BAC Information

Click to search

BAC

Clone NameB6Ng01-049D18
Chromosome4 (Build37)
Map Location 30,388,507 - 30,538,655
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665185
Downstream geneLOC619906, LOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049D18.bB6Ng01-049D18.g
ACCDH873557DH873558
length7091,162
definitionDH873557|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D18, 5' end.DH873558|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,388,507 - 30,389,218)(30,537,486 - 30,538,655)
sequence
gaattcaaatacactgtaagtaagaaacagcagtctctgccagttaagat
atgttccctaaattaagaagagcaatattattaatctacatttaaaaaat
atttcttatatttttgagattataattacttcttctccttccctttcaat
cccacaaacccctctcgtttaccttccctttctattgctcgaatttctgt
tctcttattacttgttgatcacacacacacacacacacacacacacacac
acacacacacacatatatatatatatataaaatctattttaaaatcatag
ctgatactctcttcctacttcactgttttactgtgttgtttctcaaaata
gctcaggatatttattcggatgccactgaggcttctatatctcttacaca
tcctaaagcagtgactcgctattaactaaatatggaaaatgctcatatta
aatgcataaatctaagttcagtgcccaaatcttatattcaagccttggtt
tcttttgtaaccaattgttaactttgggatatggtaaccctgataaaact
agatatatatgcccacctggtagacttaactcttacatgtgataataaac
tgaaactgtatctctcttaaagctcactcgggcctaagacaacagctgta
gctatacagggaaatataggataatctggtaaatatgggatgatgggtac
atataattt
gaattcacatttcatgcagtaagcccggaagaaaccaatggttgtcgagg
tcatccaggtccatgttatggtaatgaaaagattagttctccctgggaag
acaggaagggctagaggaccctttcttgggattctaactattattctttc
ttatgtttctctcctcttctgctggagtatacaggaagtgaagcatgttg
gagtgtggctttatagtgtgacaatgattttggggtgactcatgttcctg
taagttccccttcagtcttgttctgagtctaggaatccctcattccactg
agctgagttttgctacatcatttagttttgtcactgatgatctctacaga
atagatagatcttagatcccgtctctacatgaaaagttcacatacgagca
tatatcttttaaactgacataaatataattgcatttctttatatttatat
gcaaagattgaattccacacttgtaaatatgcttttattttattttgaat
tctgaatacatataaaggatttcagatacattcaaataactctacgagca
tttttagctcctactggttttcaaatgtatttccgtgccattcttctaaa
ttaatatcattattatattttagtgttttgcataatctactggcagccat
gatcaattaaagagagagaagagattcaaggctgaaaagtctcagtgtct
tatttcagaataagtaaataaatcatgcctgaatttgagatcttggagtt
gtgctcatcagaattgagttctctcttgcacaagcaggaatgctaatgca
gactgatggcttagatgactaagtgccaaaccttgtatgttgctgcaagg
ctgtttgtggagtgtcagagccgctgcccttccacatgcctgtggttata
atacaacgtagcagaagtgtgtcactagtagcaggaggacatggctaaat
gcctgtcagctactctaccatgcccgtttcctaaggttctaaatacagtt
ttgtactgatgcttaatttcatggcatttgttttccaattggtggattta
acgtgctcttgtagagctctcaaaaaaagaatcataaataatttgtgtca
actcattttgccttagagtgtgtgaccggcacttcactttgtttagggat
tggtgtgagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_30388507_30389218
seq2: B6Ng01-049D18.b_45_753

seq1  GAATTCAAATACACTGTAAGTAAGAAACAGCAGTCTCTGCCAGTTAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATACACTGTAAGTAAGAAACAGCAGTCTCTGCCAGTTAAGAT  50

seq1  ATGTTCCCTAAATTAAGAAGAGCAATATTATTAATCTACATTTAAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCCTAAATTAAGAAGAGCAATATTATTAATCTACATTTAAAAAAT  100

seq1  ATTTCTTATATTTTTGAGATTATAATTACTTCTTCTCCTTCCCTTTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATATTTTTGAGATTATAATTACTTCTTCTCCTTCCCTTTCAAT  150

seq1  CCCACAAACCCCTCTCGTTTACCTTCCCTTTCTATTGCTCGAATTTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAACCCCTCTCGTTTACCTTCCCTTTCTATTGCTCGAATTTCTGT  200

seq1  TCTCTTATTACTTGTTGATCACACACACACACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATTACTTGTTGATCACACACACACACACACACACACACACACAC  250

seq1  ACACACACACACATATATATATATATATAAAATCTATTTTAAAATCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACATATATATATATATATAAAATCTATTTTAAAATCATAG  300

seq1  CTGATACTCTCTTCCTACTTCACTGTTTTACTGTGTTGTTTCTCAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACTCTCTTCCTACTTCACTGTTTTACTGTGTTGTTTCTCAAAATA  350

seq1  GCTCAGGATATTTATTCGGATGCCACTGAGGCTTCTATATCTCTTACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGATATTTATTCGGATGCCACTGAGGCTTCTATATCTCTTACACA  400

seq1  TCCTAAAGCAGTGACTCGCTATTAACTAAATATGGAAAATGCTCATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGCAGTGACTCGCTATTAACTAAATATGGAAAATGCTCATATTA  450

seq1  AATGCATAAATCTAAGTTCAGTGCCCAAATCTTATATTCAAGCCTTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATAAATCTAAGTTCAGTGCCCAAATCTTATATTCAAGCCTTGGTT  500

seq1  TCTTTTGTAACCAATTGTTAACTTTGGGATATGGTAACCCAAATAAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||  |||||| |
seq2  TCTTTTGTAACCAATTGTTAACTTTGGGATATGGTAACCCTGATAAAACT  550

seq1  AGTTATATATGCCCACCTGGTAGAATTAACTCTTACATGTGATAATAAAC  600
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGATATATATGCCCACCTGGTAGACTTAACTCTTACATGTGATAATAAAC  600

seq1  TAAAACTGTATCTCTCTTAAAGCTCAAAGGGGCCTAATACAACAAACTAT  650
      | ||||||||||||||||||||||||   |||||||| ||||| | || |
seq2  TGAAACTGTATCTCTCTTAAAGCTCACTCGGGCCTAAGACAAC-AGCTGT  649

seq1  AGCTATAAAGGGAAATATAGGAATAATCTGTTCATTATGGAAATGATGGG  700
      ||||||| ||||||||||||| |||||||| | | |||||  ||||||||
seq2  AGCTATACAGGGAAATATAGG-ATAATCTGGTAAATATGG-GATGATGGG  697

seq1  TACATAAAATTT  712
      |||||| |||||
seq2  TACATATAATTT  709

seq1: chr4_30537486_30538655
seq2: B6Ng01-049D18.g_65_1226 (reverse)

seq1  TTTCT-ACACCAATACCCATAACAAAGTGAAGTGCC-GTCACACAC-CTA  47
      ||||| |||||||| |||  |||||||||||||||| ||||||||| |||
seq2  TTTCTCACACCAAT-CCCTAAACAAAGTGAAGTGCCGGTCACACACTCTA  49

seq1  TAGCAAAATAGAGTAGACACAATATAATTTTATAGATTCTTTTTGTGAGA  97
        ||||||| |||| |||||||  ||  ||||| |||||||||| |||||
seq2  AGGCAAAAT-GAGTTGACACAAATTA--TTTAT-GATTCTTTTTTTGAGA  95

seq1  TGCT-ACCATGAGCAACGTTAAAATACAACAAATTGGGAAACAAATGCCA  146
       |||   || |||| ||||||||   | || |||||| ||||||||||||
seq2  -GCTCTACAAGAGC-ACGTTAAA--TCCACCAATTGGAAAACAAATGCCA  141

seq1  TGAAATTAAGCATTAAGTACAAAACTGTATTTAGAACCTTAGGAAACGGG  196
      |||||||||||| | |||||||||||||||||||||||||||||||| ||
seq2  TGAAATTAAGCA-TCAGTACAAAACTGTATTTAGAACCTTAGGAAAC-GG  189

seq1  GCATGGTAGAGTAGCTGACAGGCATTTAGCCATGTCCTCCCTGCTACTAG  246
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCATGGTAGAGTAGCTGACAGGCATTTAGCCATGTCCT-CCTGCTACTAG  238

seq1  TGACACACTTCTGCCTACGTTGTATTATAACCACAGGCATGTGGAAGGGC  296
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGACACACTTCTG-CTACGTTGTATTATAACCACAGGCATGTGGAAGGGC  287

seq1  AGCGGCTCTGACACTCCACAAACAGCCTTGCAGCAACATACAAGGTTTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCTCTGACACTCCACAAACAGCCTTGCAGCAACATACAAGGTTTGG  337

seq1  CACTTAGTCATCTAAGCCATCAGTCTGCATTAGCATTCCTGCTTGTGCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGTCATCTAAGCCATCAGTCTGCATTAGCATTCCTGCTTGTGCAA  387

seq1  GAGAGAACTCAATTCTGATGAGCACAACTCCAAGATCTCAAATTCAGGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACTCAATTCTGATGAGCACAACTCCAAGATCTCAAATTCAGGCA  437

seq1  TGATTTATTTACTTATTCTGAAATAAGACACTGAGACTTTTCAGCCTTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATTTACTTATTCTGAAATAAGACACTGAGACTTTTCAGCCTTGA  487

seq1  ATCTCTTCTCTCTC-TTAATTGATCATGGCTGCCAGTAGATTATGCAAAA  545
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCTCTCTCTTTAATTGATCATGGCTGCCAGTAGATTATGCAAAA  537

seq1  CACTAAAATATAATAATGATATTAATTTAGAAGAATGGCACGGAAATACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAATATAATAATGATATTAATTTAGAAGAATGGCACGGAAATACA  587

seq1  TTTGAAAACCAGTAGGAGCTAAAAATGCTCGTAGAGTTATTTGAATGTAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACCAGTAGGAGCTAAAAATGCTCGTAGAGTTATTTGAATGTAT  637

seq1  CTGAAATCCTTTATATGTATTCAGAATTCAAAATAAAATAAAAGCATATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCCTTTATATGTATTCAGAATTCAAAATAAAATAAAAGCATATT  687

seq1  TACAAGTGTGGAATTCAATCTTTGCATATAAATATAAAGAAATGCAATTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTGTGGAATTCAATCTTTGCATATAAATATAAAGAAATGCAATTA  737

seq1  TATTTATGTCAGTTTAAAAGATATATGCTCGTATGTGAACTTTTCATGTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTCAGTTTAAAAGATATATGCTCGTATGTGAACTTTTCATGTA  787

seq1  GAGACGGGATCTAAGATCTATCTATTCTGTAGAGATCATCAGTGACAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGGATCTAAGATCTATCTATTCTGTAGAGATCATCAGTGACAAAA  837

seq1  CTAAATGATGTAGCAAAACTCAGCTCAGTGGAATGAGGGATTCCTAGACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGATGTAGCAAAACTCAGCTCAGTGGAATGAGGGATTCCTAGACT  887

seq1  CAGAACAAGACTGAAGGGGAACTTACAGGAACATGAGTCACCCCAAAATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAGACTGAAGGGGAACTTACAGGAACATGAGTCACCCCAAAATC  937

seq1  ATTGTCACACTATAAAGCCACACTCCAACATGCTTCACTTCCTGTATACT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCACACTATAAAGCCACACTCCAACATGCTTCACTTCCTGTATACT  987

seq1  CCAGCAGAAGAGGAGAGAAACATAAGAAAGAATAATAGTTAGAATCCCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAAGAGGAGAGAAACATAAGAAAGAATAATAGTTAGAATCCCAA  1037

seq1  GAAAGGGTCCTCTAGCCCTTCCTGTCTTCCCAGGGAGAACTAATCTTTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTCCTCTAGCCCTTCCTGTCTTCCCAGGGAGAACTAATCTTTTC  1087

seq1  ATTACCATAACATGGACCTGGATGACCTCGACAACCATTGGTTTCTTCCG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCATAACATGGACCTGGATGACCTCGACAACCATTGGTTTCTTCCG  1137

seq1  GGCTTACTGCATGAAATGTGAATTC  1170
      |||||||||||||||||||||||||
seq2  GGCTTACTGCATGAAATGTGAATTC  1162