BAC Information

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BAC

Clone NameB6Ng01-050I04
Chromosome4 (Build37)
Map Location 134,631,076 - 134,632,006
singlet/doubletsinglet
Overlap genenone
Upstream geneAim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2
Downstream geneRunx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050I04.bB6Ng01-050I04.g
ACCDH874432DH874433
length1,243923
definitionDH874432|Mus musculus domesticus DNA, BAC clone: B6Ng01-050I04, 5' end.DH874433|Mus musculus domesticus DNA, BAC clone: B6Ng01-050I04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgggaagtatatactataccaatgaagccacatctccagccc
ctgattagcctgtgcattaattagtggctgggaatgtgactcagtggtag
agagcacttacttgtctgccatgcccttggtcctggcttagacgtcaatt
agttagtagcatttatttattaattaaaatgtcattcaacaattaccact
aattgtataatatgttcattgctccccagggatatttgaaccttcaaaaa
tacatcccattccccaggtgttagtcaccactggtctttccttctttgat
cttgcctgttctggacaatggtcgcactgtggaatggcactgtgtgtgtg
atcttatcattcacttagagtacacttttaaggttcattgttattagacg
cgttctcacgaccggccaggaaagacgcaacaaaccagaatcttctgcgg
caaaactttattgcttacatcttcaggagcaagagtgtaagaagcaagag
agagagagaacgaaaccccgtccctattaaggagaattctccttcgccta
ggacgtgtcactccctgattggctgcagcccatcggccgagttgacgtca
cggggaaggcagagcacaccctcggcacatgcgcagattatttgtttacc
acttagaacacagctgtcagcgccatcttgtaacggcgaatgtgggcgcg
gctcccaacatctccccctttccttttaataagagcaaataggccaccca
tattaatgagagtggagatagaggtcaaatccccagtgtgtaggtaaagg
agccatgtacaggattagctcttacgctcacaggcttttacccagagcaa
ccctgacctgctcccgtgtcgttttgcctgggggaagggaactaggacac
tgaaccttcatgaaagatgacatgtctccctagaatagctcatatatgcc
gcagagcctttccattgcagtgctagcgtgcaactctcttcggctgctga
gcacactcactcttatcccgtgcatgagtctagcctcgtgagatgtaaga
gctgagtgcagcgacctttgcctagcctagatacctattcagggagctac
agtctagtccgcaagcgcctggccaataaaccactgttcttcctagttgg
ctagcttcagacatcagaggcacctatccaccaaagtttcgaaatatata
ttccctatctaaaggaagtcgagatcatggaatcttgtcgacg
gaattctccgggagcagaactgggtccaggtcctgggagacatgcaagga
cagtttgaggattaaaacagtgtgtttggttgtaggccagggctggactg
tcttccacctgcctggggtacttccagcaaacggaatccagtctgtctcc
ttccttctcactatggctagtgaggaggtgaggttcaaccaaagacacca
gactggctgtccagttccagaccccagtctgcatcaccttacgctgcccc
ggcaccccggcccaggctggtgaggtcaagtgcggggagctggagaggaa
tggaggccagaggagtcaggattaggacagggagctaaggggtgtgccag
cactcagggactgttgacaggggtgtacccacatgcttcctaaagacagc
tccatggacagataaactgaaacaggaacaagatagcaagaatggccttc
ctaccctccctcccttaaagcccagcacacaccatggagcctggagcctg
accacaaagaggtgcagggcaggtctacctgccagctctgctgcccctga
gaccctgcttgacgaacgtgctgatctgagaggaagctgaccctctggca
gagaggtcttctggataggcagcgacttctccccaccatgcaaagggcca
ctgggggtatatgtcaaacaagaattctacccagcagcccccagagacac
agctacctgaggtctcagagaaaaggacacaggaagtgaggtgacagggg
acctgtgcgctgtgtggtcctgggatgtggcctgcctattgtgggccata
taccttcagatgttcctccaacccacagccctgaatgctggtgacaccca
ggccaggatgaagacgcagtccatggtgggtagaggaacactggaagcag
ggagagctgagtggggtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134631076_134632006
seq2: B6Ng01-050I04.g_65_986

seq1  GAATTCTCCGGGAGCAGAACTGGGTCCAGGTCCTGGGAGACATGCAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGGGAGCAGAACTGGGTCCAGGTCCTGGGAGACATGCAAGGA  50

seq1  CAGTTTGAGGATTAAAACAGTGTGTTTGGTTGTAGGCCAGGGCTGGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGAGGATTAAAACAGTGTGTTTGGTTGTAGGCCAGGGCTGGACTG  100

seq1  TCTTCCACCTGCCTGGGGTACTTCCAGCAAACGGAATCCAGTCTGTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACCTGCCTGGGGTACTTCCAGCAAACGGAATCCAGTCTGTCTCC  150

seq1  TTCCTTCTCACTATGGCTAGTGAGGAGGTGAGGTTCAACCAAAGACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCACTATGGCTAGTGAGGAGGTGAGGTTCAACCAAAGACACCA  200

seq1  GACTGGCTGTCCAGTTCCAGACCCCAGTCTGCATCACCTTACGCTGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTGTCCAGTTCCAGACCCCAGTCTGCATCACCTTACGCTGCCCC  250

seq1  GGCACCCCGGCCCAGGCTGGTGAGGTCAAGTGCGGGGAGCTGGAGAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCCGGCCCAGGCTGGTGAGGTCAAGTGCGGGGAGCTGGAGAGGAA  300

seq1  TGGAGGCCAGAGGAGTCAGGATTAGGACAGGGAGCTAAGGGGTGTGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCAGAGGAGTCAGGATTAGGACAGGGAGCTAAGGGGTGTGCCAG  350

seq1  CACTCAGGGACTGTTGACAGGGGTGTACCCACATGCTTCCTAAAGACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGGACTGTTGACAGGGGTGTACCCACATGCTTCCTAAAGACAGC  400

seq1  TCCATGGACAGATAAACTGAAACAGGAACAAGATAGCAAGAATGGCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGACAGATAAACTGAAACAGGAACAAGATAGCAAGAATGGCCTTC  450

seq1  CTACCCTCCCTCCCTTAAAGCCCAGCACACACCATGGAGCCTGGAGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTCCCTCCCTTAAAGCCCAGCACACACCATGGAGCCTGGAGCCTG  500

seq1  ACCACAAAGAGGTGCAGGGCAGGTCTACCTGCCAGCTCTGCTGCCCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAAGAGGTGCAGGGCAGGTCTACCTGCCAGCTCTGCTGCCCCTGA  550

seq1  GACCCTGCTTGACGAACGTGCTGATCTGAGAGGAAGCTGACCCTCTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGCTTGACGAACGTGCTGATCTGAGAGGAAGCTGACCCTCTGGCA  600

seq1  GAGAGGTCTTCTGGATAGGCAGCGACTTCTCCCCACCATGCAAAGGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTCTTCTGGATAGGCAGCGACTTCTCCCCACCATGCAAAGGGCCA  650

seq1  CTGGGGGTATATGTCAAACAAGAATTCTACCCAGCAGCCCCCAGAGACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTATATGTCAAACAAGAATTCTACCCAGCAGCCCCCAGAGACAC  700

seq1  AGCTACCTGAGGTCTCAGAGAAAAGGACACAGGAAGTGAGGTGACAGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCTGAGGTCTCAGAGAAAAGGACACAGGAAGTGAGGTGACAGGGG  750

seq1  ACCTGTGCGCTGTGTGGTCCTGGGATGTGGCCTGCCTATTGTGGGCCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGCGCTGTGTGGTCCTGGGATGTGGCCTGCCTATTGTGGGCCATA  800

seq1  TACCTTCAGATGTTCCTCCAACCCACAGCCCTGAATGCTGGTGACACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCAGATGTTCCTCCAACCCACAGCCCTGAATGCTGGTGACACCCA  850

seq1  GGGCCAGGATGAAGGACGGCAGTCCATGGGTGGGTAGAGGAACACTGGAA  900
       |||||||||||| ||| ||||||||| ||||||||||||||||||||||
seq2  -GGCCAGGATGAA-GAC-GCAGTCCAT-GGTGGGTAGAGGAACACTGGAA  896

seq1  GCAGGGGAGGAAGCTGAGGTGGGGGTGTGTG  931
      ||| |||||  |||||||   ||||||||||
seq2  GCA-GGGAG--AGCTGAG--TGGGGTGTGTG  922