BAC Information

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BAC

Clone NameB6Ng01-049A21
Chromosome4 (Build37)
Map Location 87,213,933 - 87,354,976
singlet/doubletdoublet
Overlap genenone
Upstream geneRraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049A21.bB6Ng01-049A21.g
ACCDH873426DH873427
length1,0531,080
definitionDH873426|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A21, 5' end.DH873427|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,213,933 - 87,214,996)(87,353,873 - 87,354,976)
sequence
gaattcaaggccagccagggctacacagagaaatcctgtccccaaaaaca
acaacaacagcaacaacaacaacaacaacaaaaccaaaaaaccaaaccaa
accaaaacaaaacaaaacaaaacagaacaaaacaaaccaacccagaaaac
caagagcttttcattttccttggatacctccacttattagtcattgttca
ataaaatatttctagagttgcctatatttaaacagtaaccagattttgaa
aacaatacatcctgaatgacaggcagctcagagaatcataatgtacacac
tcatctgacaacaggttatttttcagaaaacgttgtgtctcattcagtga
aagaaagtggcccccatagctcatatatttgcatgtttggttcctagttg
gtgggctgtttaggaaggattagaggtgtgaccttgttggagaagcgatg
ccactggaagtaggcttttaggatctaaaaggctatgcccagtctcggtg
cctttctctcttgtgtttgtggataaagtttaagctctcatctactgctc
cagcactatgcctgcctgctgccacaatcatcatggactaaccctctgaa
actgtaagtgtgctcctaattaaatgctctttttataagttgcctcaggc
atggtgtctcttcatagcaatagaacagtgactaagatatgcaaaattga
cactaacctaactcaaaactaggggacaagtaaagaggcaagagtttggc
ccatctctcaggattatactaaaatgaaacaattaggaggaagacagagg
atcaaagaacagggtattaccccgggctgtacatccatgaagctgcagga
ggcttgtgtgtcatcattttgggggcctactcatcttggagcttccagga
tgcaggaactcagcaacatactttttcactctaccttccatatgtgtatg
agaagccatctttttatataaatagcaaactgattctctcaagatagttg
gtaaactcaggcccatttgggacttctaaatatcctgactggttttccaa
gca
gaattcaaagaacagaagtctgccccccctctatctcccgtttactgaaa
ggcaagagtttaacaagctgttatggctggctctgaatgtttgcttggaa
taccctgaagggctgtgtaagatggctccgttgtaaaggtgcttctcact
agggctgagagccggcgtttgatccctgggaatgatagagtgggagaaca
gaaccaaatctgcaagttgttctctgacattcacacacacacacacacac
acacacacacacacacacacaccatgcatacaaacacacatacatacata
aatgcagtaaaaagtttgagaaatattctactctaatgcttgagctttct
aactttcattgtgttggaatattttcgttttccaaatgaagtttatgaag
ttccgtcagaatgtgagcctcatgtgggcaagaatctctgtccggttgtt
caaatttgcatccccagagtccatcacagagttacacgcaagaaatattt
gttgaaggaacatgcaagacctttagctccctttccaacagataagttac
ttggaggaagagtctgattttagataaatacattgataattcatttgtgt
gtgcctttgcctgtctgctcatgtgtctgtacatttattttctataaaga
agggagtttctgggaacagagaggcgaggaccaactaggagccagtgctg
aaagaggaggaaaaggcagagcagtgggaaactagggatttgagcccagg
accatggtgtaggggagccattactcagatagtcatgtgcccaggctaga
ccttcgtgcatctcattgccttgtctgtctacctgccctccagagggatt
ggaggctcatgggtgttttactaaggagactacaaatgtgtctggcttgc
tcttgcttcagaccagctccagtacccctgccaagccagatgtgtgacac
tgaattcatgactcttgcccaatcaagtgtcttccctatctcaatgtgac
tttctaggttacttgcaatctcagtcactaacatgaatattcttgctaag
gctctccaatcattttttttcggaactata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87213933_87214996
seq2: B6Ng01-049A21.b_41_1093

seq1  GAATTCAAGGCCAGCCAGGGCTACACAGAGAAATCCTGTCCCCAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCAGGGCTACACAGAGAAATCCTGTCCCCAAAAACA  50

seq1  ACAACAACAGCAACAACAACAACAACAACAAAACCAAAAAACCAAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAGCAACAACAACAACAACAACAAAACCAAAAAACCAAACCAA  100

seq1  ACCAAAACAAAACAAAACAAAACAGAACAAAACAAACCAACCCAGAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACAAAACAAAACAAAACAGAACAAAACAAACCAACCCAGAAAAC  150

seq1  CAAGAGCTTTTCATTTTCCTTGGATACCTCCACTTATTAGTCATTGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTTTTCATTTTCCTTGGATACCTCCACTTATTAGTCATTGTTCA  200

seq1  ATAAAATATTTCTAGAGTTGCCTATATTTAAACAGTAACCAGATTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATTTCTAGAGTTGCCTATATTTAAACAGTAACCAGATTTTGAA  250

seq1  AACAATACATCCTGAATGACAGGCAGCTCAGAGAATCATAATGTACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACATCCTGAATGACAGGCAGCTCAGAGAATCATAATGTACACAC  300

seq1  TCATCTGACAACAGGTTATTTTTCAGAAAACGTTGTGTCTCATTCAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGACAACAGGTTATTTTTCAGAAAACGTTGTGTCTCATTCAGTGA  350

seq1  AAGAAAGTGGCCCCCATAGCTCATATATTTGCATGTTTGGTTCCTAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTGGCCCCCATAGCTCATATATTTGCATGTTTGGTTCCTAGTTG  400

seq1  GTGGGCTGTTTAGGAAGGATTAGAGGTGTGACCTTGTTGGAGAAGCGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGTTTAGGAAGGATTAGAGGTGTGACCTTGTTGGAGAAGCGATG  450

seq1  CCACTGGAAGTAGGCTTTTAGGATCTAAAAGGCTATGCCCAGTCTCGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGAAGTAGGCTTTTAGGATCTAAAAGGCTATGCCCAGTCTCGGTG  500

seq1  CCTTTCTCTCTTGTGTTTGTGGATAAAGTTTAAGCTCTCATCTACTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTCTTGTGTTTGTGGATAAAGTTTAAGCTCTCATCTACTGCTC  550

seq1  CAGCACTATGCCTGCCTGCTGCCACAATCATCATGGACTAACCCTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTATGCCTGCCTGCTGCCACAATCATCATGGACTAACCCTCTGAA  600

seq1  ACTGTAAGTGTGCTCCTAATTAAATGCTCTTTTTATAAGTTGCCTCAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGTGTGCTCCTAATTAAATGCTCTTTTTATAAGTTGCCTCAGGC  650

seq1  ATGGTGTCTCTTCATAGCAATAGAACAGTGACTAAGATATGCAAAATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTCTCTTCATAGCAATAGAACAGTGACTAAGATATGCAAAATTGA  700

seq1  CACTAACCTAACTCAAAACTAGGGGACAAGTAAAGAGGCAAGAGTTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACCTAACTCAAAACTAGGGGACAAGTAAAGAGGCAAGAGTTTGGC  750

seq1  CCATCTCTCAGGATTTATACTAAAATGAAACAATTAGGAGGAAGACAGAG  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCAGGA-TTATACTAAAATGAAACAATTAGGAGGAAGACAGAG  799

seq1  GATCAAAGAACAGGGTATTACCCCGGGCTGTACATCCATGAAGCTGCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGAACAGGGTATTACCCCGGGCTGTACATCCATGAAGCTGCAGG  849

seq1  AGGCTTGTGTGTCATCATTTTGGGGGCCTACTCATCTTGGAAGCTTCCAG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGCTTGTGTGTCATCATTTTGGGGGCCTACTCATCTTGG-AGCTTCCAG  898

seq1  GATGCAGGAAACTCAGGCAACATTACTTTTTTCACTCTACCTTCCATATG  950
      |||||||| |||||| |||||| ||| |||||||||||||||||||||||
seq2  GATGCAGG-AACTCA-GCAACA-TAC-TTTTTCACTCTACCTTCCATATG  944

seq1  TGTTATGAGAAGCCATCTTTTTATATAAATAGCAAAACTTGATTCTCCAA  1000
      || |||||||||||||||||||||||||||||||||   ||||||||  |
seq2  TG-TATGAGAAGCCATCTTTTTATATAAATAGCAAA--CTGATTCTCTCA  991

seq1  AGATAGTTGGTAAACTCAGCCCCATTTGGGACTTCTAAAATATCCTGGAA  1050
      ||||||||||||||||||| |||||||||||||||| ||||||||||  |
seq2  AGATAGTTGGTAAACTCAGGCCCATTTGGGACTTCT-AAATATCCTG--A  1038

seq1  CT-GTTTTCCAAGCA  1064
      || ||||||||||||
seq2  CTGGTTTTCCAAGCA  1053

seq1: chr4_87353873_87354976
seq2: B6Ng01-049A21.g_61_1140 (reverse)

seq1  TATAGTTACTCAGAAAAAAAAAAAATGGATGTGGGAGGAGGCCTTAGCAG  50
      ||||||   || |||||||||  | ||||        || ||||||||| 
seq2  TATAGT---TCCGAAAAAAAATGATTGGA--------GA-GCCTTAGCAA  38

seq1  ATATATTCATGTTTAGTGACTTGAGTATTTGCAAGTAACCCTAGAAAGTC  100
        ||||||||| |||||||| ||||   |||||||||| |||||||||||
seq2  GAATATTCATG-TTAGTGAC-TGAG--ATTGCAAGTAA-CCTAGAAAGTC  83

seq1  ACATTGAGGATAGGGAAGACACTTGATTTGGGCAAGAGTCATGAATTTCA  150
      ||||||| |||||||||||||||||| |||||||||||||||||| ||||
seq2  ACATTGA-GATAGGGAAGACACTTGA-TTGGGCAAGAGTCATGAA-TTCA  130

seq1  GTGTTCACACATCTGGCTTGGCAGGGGTACTGGAGCTGGTCTGAAGCAAG  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTG-TCACACATCTGGCTTGGCAGGGGTACTGGAGCTGGTCTGAAGCAAG  179

seq1  AGCAAGCCAGACACATTTGTAGTTCTCCCTTAGTAAAACACCCATGAGCC  250
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  AGCAAGCCAGACACATTTGTAG-TCT-CCTTAGTAAAACACCCATGAGCC  227

seq1  TTCCAATCCCTCTGGAGGGCAGGTAGACAGACAAGGCAATGAGATGCACG  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCCAATCCCTCTGGAGGGCAGGTAGACAGACAAGGCAATGAGATGCACG  276

seq1  AAGGTCTAGCCTGGGCACATGACTATCTGAGTAATGGCTCCCCTACACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTAGCCTGGGCACATGACTATCTGAGTAATGGCTCCCCTACACCA  326

seq1  TGGTCCTGGGCTCAAATCCCTAGTTTCCCACTGCTCTGCCTTTTCCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTGGGCTCAAATCCCTAGTTTCCCACTGCTCTGCCTTTTCCTCCT  376

seq1  CTTTCAGCACTGGCTCCTAGTTGGTCCTCGCCTCTCTGTTCCCAGAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCACTGGCTCCTAGTTGGTCCTCGCCTCTCTGTTCCCAGAAACT  426

seq1  CCCTTCTTTATAGAAAATAAATGTACAGACACATGAGCAGACAGGCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTTATAGAAAATAAATGTACAGACACATGAGCAGACAGGCAAAG  476

seq1  GCACACACAAATGAATTATCAATGTATTTATCTAAAATCAGACTCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACAAATGAATTATCAATGTATTTATCTAAAATCAGACTCTTCCT  526

seq1  CCAAGTAACTTATCTGTTGGAAAGGGAGCTAAAGGTCTTGCATGTTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAACTTATCTGTTGGAAAGGGAGCTAAAGGTCTTGCATGTTCCTT  576

seq1  CAACAAATATTTCTTGCGTGTAACTCTGTGATGGACTCTGGGGATGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATATTTCTTGCGTGTAACTCTGTGATGGACTCTGGGGATGCAAA  626

seq1  TTTGAACAACCGGACAGAGATTCTTGCCCACATGAGGCTCACATTCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACAACCGGACAGAGATTCTTGCCCACATGAGGCTCACATTCTGAC  676

seq1  GGAACTTCATAAACTTCATTTGGAAAACGAAAATATTCCAACACAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTCATAAACTTCATTTGGAAAACGAAAATATTCCAACACAATGAA  726

seq1  AGTTAGAAAGCTCAAGCATTAGAGTAGAATATTTCTCAAACTTTTTACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAAGCTCAAGCATTAGAGTAGAATATTTCTCAAACTTTTTACTG  776

seq1  CATTTATGTATGTATGTGTGTTTGTATGCATGGTGTGTGTGTGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGTATGTATGTGTGTTTGTATGCATGGTGTGTGTGTGTGTGTGT  826

seq1  GTGTGTGTGTGTGTGTGTGTGTGAATGTCAGAGAACAACTTGCAGATTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGAATGTCAGAGAACAACTTGCAGATTTG  876

seq1  GTTCTGTTCTCCCACTCTATCATTCCCAGGGATCAAACGCCGGCTCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTCTCCCACTCTATCATTCCCAGGGATCAAACGCCGGCTCTCAG  926

seq1  CCCTAGTGAGAAGCACCTTTACAACGGAGCCATCTTACACAGCCCTTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTGAGAAGCACCTTTACAACGGAGCCATCTTACACAGCCCTTCAG  976

seq1  GGTATTCCAAGCAAACATTCAGAGCCAGCCATAACAGCTTGTTAAACTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCCAAGCAAACATTCAGAGCCAGCCATAACAGCTTGTTAAACTCT  1026

seq1  TGCCTTTCAGTAAACGGGAGATAGAGGGGGGGCAGACTTCTGTTCTTTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCAGTAAACGGGAGATAGAGGGGGGGCAGACTTCTGTTCTTTGA  1076

seq1  ATTC  1104
      ||||
seq2  ATTC  1080