BAC Information

Click to search

BAC

Clone NameB6Ng01-050D20
Chromosome4 (Build37)
Map Location 93,723,812 - 93,724,949
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050D20.bB6Ng01-050D20.g
ACCDH874246DH874247
length1,1411,107
definitionDH874246|Mus musculus domesticus DNA, BAC clone: B6Ng01-050D20, 5' end.DH874247|Mus musculus domesticus DNA, BAC clone: B6Ng01-050D20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccatcttttaatggggttatttgata
ttctggagtccaccctcttgaattctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccattctgttggcggtct
ttttgtcttattgacggtgtcttttgccttgcagaagaattgcagtttca
tgaggtcccatttgtcaatcctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacacacatcttcgaggcttttccccag
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagagaggaatgggtcgattcac
attcttctacatgataacaaccagtagtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagtttttataacacttgc
tctttagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcagattgctctttctaattcattgaagatttgtgttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaattttttttcttcaggacttgaagtttttttcata
cagatctttcatttccttagttagagtcacgccagatattttatattatt
tgtgactatgagaggtgttgtttccctgatttctctctcagcctgtttat
cttgtgtaggaaggccattgactttgttgagttatttttatcagctactc
atcggagcttgttatagggtagtggtctctcgttgattttaagtcacatt
atatacatatcaaccactcggcataggagtattggaactct
gaattctcagccaatttaaagaaaaaaccaaaaaagaagaaatttaggaa
ctgatagatactcatcaagtcttctcattttctgaacaactgtaggaact
atgaagcacacaaaataagcctttatcatctaaagcacacatgttttgag
ttatttatgacagagaaggactgtgggagcattgctttctctgatataac
tgaccagaaagaaaaagaaaaatatagtcacatcatttaaggggcagttt
acatagacaaaaatccttatgaaatacctctgtacttgggctgtaatatc
ataattttaaaagttttagccagggactggtaaaatatctctattatctt
ataatggcactatgacaaacattagaatttgtcatcctaggacatgcttc
cttttgaggcatagttgtgtctcttctctctctttttccattcttattgt
gtatgaagaaagtacattctgtttatcacagtagaaaggaaaatatacaa
tgtccagaggcataccatcagttacccactctctctctgaacctcctttc
agtcctggagcaatatacaacctatagaggtgtatccttcactacacttt
ctaactaaagcctctcagtagtccattccagagagtcaccagctggggac
caagccttcaacacgtgaaccatttgtcagaggacacgtttgtttgttaa
aaaaaaaattaaaagatgctaattcttgcttttctttttatgcatttctt
ttttgactgttcttttttgtttgtttgttttggagacatcttaaaccatt
gctcactgataagatttatatattctctttcacattttaaatatagcaag
tgcatatattttatcctgcatctcataattcagaatctgagtttattttt
atttatttatttacttttctatcattttacatctactcactgtctctcca
gtcaccccttcacaacccttcccatcccttcttccctctcttctagtgat
ggggcctccctgggatcccctacctggcacttcagtctttggagctaggt
gctttctcttccagtgatgcagacaggcagccagcaaaaaaaaatatcct
catgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93723812_93724949
seq2: B6Ng01-050D20.g_64_1170 (reverse)

seq1  CTGCATGAGGGATATGTTCTTCTTGCTGGGCTGCCTTGTCTGGCATCACT  50
      |||||||| |||||| || || ||||| ||||||| ||||| ||||||||
seq2  CTGCATGA-GGATAT-TTTTTTTTGCT-GGCTGCC-TGTCT-GCATCACT  45

seq1  GGGAGAGAAAGCACCTAGCCTCCCAAAGACTTGAAGTGCCAGGGTAGGGG  100
      || ||||||||||||||||   |||||||| |||||||||| ||||||||
seq2  GGAAGAGAAAGCACCTAGC--TCCAAAGAC-TGAAGTGCCA-GGTAGGGG  91

seq1  GATTCCCAGGGAGGCCCCCATCCACTTAGAGGAGAAGGGGAGAAGGGATG  150
         ||||||||||| |||||| ||| |||| ||| |||| ||||||||| 
seq2  --ATCCCAGGGAGG-CCCCAT-CAC-TAGAAGAG-AGGGAAGAAGGGAT-  134

seq1  GGGAAGGGTTGTGGAAGGGGGTGACTGGGAGAGGACAGTGAGTAGGATGT  200
      |||||||||||||  | ||||||||| ||||| ||||||||||| |||||
seq2  GGGAAGGGTTGTG--AAGGGGTGACT-GGAGA-GACAGTGAGTA-GATGT  179

seq1  AAAATGAATAAGAAAAAGTTAAATTAAATTAAATTAAAAAATAAACTCAG  250
      |||||||   ||||||   |||||  || |||||  ||||||||||||||
seq2  AAAATGA--TAGAAAA--GTAAAT--AAATAAAT--AAAAATAAACTCAG  221

seq1  ATTCTGAATTTATGAGATGCAGGATAAAATATATGCACTTGCTATATTTA  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAA-TTATGAGATGCAGGATAAAATATATGCACTTGCTATATTTA  270

seq1  AAATGTGAAAGAGAATATATAAATCTTATCAGTGAGCAATGGTTTAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGAAAGAGAATATATAAATCTTATCAGTGAGCAATGGTTTAAGAT  320

seq1  GTCTCCAAAACAAACAAACAAAAAAGAACAGTCAAAAAAGAAATGCATAA  400
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTCTCCAAAACAAACAAACAAAAAAGAACAGTCAAAAAAGAAATGCAT-A  369

seq1  AAAAGAAAAGCAAGAATTAGCATCTTTTAATTTTTTTTTTAACAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAGCAAGAATTAGCATCTTTTAATTTTTTTTTTAACAAACAAA  419

seq1  CGTGTCCTCTGACAAATGGTTCACGTGTTGAAGGCTTGGTCCCCAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCTCTGACAAATGGTTCACGTGTTGAAGGCTTGGTCCCCAGCTGG  469

seq1  TGACTCTCTGGAATGGACTACTGAGAGGCTTTAGTTAGAAAGTGTAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTCTGGAATGGACTACTGAGAGGCTTTAGTTAGAAAGTGTAGTGA  519

seq1  AGGATACACCTCTATAGGTTGTATATTGCTCCAGGACTGAAAGGAGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACACCTCTATAGGTTGTATATTGCTCCAGGACTGAAAGGAGGTTC  569

seq1  AGAGAGAGAGTGGGTAACTGATGGTATGCCTCTGGACATTGTATATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGTGGGTAACTGATGGTATGCCTCTGGACATTGTATATTTTC  619

seq1  CTTTCTACTGTGATAAACAGAATGTACTTTCTTCATACACAATAAGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACTGTGATAAACAGAATGTACTTTCTTCATACACAATAAGAATG  669

seq1  GAAAAAGAGAGAGAAGAGACACAACTATGCCTCAAAAGGAAGCATGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAGAGAGAAGAGACACAACTATGCCTCAAAAGGAAGCATGTCCT  719

seq1  AGGATGACAAATTCTAATGTTTGTCATAGTGCCATTATAAGATAATAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACAAATTCTAATGTTTGTCATAGTGCCATTATAAGATAATAGAG  769

seq1  ATATTTTACCAGTCCCTGGCTAAAACTTTTAAAATTATGATATTACAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTACCAGTCCCTGGCTAAAACTTTTAAAATTATGATATTACAGCC  819

seq1  CAAGTACAGAGGTATTTCATAAGGATTTTTGTCTATGTAAACTGCCCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACAGAGGTATTTCATAAGGATTTTTGTCTATGTAAACTGCCCCTT  869

seq1  AAATGATGTGACTATATTTTTCTTTTTCTTTCTGGTCAGTTATATCAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGTGACTATATTTTTCTTTTTCTTTCTGGTCAGTTATATCAGAG  919

seq1  AAAGCAATGCTCCCACAGTCCTTCTCTGTCATAAATAACTCAAAACATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATGCTCCCACAGTCCTTCTCTGTCATAAATAACTCAAAACATGT  969

seq1  GTGCTTTAGATGATAAAGGCTTATTTTGTGTGCTTCATAGTTCCTACAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTAGATGATAAAGGCTTATTTTGTGTGCTTCATAGTTCCTACAGT  1019

seq1  TGTTCAGAAAATGAGAAGACTTGATGAGTATCTATCAGTTCCTAAATTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAAAATGAGAAGACTTGATGAGTATCTATCAGTTCCTAAATTTC  1069

seq1  TTCTTTTTTGGTTTTTTCTTTAAATTGGCTGAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTGGTTTTTTCTTTAAATTGGCTGAGAATTC  1107