BAC Information

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BAC

Clone NameB6Ng01-049M21
Chromosome4 (Build37)
Map Location 86,096,939 - 86,220,306
singlet/doubletdoublet
Overlap gene4930500O09Rik
Upstream geneA930009N24, LOC668052, Adamtsl1
Downstream geneRraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049M21.bB6Ng01-049M21.g
ACCDH873961DH873962
length1,0471,054
definitionDH873961|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M21, 5' end.DH873962|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,219,266 - 86,220,306)(86,096,939 - 86,098,036)
sequence
gaattcaattcctaacaaccacatgaaggctcacaagcatctgtgtagct
acagtgtactcatatacataaaaaaagacaatttaaaagtaatcattgtt
gcaggatatttgatcacactgaaccctgagagtgtattgtttactaaaag
acaaacaaaaacaaaaaaacgatttctagttgtgatgtggctcagtcata
gcacacacctttaattcctctggttagaatacagatatgcccttagaaca
cacttttaatcccaaacagtgaaggtaaagttagtttgtagaagaaagca
ccttgtttgaaagttatgtctaattgagtggcagacaaagtaacaaatca
gagaaagatttgacagaataggctacacccagctctcaagaggagagggg
aaagaggttacataaccaatagcagcacacacacacacacacacacacac
acagagagagagagagagagagagagagagaaagagagaatctaccagga
cagttacaaagagaaaaggttgaaaagagagagcaagctaaacacagggg
aaggcagaggagccagagactgagaaggagtcagaagattagaacagatt
gccaaaatcagtatgaggccaagcagagcaattaagaaaaggccgagaga
gagaagccagatttgaatcagtcagtttggagaggagttttgagccagaa
cagcttgagttgaccagccagccagagatcagaacaggaaaaggtgagct
tattcagcagtaagtctcacaggcaggaaacattctagccctagattaga
ttgtatggaagctagaagcttctaggacctggcctatgttagcagacaga
gacagttagcctttggggaatgacaattaggagtaagaaagatacatttt
acaagccattgctcccttttatgcattattaagtagtggtgtgtgcgtgt
gcatgtgcacgtgcatgttatgttggaatagatgtctacttagggctgca
attcagtagtgactctcagttctttgaacagtatgagatctctgcac
gaattcaattagaattcataaaattagattttaaaaagtcatggtaaaaa
aaaaagtcagcaaagtggaagaggacagcagaagtagtgaagaaaatgtc
agcaatatagaaggaaaattcagcaaggaagttgagattcttctttaaag
ggaaatattggaaatgaaaacacagtgaattaaagaatgtagaggaaaac
tgttacccactgactcaaccaagtgaaagaaaccatataatttatggagg
acagagtatgcactgacataccaataaggaggctggggaggtagatggct
cagtgcttaagagtgcttactgctcttgcagagaactagagttcagttcc
cagcacctgtgtagggcagctcacaaccacacttgtaactatctgcagag
gcaccaactccctcttctgacttccatggaccaccacacacggagagaga
cttacacctacataagtaaaaataaacttttctatagtcaaataaatgtc
aatacggacaaatagacaaatcagcatgagcacaatgcccaagacctcta
agatgggatcatgagaacaaacctgagaatccatatgatagaaggagcca
aacactttactgcttgggaattcacaaaccattcagtgaaattacagcaa
agccattccaaactttggatggggtatgcattctaaaaccagaggcatat
aaaaccccaatagaactacatccccagacattatatagtcaacttgccca
aaaaaacaaaaaacaaaaagaaaaaaaagcaaaagccattattagtaaga
gagcacaccaactcacaaaggcagaaacataagaataacatcggctccaa
ggtcagtaaactcaagctagcactttctaactttctaagcatggactgat
atatacttcacccccgaaagtagtaacagtcacagcatgcatgtacagga
aattatctttagatgtgaagacaaggctcttcaaaaataaaaataaaaaa
gttcagcccactacgaagagtaagaatacatttgagaaataaatacgctc
gatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_86219266_86220306
seq2: B6Ng01-049M21.b_47_1093 (reverse)

seq1  GTGCAGAGA-CTCATAACTGGTCAAAGAACTGAGAGTGACTACTGAATGG  49
      ||||||||| ||||| |||| |||||||||||||||| |||||||||| |
seq2  GTGCAGAGATCTCAT-ACTGTTCAAAGAACTGAGAGTCACTACTGAATTG  49

seq1  CCAGCCCTAAGTAAGACATCTATTTCAACAT-ACATGCACGTGCACATGC  98
       ||||||||||| ||||||||||| |||||| ||||||||||||||||||
seq2  -CAGCCCTAAGT-AGACATCTATTCCAACATAACATGCACGTGCACATGC  97

seq1  ACACGCACACA-CACTAACTAAATAATGCATAAAAGGGAGCAATGGCTTG  147
      ||||||||||| |||| ||| |||||||||||||||||||||||||||||
seq2  ACACGCACACACCACT-ACTTAATAATGCATAAAAGGGAGCAATGGCTTG  146

seq1  T-AAATGTATCTTTTCTACTCCT-ATTGTCAT--CCCCAAGGCTTACTGT  193
      | ||||||||||||  ||||||| ||||||||  ||| |||||| |||||
seq2  TAAAATGTATCTTTCTTACTCCTAATTGTCATTCCCCAAAGGCTAACTGT  196

seq1  CTCTGTCTGCTAACCTAGGCCAGGTCCTAGAAGCTTCTAGCTTCCATACA  243
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGCTAACATAGGCCAGGTCCTAGAAGCTTCTAGCTTCCATACA  246

seq1  ATCTAATCTAGGGCTAGAATGTTTCCTGCCTGTGAGACTTACTGCTGAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATCTAGGGCTAGAATGTTTCCTGCCTGTGAGACTTACTGCTGAAT  296

seq1  AAGCTCACCTTTTCCTGTTCTGATCTCTGGCTGGCTGGTCAACTC-AGCT  342
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGCTCACCTTTTCCTGTTCTGATCTCTGGCTGGCTGGTCAACTCAAGCT  346

seq1  GTTCTGGCTC-AAACTCCTCTCCAAACTGACTGATTC-AATCTGGCTTCT  390
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  GTTCTGGCTCAAAACTCCTCTCCAAACTGACTGATTCAAATCTGGCTTCT  396

seq1  CTCTCTCGGCCTTTTCTTAATTGCTCTGCTTGGCCTCATACTGATTTTGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCGGCCTTTTCTTAATTGCTCTGCTTGGCCTCATACTGATTTTGG  446

seq1  CAATCTGTTCTAATCTTCTGACTCCTTCTCAGTCTCTGGCTCCTCTGCCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGTTCTAATCTTCTGACTCCTTCTCAGTCTCTGGCTCCTCTGCCT  496

seq1  TCCCCTGTGTTTAGCTTGCTCTCTCTTTTCAACCTTTTCTCTTTGTAACT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTGTTTAGCTTGCTCTCTCTTTTCAACCTTTTCTCTTTGTAACT  546

seq1  GTCCTGGTAGATTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTAGATTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG  596

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGCTGCTATTGGTTATGTAACCTCTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGCTGCTATTGGTTATGTAACCTCTT  646

seq1  TCCCCTCTCCTCTTGAGAGCTGGGTGTAGCCTATTCTGTCAAATCTTTCT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTCCTCTTGAGAGCTGGGTGTAGCCTATTCTGTCAAATCTTTCT  696

seq1  CTGATTTGTTACTTTGTCTGCCACTCAATTAGACATAACTTTCAAACAAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGTTACTTTGTCTGCCACTCAATTAGACATAACTTTCAAACAAG  746

seq1  GTGCTTTCTTCTACAAACTAACTTTACCTTCACTGTTTGGGATTAAAAGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTCTTCTACAAACTAACTTTACCTTCACTGTTTGGGATTAAAAGT  796

seq1  GTGTTCTAAGGGCATATCTGTATTCTAACCAGAGGAATTAAAGGTGTGTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTAAGGGCATATCTGTATTCTAACCAGAGGAATTAAAGGTGTGTG  846

seq1  CTATGACTGAGCCACATCACAACTAGAAATCGTTTTTTTGTTTTTGTTTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACTGAGCCACATCACAACTAGAAATCGTTTTTTTGTTTTTGTTTG  896

seq1  TCTTTTAGTAAACAATACACTCTCAGGGTTCAGTGTGATCAAATATCCTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGTAAACAATACACTCTCAGGGTTCAGTGTGATCAAATATCCTG  946

seq1  CAACAATGATTACTTTTAAATTGTCTTTTTTTATGTATATGAGTACACTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGATTACTTTTAAATTGTCTTTTTTTATGTATATGAGTACACTG  996

seq1  TAGCTACACAGATGCTTGTGAGCCTTCATGTGGTTGTTAGGAATTGAATT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACACAGATGCTTGTGAGCCTTCATGTGGTTGTTAGGAATTGAATT  1046

seq1  C  1041
      |
seq2  C  1047

seq1: chr4_86096939_86098036
seq2: B6Ng01-049M21.g_66_1119

seq1  GAATTCAATTAGAATTCATAAAATTAGATTTTAAAAAGTCATGGTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAGAATTCATAAAATTAGATTTTAAAAAGTCATGGTAAAAA  50

seq1  AAAAAGTCAGCAAAGTGGAAGAGGACAGCAGAAGTAGTGAAGAAAATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCAGCAAAGTGGAAGAGGACAGCAGAAGTAGTGAAGAAAATGTC  100

seq1  AGCAATATAGAAGGAAAATTCAGCAAGGAAGTTGAGATTCTTCTTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATAGAAGGAAAATTCAGCAAGGAAGTTGAGATTCTTCTTTAAAG  150

seq1  GGAAATATTGGAAATGAAAACACAGTGAATTAAAGAATGTAGAGGAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATTGGAAATGAAAACACAGTGAATTAAAGAATGTAGAGGAAAAC  200

seq1  TGTTACCCACTGACTCAACCAAGTGAAAGAAACCATATAATTTATGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCCACTGACTCAACCAAGTGAAAGAAACCATATAATTTATGGAGG  250

seq1  ACAGAGTATGCACTGACATACCAATAAGGAGGCTGGGGAGGTAGATGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTATGCACTGACATACCAATAAGGAGGCTGGGGAGGTAGATGGCT  300

seq1  CAGTGCTTAAGAGTGCTTACTGCTCTTGCAGAGAACTAGAGTTCAGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTAAGAGTGCTTACTGCTCTTGCAGAGAACTAGAGTTCAGTTCC  350

seq1  CAGCACCTGTGTAGGGCAGCTCACAACCACACTTGTAACTATCTGCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTGTGTAGGGCAGCTCACAACCACACTTGTAACTATCTGCAGAG  400

seq1  GCACCAACTCCCTCTTCTGACTTCCATGGACCACCACACACGGAGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAACTCCCTCTTCTGACTTCCATGGACCACCACACACGGAGAGAGA  450

seq1  CTTACACCTACATAAGTAAAAATAAACTTTTCTATAGTCAAATAAATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACCTACATAAGTAAAAATAAACTTTTCTATAGTCAAATAAATGTC  500

seq1  AATACGGACAAATAGACAAATCAGCATGAGCACAATGCCCAAGACCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGGACAAATAGACAAATCAGCATGAGCACAATGCCCAAGACCTCTA  550

seq1  AGATGGGATCATGAGAACAAACCTGAGAATCCATATGATAGAAGGAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGATCATGAGAACAAACCTGAGAATCCATATGATAGAAGGAGCCA  600

seq1  AACACTTTACTGCTTGGGAATTCACAAACCATTCAGTGAAATTACAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTACTGCTTGGGAATTCACAAACCATTCAGTGAAATTACAGCAA  650

seq1  AGCCATTCCAAACTTTGGATGGGGTATGCATTCTAAAACCAGAGGCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCCAAACTTTGGATGGGGTATGCATTCTAAAACCAGAGGCATAT  700

seq1  AAAACCCCAATAGAACTACATCCCCAAGACATTATATAGTCAACTTGCCC  750
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAACCCCAATAGAACTACATCCCC-AGACATTATATAGTCAACTTGCCC  749

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAAAAAGCCAAT  800
              ||||||| |||||| ||||| |||||||||| |||||||| |
seq2  --------AAAAAAACAAAAAACAAAAAGAAAAAAAAGC-AAAAGCCATT  790

seq1  ATTAGTAAGAGAAGCACACCAACTCACAAAGGCAGAAACATAAGAATAAC  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAAGAG-AGCACACCAACTCACAAAGGCAGAAACATAAGAATAAC  839

seq1  ATCGGCTCCAAGGTCAGTAAAACTCAAAGCTAGCAACTTTCTAACTTTCT  900
      |||||||||||||||||| |||||| |||||||| |||||||||||||||
seq2  ATCGGCTCCAAGGTCAGT-AAACTC-AAGCTAGC-ACTTTCTAACTTTCT  886

seq1  AAGCATGGACTGATATATACTTCAACCCCCGAAAGTAAGTAACAGTCAAC  950
      ||||||||||||||||||||||| |||||||||||| |||||||||||  
seq2  AAGCATGGACTGATATATACTTC-ACCCCCGAAAGT-AGTAACAGTCA--  932

seq1  CAGGCATGCCATGTACAGGAAAATTATCTTTTAGAATTGGTTGAAGACAT  1000
      || ||||| |||||||||| |||||||| ||||||  ||  |||||||  
seq2  CA-GCATG-CATGTACAGG-AAATTATC-TTTAGA--TG--TGAAGAC--  972

seq1  AAGGCTTCTTCAAAAAAATAAAAATAAAAAGAGTTCACAGGCACCACTAC  1050
      ||||| |||||  ||||||||||||||||| ||||||   || |||||||
seq2  AAGGC-TCTTC--AAAAATAAAAATAAAAA-AGTTCA---GC-CCACTAC  1014

seq1  AGAAGAGTTAAAGGAATACATATTGAGAGAATAAATACAGTCTCGATC  1098
       |||||||   | |||||||| |||||| |||||||||   |||||||
seq2  -GAAGAGT---AAGAATACAT-TTGAGA-AATAAATAC--GCTCGATC  1054