttttagttcccttgtcaaagatcaagtgaccataggtgtgtg
gattcatctctgggtcttcaattctgttccattggtctacttctctgtca
ctgtaccagtaccatgcagttttgatcacaattgctctgtagtacagctt
taggtccggcatggtgattccaccagaggttcttttatccttgagaagag
ttttatccttgagaagagtttagttctatgctccatttttgcttggatcg
gttttttttgtttgtttgtttggttggttttttttttttttttttttggg
tagcttcttgaattcttatatattttgggatattagccctctagatgagg
tagtgaagattttttcccattctgtagttgtctattgactagtctgtgct
tacagaaactttagtcatga
gaattctttgtgttttaaaattttcctaacagaacatccaggcagaaagc
agactctgtgcttatgaaaagttgtttagtaagacagagcacatgcaaat
attatgttaaaatgtttgcataagaccacatataactattgagcttcata
tctgtcctggaaaataaaatccaaagcgaaagcaatgagtggacacttta
aaatatagagcattgcagcaattactaatcaggaaggatagattacacaa
gtttcgctagactcactatttacttaaacaggcacttaatagtaccagct
tttattggctgtatttacttctggtatagaactgtaaataaaggcatgaa
gtctgagctttcagaaagccaatgtctattagttttgaaagtaactctct
aatgctgtgattgaaataaccattagcataatttaccagccagcacatta
attctgagctgtaggaggaggactctgtggaggaatagaaagtcaggctc
ctctattcaggctgtggtaaggccagcccactctgctttgtcatttaaat
gctcagaaaatcctcgttaaaccaaaagaagggtgtgcagagtctttgtc
ctaaaggatgctctgtatgatccagaatcctgatgacaaccctgtgtatt
ttccataagcttcagattcaaagccgtcttcaatatagtgtgttacgtca
aagattaatggagaatatcctgccattatgcttgctggattcattacaca
ctcatgacttttaatcacactctggcctttgatgtgcagctttctgtgtc
tctctgttaattaccaccctctcctttccccacattagttttccagactt
tgatgactaagcacagtgctctactactgtatccgttgtggagaagagct
gcttttcaaacccaatgccacctcttatgtttagtttagaaaaatgagct
tatgggcttcaataccttttgtcccctttttctagtgactagctttaact
acagctgtcactcctgctgatgtatgtgtgaaccatggaggggagaatcc
aggccatcgattccggtccattgtgctttagcagccagtcaagtacatat
taacatctctgtcagaactgcttttgttgctgtgcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_39226001_39226724
seq2: B6Ng01-049A13.b_203_913

seq1  TGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCACTTATCGATTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCACTTATCGATTCTTG  50

seq1  ATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTA  100

seq1  CCCATATCTTTGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCTTTGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGT  150

seq1  CTCTGATTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTAC  200

seq1  AAGGAGATAGAAATGGATCAATTCGCATTCTTCTACATGATAACCGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATAGAAATGGATCAATTCGCATTCTTCTACATGATAACCGCCAG  250

seq1  TTGTGCCAGCACAATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCAGCACAATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGT  300

seq1  TTTAGTTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGATTCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGATTCATCT  350

seq1  CTGGGTCTTCAATTCTGTTCCATTGGTCTACTTCTCTGTCACTGTACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCTTCAATTCTGTTCCATTGGTCTACTTCTCTGTCACTGTACCAG  400

seq1  TACCATGCAGTTTTGATCACAATTGCTCTGTAGTACAGCTTTAGGTCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGCAGTTTTGATCACAATTGCTCTGTAGTACAGCTTTAGGTCCGG  450

seq1  CATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTATCCT  500

seq1  TGAGAAGAGTTTAGTTCTATGCTCCATTTTTGCTTGGATCGGTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAGTTTAGTTCTATGCTCCATTTTTGCTTGGATCGGTTTTTTTT  550

seq1  GTTTGTTTGTTTGGTTGGTTTTTTTTTTTTTTTTTTTTTGTGGTTAGCTT  600
      |||||||||||||||||||||||||||||||||||||   ||| ||||||
seq2  GTTTGTTTGTTTGGTTGGTTTTTTTTTTTTTTTTTTT---TGGGTAGCTT  597

seq1  CTTGAATTCTTTATATATTTT-GGATATTAGCCCTCTAGATGAGGTTAGT  649
      ||||||||| ||||||||||| ||||||||||||||||||||||| ||||
seq2  CTTGAATTC-TTATATATTTTGGGATATTAGCCCTCTAGATGAGG-TAGT  645

seq1  GAAGATTTTTTTCCCAATCTGTAGGTTGTCTTATTGACTATGTCTGTTGC  699
      ||||| |||||||||| |||||| |||||| ||||||||| ||||||   
seq2  GAAGA-TTTTTTCCCATTCTGTA-GTTGTC-TATTGACTA-GTCTGT--G  689

seq1  CTTACAGAAACTTTCCAGTTCATGA  724
      ||||||||||||||  || ||||||
seq2  CTTACAGAAACTTT--AG-TCATGA  711

seq1: chr4_39291615_39292773
seq2: B6Ng01-049A13.g_67_1204 (reverse)

seq1  CTTGCACAGGCAACAAAAGCAGTGTCTGAC--AGATG-TCATATGGTACC  47
      |||||||| |||||||||||||| ||||||  ||||| | |||| |||| 
seq2  CTTGCACA-GCAACAAAAGCAGT-TCTGACAGAGATGTTAATAT-GTACT  47

seq1  TGACTGGGCTTGGCCAAAAGCACATGTGACTCGGGAATCGATGGGCTGGG  97
      ||||| ||||    | ||||||||   ||  | ||||||||||| || ||
seq2  TGACT-GGCT---GCTAAAGCACAATGGA--CCGGAATCGATGGCCT-GG  90

seq1  ATTCT-CCCTCCATGGTTCACACATACACTCAGCAGGGAGTGACAGGCTG  146
      ||||| |||||||||||||||||||||| |||||| ||||||||| ||||
seq2  ATTCTCCCCTCCATGGTTCACACATACA-TCAGCA-GGAGTGACA-GCTG  137

seq1  TAGTTTAAAGGCTAGTCACTAGAAAAAGGGGGACAAAAGGTATTTGAAGC  196
      |||||  || ||||||||||||||||| |||||||||||||| |||||||
seq2  TAGTT--AAAGCTAGTCACTAGAAAAA-GGGGACAAAAGGTA-TTGAAGC  183

seq1  CCATAAGCTCATTTTTTCTAAAACTTAAAACATAAGAGGTGGCATTGGGT  246
      ||||||||||| ||||||| |||||  |||||||||||||||||||||||
seq2  CCATAAGCTCA-TTTTTCT-AAACT--AAACATAAGAGGTGGCATTGGGT  229

seq1  TTGAAAAGCAGCTCTTCTTCCACAAACGGATAACAGTAGTAGAGCACTGT  296
      ||||||||||||||||| ||||| ||||||| ||||||||||||||||||
seq2  TTGAAAAGCAGCTCTTC-TCCAC-AACGGAT-ACAGTAGTAGAGCACTGT  276

seq1  GCTTAGTCATCAAAGTCTGGAAAACCTAATGTGGGGAAAGGAGAGGGTGG  346
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTTAGTCATCAAAGTCTGGAAAA-CTAATGTGGGGAAAGGAGAGGGTGG  325

seq1  TAATTAACAGAGAGACACAGAAAGCTGCACATCAAAGGCCAGAGTGTGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACAGAGAGACACAGAAAGCTGCACATCAAAGGCCAGAGTGTGAT  375

seq1  TAAAAGTCATGAGTGTGTAATGAATCCAGCAAGCATAATGGCAGGATATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTCATGAGTGTGTAATGAATCCAGCAAGCATAATGGCAGGATATT  425

seq1  CTCCATTAATCTTTGACGTAACACACTATATTGAAGACGGCTTTGAATCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTAATCTTTGACGTAACACACTATATTGAAGACGGCTTTGAATCT  475

seq1  GAAGCTTATGGAAAATACACAGGGTTGTCATCAGGATTCTGGATCATACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTATGGAAAATACACAGGGTTGTCATCAGGATTCTGGATCATACA  525

seq1  GAGCATCCTTTAGGACAAAGACTCTGCACACCCTTCTTTTGGTTTAACGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCCTTTAGGACAAAGACTCTGCACACCCTTCTTTTGGTTTAACGA  575

seq1  GGATTTTCTGAGCATTTAAATGACAAAGCAGAGTGGGCTGGCCTTACCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCTGAGCATTTAAATGACAAAGCAGAGTGGGCTGGCCTTACCAC  625

seq1  AGCCTGAATAGAGGAGCCTGACTTTCTATTCCTCCACAGAGTCCTCCTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAATAGAGGAGCCTGACTTTCTATTCCTCCACAGAGTCCTCCTCC  675

seq1  TACAGCTCAGAATTAATGTGCTGGCTGGTAAATTATGCTAATGGTTATTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTCAGAATTAATGTGCTGGCTGGTAAATTATGCTAATGGTTATTT  725

seq1  CAATCACAGCATTAGAGAGTTACTTTCAAAACTAATAGACATTGGCTTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACAGCATTAGAGAGTTACTTTCAAAACTAATAGACATTGGCTTTC  775

seq1  TGAAAGCTCAGACTTCATGCCTTTATTTACAGTTCTATACCAGAAGTAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTCAGACTTCATGCCTTTATTTACAGTTCTATACCAGAAGTAAA  825

seq1  TACAGCCAATAAAAGCTGGTACTATTAAGTGCCTGTTTAAGTAAATAGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAATAAAAGCTGGTACTATTAAGTGCCTGTTTAAGTAAATAGTG  875

seq1  AGTCTAGCGAAACTTGTGTAATCTATCCTTCCTGATTAGTAATTGCTGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGCGAAACTTGTGTAATCTATCCTTCCTGATTAGTAATTGCTGCA  925

seq1  ATGCTCTATATTTTAAAGTGTCCACTCATTGCTTTCGCTTTGGATTTTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTATATTTTAAAGTGTCCACTCATTGCTTTCGCTTTGGATTTTAT  975

seq1  TTTCCAGGACAGATATGAAGCTCAATAGTTATATGTGGTCTTATGCAAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGACAGATATGAAGCTCAATAGTTATATGTGGTCTTATGCAAAC  1025

seq1  ATTTTAACATAATATTTGCATGTGCTCTGTCTTACTAAACAACTTTTCAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACATAATATTTGCATGTGCTCTGTCTTACTAAACAACTTTTCAT  1075

seq1  AAGCACAGAGTCTGCTTTCTGCCTGGATGTTCTGTTAGGAAAATTTTAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGAGTCTGCTTTCTGCCTGGATGTTCTGTTAGGAAAATTTTAAA  1125

seq1  ACACAAAGAATTC  1159
      |||||||||||||
seq2  ACACAAAGAATTC  1138