BAC Information

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BAC

Clone NameB6Ng01-049M06
Chromosome4 (Build37)
Map Location 94,602,000 - 94,728,519
singlet/doubletdoublet
Overlap geneLOC100039252, Mysm1, LOC100039265, LOC665029, Jun
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik
Downstream geneLOC100042411, 2310009E04Rik, Hook1, Cyp2j13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049M06.bB6Ng01-049M06.g
ACCDH873934DH873935
length1,0561,074
definitionDH873934|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M06, 5' end.DH873935|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,727,429 - 94,728,519)(94,602,000 - 94,603,119)
sequence
gaattctagcctaaataacattggaaaagcacagaagacaaactcagatt
gttctagtctctggggctgctgatcattgctccaatgggatagaggatgc
agatccagggcatgcaaacctccaagcatttgggtgttcactggaagcat
catcacagtttagccatgggccagaatgctgaaggaatgtatggcttgaa
agaattactgggaacagcagccttcctgacgtatcgcttgcttcccctct
aactgccaaatctgtaagaatgggtacacagtgtcacagagaagatatgt
ctctgcagcagagtggactgagaaccatcctctgggcagagaaggttatt
atgtagggaagtatcatagaatctgtgtcctgatttctccaagctctata
ctccatacacacaaacacaacaaggttgggtcctattgagcgtgtaagct
tcttgagatacaccccctctttctagaataggtcctctctgaggcctcct
cttctcctagctatttccacctactttggaaggttctgcttattaactag
tttctctaaagcactttcttccacctctttccttaacagagaggcccttc
cacataggaatcctgtaacgcaaagcattatcatgctggattatcccatc
ttctctcttatctattttccttgctgtacctcaaccaatgagcatgcccg
gaagctcttgtttagcaatgtttaccagttgctaaatgaaataaacactc
aaaatattgaatatattaataaaatgttaacaatatgtgccacttgcatt
ctgaaatccatctgaaaagcacctggcatttcataaacgcccactcgaga
tgagaacagaaaaagcaaagacatacctgacatacctcagaagcttacac
gcttaatagacatatgctagtgttatgacctgcgatttgagctgaaggaa
agatgtgaatagattaaccatacacatgctaaatgccttgtaaggcttgc
acgagtcagagtataggaagattaatttcctaggatgatgttcgtgacca
tcaaga
gaattctgatcatctagtaaatacatggacacactagggcagcagggagc
attgctctgtttctgcactattatgtaaatatccagatgcactgttctca
taatatattcatgtgtacagagctgttccaatgctaaggttcggtacccc
aattggttcttcatctgtcagtaaagaaatctggaggtcaactgctggga
ggaaggcagaggtgagacttccaggttccaggaggaaagggcagttgcaa
ggaaggggagtctttctgccatgctttggagaagccagagccatgtgagg
tcttgggaggagctggggcttgtggcattgcaggccgaggagaatctcgg
catggtgatgatcttcaccctcgtgacagctgttcaagaaaagttaaatg
aaatagttgatcagatcaaaacaagaagagaggaagaaaagaagcagaaa
gaaaaggaagcagaagaagcagagaagaaactgttccatggcacccctgt
tacgattgagaatttcttgagttggaaggccaaatttgatgcagaactcc
tggaaattaaaaagaaacgaatgaaagaagaggagcaagcagggaaaaat
aaactaagtgggaaacagttatttgaaacagatcataatcttgacacatc
tgatatccagttcctggaggatgctgggaacaatgtggaggtggatgagt
cattgttccaagaaatggacgatttggagctagaagatggtgaagatgat
cctgactacaatcctgttgccccagggagtgactcctcagactgatggac
tgtcccagtctcagagaggcgtgaccgccacagcatctgtggctatgcta
gagggtttggatcttcctttgttttttctaagaaaaacatatttttcaga
gatattctctgatacttcatcattgacttaataactgccataaatttcaa
aaaaaaaaaaggagatagcagtgatgatctagcattttaacgtactaaac
aactggttgctcttaaccatgagtcatgcatgtggaactgtgcattttta
aattggaatcacacagattgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_94727429_94728519
seq2: B6Ng01-049M06.b_40_1095 (reverse)

seq1  TCTTGATGGTCACGGAACATCTACTCCTAGGAAAATAAAC--ACTTTACA  48
      ||||||||||||| |||||||   |||||||||| ||| |   || ||| 
seq2  TCTTGATGGTCAC-GAACATC--ATCCTAGGAAATTAATCTTCCTATAC-  46

seq1  TATGACACTTGACCACATTACAAAGCCTACCAAGGCATTTAAGCATGTGT  98
      | |||| | ||           ||||||  |||||||||| |||||||||
seq2  TCTGACTCGTG----------CAAGCCTTACAAGGCATTT-AGCATGTGT  85

seq1  ATAGATATATCTATTCCACATCTCTCCTTTACAGCTCCAAATACGCCCTG  148
      || | || ||||||| ||||||| |||||  ||||| ||||| |||    
seq2  ATGGTTA-ATCTATT-CACATCTTTCCTT--CAGCT-CAAAT-CGC---A  126

seq1  GTTCATAACACCTAAGCCTTATTGTCCTATTGAGCGTGTAAGCTTCTTGA  198
      | |||||||||   ||| |   ||| ||||| |||||||||||||| |||
seq2  GGTCATAACAC--TAGCAT--ATGT-CTATTAAGCGTGTAAGCTTC-TGA  170

seq1  GGTATGTCAGGTATGTCTTTGCCTTTTTCTGTTTCTCATCTTCGAGTGGG  248
      ||||||||||||||||||||| ||||||||| |||||||| |||||||||
seq2  GGTATGTCAGGTATGTCTTTG-CTTTTTCTG-TTCTCATC-TCGAGTGGG  217

seq1  CGTTTATTGAAATGCCAGGTGCTTTTCAGATGGATTTCAGAATGCAAGTG  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTA-TGAAATGCCAGGTGCTTTTCAGATGGATTTCAGAATGCAAGTG  266

seq1  GCACATATTGTTAAACATTTTATTAATATATTCAATATTTTTGAGTGTTT  348
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  GCACATATTGTT-AACATTTTATTAATATATTCAATA-TTTTGAGTGTTT  314

seq1  ATTTCATTTTAGCAACTGGTAAACATTGCTAAACAAGAGCTTCCGGGCAT  398
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCA-TTTAGCAACTGGTAAACATTGCTAAACAAGAGCTTCCGGGCAT  363

seq1  GCTCATTGGTTGAGGTACAGCAAGGAAAATAGATAAGAGAGAAGATGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTGGTTGAGGTACAGCAAGGAAAATAGATAAGAGAGAAGATGGGA  413

seq1  TAATCCAGCATGATAATGCTTTGCGTTACAGGATTCCTATGTGGAAGGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGCATGATAATGCTTTGCGTTACAGGATTCCTATGTGGAAGGGC  463

seq1  CTCTCTGTTAAGGAAAGAGGTGGAAGAAAGTGCTTTAGAGAAACTAGTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTTAAGGAAAGAGGTGGAAGAAAGTGCTTTAGAGAAACTAGTTA  513

seq1  ATAAGCAGAACCTTCCAAAGTAGGTGGAAATAGCTAGGAGAAGAGGAGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAGAACCTTCCAAAGTAGGTGGAAATAGCTAGGAGAAGAGGAGGC  563

seq1  CTCAGAGAGGACCTATTCTAGAAAGAGGGGGTGTATCTCAAGAAGCTTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAGGACCTATTCTAGAAAGAGGGGGTGTATCTCAAGAAGCTTAC  613

seq1  ACGCTCAATAGGACCCAACCTTGTTGTGTTTGTGTGTATGGAGTATAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCAATAGGACCCAACCTTGTTGTGTTTGTGTGTATGGAGTATAGAG  663

seq1  CTTGGAGAAATCAGGACACAGATTCTATGATACTTCCCTACATAATAACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGAAATCAGGACACAGATTCTATGATACTTCCCTACATAATAACC  713

seq1  TTCTCTGCCCAGAGGATGGTTCTCAGTCCACTCTGCTGCAGAGACATATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCCCAGAGGATGGTTCTCAGTCCACTCTGCTGCAGAGACATATC  763

seq1  TTCTCTGTGACACTGTGTACCCATTCTTACAGATTTGGCAGTTAGAGGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGACACTGTGTACCCATTCTTACAGATTTGGCAGTTAGAGGGG  813

seq1  AAGCAAGCGATACGTCAGGAAGGCTGCTGTTCCCAGTAATTCTTTCAAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCGATACGTCAGGAAGGCTGCTGTTCCCAGTAATTCTTTCAAGC  863

seq1  CATACATTCCTTCAGCATTCTGGCCCATGGCTAAACTGTGATGATGCTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTCCTTCAGCATTCTGGCCCATGGCTAAACTGTGATGATGCTTC  913

seq1  CAGTGAACACCCAAATGCTTGGAGGTTTGCATGCCCTGGATCTGCATCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACACCCAAATGCTTGGAGGTTTGCATGCCCTGGATCTGCATCCT  963

seq1  CTATCCCATTGGAGCAATGATCAGCAGCCCCAGAGACTAGAACAATCTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCATTGGAGCAATGATCAGCAGCCCCAGAGACTAGAACAATCTGA  1013

seq1  GTTTGTCTTCTGTGCTTTTCCAATGTTATTTAGGCTAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTCTGTGCTTTTCCAATGTTATTTAGGCTAGAATTC  1056

seq1: chr4_94602000_94603119
seq2: B6Ng01-049M06.g_68_1141

seq1  GAATTCTGATCATCTAGTAAATACATGGACACACTAGGGCAGCAGGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCATCTAGTAAATACATGGACACACTAGGGCAGCAGGGAGC  50

seq1  ATTGCTCTGTTTCTGCACTATTATGTAAATATCCAGATGCACTGTTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTGTTTCTGCACTATTATGTAAATATCCAGATGCACTGTTCTCA  100

seq1  TAATATATTCATGTGTACAGAGCTGTTCCAATGCTAAGGTTCGGTACCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTCATGTGTACAGAGCTGTTCCAATGCTAAGGTTCGGTACCCC  150

seq1  AATTGGTTCTTCATCTGTCAGTAAAGAAATCTGGAGGTCAACTGCTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTTCTTCATCTGTCAGTAAAGAAATCTGGAGGTCAACTGCTGGGA  200

seq1  GGAAGGCAGAGGTGAGACTTCCAGGTTCCAGGAGGAAAGGGCAGTTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGAGGTGAGACTTCCAGGTTCCAGGAGGAAAGGGCAGTTGCAA  250

seq1  GGAAGGGGAGTCTTTCTGCCATGCTTTGGAGAAGCCAGAGCCATGTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGAGTCTTTCTGCCATGCTTTGGAGAAGCCAGAGCCATGTGAGG  300

seq1  TCTTGGGAGGAGCTGGGGCTTGTGGCATTGCAGGCCGAGGAGAATCTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGAGGAGCTGGGGCTTGTGGCATTGCAGGCCGAGGAGAATCTCGG  350

seq1  CATGGTGATGATCTTCACCCTCGTGACAGCTGTTCAAGAAAAGTTAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGATGATCTTCACCCTCGTGACAGCTGTTCAAGAAAAGTTAAATG  400

seq1  AAATAGTTGATCAGATCAAAACAAGAAGAGAGGAAGAAAAGAAGCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTGATCAGATCAAAACAAGAAGAGAGGAAGAAAAGAAGCAGAAA  450

seq1  GAAAAGGAAGCAGAAGAAGCAGAGAAGAAACTGTTCCATGGCACCCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAAGCAGAAGAAGCAGAGAAGAAACTGTTCCATGGCACCCCTGT  500

seq1  TACGATTGAGAATTTCTTGAGTTGGAAGGCCAAATTTGATGCAGAACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATTGAGAATTTCTTGAGTTGGAAGGCCAAATTTGATGCAGAACTCC  550

seq1  TGGAAATTAAAAAGAAACGAATGAAAGAAGAGGAGCAAGCAGGGAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTAAAAAGAAACGAATGAAAGAAGAGGAGCAAGCAGGGAAAAAT  600

seq1  AAACTAAGTGGGAAACAGTTATTTGAAACAGATCATAATCTTGACACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGTGGGAAACAGTTATTTGAAACAGATCATAATCTTGACACATC  650

seq1  TGATATCCAGTTCCTGGAGGATGCTGGGAACAATGTGGAGGTGGATGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCCAGTTCCTGGAGGATGCTGGGAACAATGTGGAGGTGGATGAGT  700

seq1  CATTGTTCCAAGAAATGGACGATTTGGAGCTAGAAGATGGTGAAGATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCCAAGAAATGGACGATTTGGAGCTAGAAGATGGTGAAGATGAT  750

seq1  CCTGACTACAATCCTGTTGCCCCAGGGAGTGACTCCTCAGACTGATGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTACAATCCTGTTGCCCCAGGGAGTGACTCCTCAGACTGATGGAC  800

seq1  TGTCCCAGTCTCCAGAGAGGCGTGACCGCCACAGCATCTGTGGCTATGCT  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGTCT-CAGAGAGGCGTGACCGCCACAGCATCTGTGGCTATGCT  849

seq1  AGAGGGTTTGGATCTTCCTTTTGTTTTTTTCTAAGAAAAAACATATTTTT  900
      |||||||||||||||||||||   ||||||||||| ||||||||||||||
seq2  AGAGGGTTTGGATCTTCCTTT--GTTTTTTCTAAG-AAAAACATATTTTT  896

seq1  CAGGAGAATATTCTTCTGATAACTTTCATCATTGAACTTAATAAACTGCC  950
      || ||| |||||| |||||||   |||||||||| ||||||| ||||| |
seq2  CA-GAG-ATATTC-TCTGATA--CTTCATCATTG-ACTTAAT-AACTG-C  938

seq1  CATAAAATTTCAAAAAAAAAAAAAAAAAAAAAAAGGAGATAGCAGTGATG  1000
      ||| |||||||           ||||||||||||||||||||||||||||
seq2  CAT-AAATTTC-----------AAAAAAAAAAAAGGAGATAGCAGTGATG  976

seq1  ATCTAGCAATATTTTAACCGTACTAAAAACAACTGGGTTTTGCTCTTTAA  1050
      |||||||   ||||||| ||||||  ||||||||||   ||||||||  |
seq2  ATCTAGC---ATTTTAA-CGTACT--AAACAACTGG---TTGCTCTT--A  1015

seq1  ACCATGAAGTTCATGCATTGTGAACTTTGTTGCATTTTTTTAAAAATTGT  1100
      |||||||   ||||||||   |||||    |||||||||    |||||| 
seq2  ACCATGA--GTCATGCATGTGGAACT---GTGCATTTTT----AAATTG-  1055

seq1  GAATCAACCATGATTGTGTA  1120
      ||||||  || |||||||||
seq2  GAATCACACA-GATTGTGTA  1074