BAC Information

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BAC

Clone NameB6Ng01-050K20
Chromosome4 (Build37)
Map Location 24,174,127 - 24,308,440
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC625462, LOC383998, LOC100040464, LOC623873, LOC664973
Downstream geneF730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050K20.bB6Ng01-050K20.g
ACCDH874551DH874552
length1,049992
definitionDH874551|Mus musculus domesticus DNA, BAC clone: B6Ng01-050K20, 5' end.DH874552|Mus musculus domesticus DNA, BAC clone: B6Ng01-050K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,174,127 - 24,175,209)(24,307,425 - 24,308,440)
sequence
gaattcaggtcacatacttgagcaacaaacactttagagctcttgttcca
actctctaatctagcagtgtttaacctcaatgaaagactgtctaataata
acaagacatattgattatgtgtccaagaaggagatatttagatataaaat
gctgaatcttattgtccagaaaagaatgtgctgggagatttttagggtca
agtttattagaaactatttatgatatctcctatttcattcaataaatttt
gggttctaatgtgtatctaaaaacaagtctctaaattaataaataatgca
ggtataatttcattttattaaaaatagttttttttcacttaatgtgttct
gattatggctttccctcgctactcctcccagttccttcccacctcccctc
ccatccagattcactccctttctttctctcattagaaatgaacaggcctc
taagagataaaaatataatataatataatatattataatataatatatta
tattataatatggtaaaacaaaactatcacactgaaattgtacacggcaa
atcaacagtgggaaaagagcccaggaacaggtacaagaaacacatagata
caaagacacagtcattcacacactcagggatccaataaaagcactaaatt
ggaaaggtataatttatacccaaaggacctgtaggataaaaatgagagaa
atatatatatatatatataaaatttaaattttaaataatcaaaaaagtat
aaaagcgatagaaggacattatgacacaagaaaacctttttaaagaagtg
ctttgttgtaccttagtgtgcgacaggcatatggcacagttctttgtgaa
atagtgtttatcacagaaatgcatcagtgagatgtatgaaaagctgtgtc
tataggacatggacactgcatacatttgtatcttgtatgagcatgaatga
cacagcatagtcatctgtgctttagtttaagagcttaaatcatttcgaat
agaaaaaaagatcaattcttgctatgaaaagaatgctcaaggagctgct
gaattctttattgattgaaaagttatttgctcagtcttacttttattatt
attgttatcattattagttaataataaataattacttaatactaatacaa
ttatttaacatttattgaatctgtatatatttcatggtaagaaatagaaa
aaaaaagtgctttaacccaaattgctaaggattttattatctttggtttg
cacttgtcatatttctaatatttttgactcttaatttctcagctttctga
gttcagatcatatcccacattctaaacactctgctcttctcttgctgctt
ggtatttaatgctaatggctactgaccagaagtcctgtcattattttaat
gaccccattcccacatcagaaactttctctccttctgaagccacaggtgg
aatacagatgctaacatcttcatacaaagatttcaaagtggtagctcctg
cttttggtggttcccaagctcctagctttggggatacaaataggtgccag
aagggtgttgccttaagttcctctgacactctacttctactgtctttgaa
accctcagtcttcgtatgacttcatttctttctgacaatacacaattttc
tttctgcatcttaattttctttttaaaaaaatttatttaaatttatttat
ttaattaattatacactccatattttattcccccctccacatccctccct
cctactgctccacatcccacacctcttccccaaacccctgtctccacatg
gatgtccccacccttcaccccacctgaccgctaaactccctggggcctcc
agtctctgagggttagacgcatcatctctgatgacacagacactgcagtc
tctgctgatgtgtgtgaggctcatatcactgtgtatgctgctgttagtgt
cagtgtttgagagatctcagggtcagataattgatactgctgctcctcta
cagggtgcctctcctcagctcttcagtctcgttcttatgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_24174127_24175209
seq2: B6Ng01-050K20.b_44_1092

seq1  GAATTCAGGTCACATACTTGAGCAACAAACACTTTAGAGCTCTTGTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCACATACTTGAGCAACAAACACTTTAGAGCTCTTGTTCCA  50

seq1  ACTCTCTAATCTAGCAGTGTTTAACCTCAATGAAAGACTGTCTAATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTAATCTAGCAGTGTTTAACCTCAATGAAAGACTGTCTAATAATA  100

seq1  ACAAGACATATTGATTATGTGTCCAAGAAGGAGATATTTAGATATAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACATATTGATTATGTGTCCAAGAAGGAGATATTTAGATATAAAAT  150

seq1  GCTGAATCTTATTGTCCAGAAAAGAATGTGCTGGGAGATTTTTAGGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATCTTATTGTCCAGAAAAGAATGTGCTGGGAGATTTTTAGGGTCA  200

seq1  AGTTTATTAGAAACTATTTATGATATCTCCTATTTCATTCAATAAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTAGAAACTATTTATGATATCTCCTATTTCATTCAATAAATTTT  250

seq1  GGGTTCTAATGTGTATCTAAAAACAAGTCTCTAAATTAATAAATAATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTAATGTGTATCTAAAAACAAGTCTCTAAATTAATAAATAATGCA  300

seq1  GGTATAATTTCATTTTATTAAAAATAGTTTTTTTTCACTTAATGTGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAATTTCATTTTATTAAAAATAGTTTTTTTTCACTTAATGTGTTCT  350

seq1  GATTATGGCTTTCCCTCGCTACTCCTCCCAGTTCCTTCCCACCTCCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGGCTTTCCCTCGCTACTCCTCCCAGTTCCTTCCCACCTCCCCTC  400

seq1  CCATCCAGATTCACTCCCTTTCTTTCTCTCATTAGAAATGAACAGGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAGATTCACTCCCTTTCTTTCTCTCATTAGAAATGAACAGGCCTC  450

seq1  TAAGAGATAAAAATATAATATAATATAATATATTATAATATAATATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATAAAAATATAATATAATATAATATATTATAATATAATATATTA  500

seq1  TATTATAATATGGTAAAACAAAACTATCACACTGAAATTGTACACGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATATGGTAAAACAAAACTATCACACTGAAATTGTACACGGCAA  550

seq1  ATCAACAGTGGGAAAAGAGCCCAGGAACAGGTACAAGAAACACATAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAGTGGGAAAAGAGCCCAGGAACAGGTACAAGAAACACATAGATA  600

seq1  CAAAGACACAGTCATTCACACACTCAGGGATCCAATAAAAGCACTAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACACAGTCATTCACACACTCAGGGATCCAATAAAAGCACTAAATT  650

seq1  GG-AAGGTATAATTTATACCCAAAGGACCTGTAGGATAAAAATGAGAGAA  699
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTATAATTTATACCCAAAGGACCTGTAGGATAAAAATGAGAGAA  700

seq1  ATATATATATATATATATAAAATTTAAATTTTAAAATAATCAAAAAAGTA  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATATATATATATATATATAAAATTTAAATTTT-AAATAATCAAAAAAGTA  749

seq1  TAAAAGCGATAGAAGGACATTATGACACAAGAAAACCTTTTTAAAGAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCGATAGAAGGACATTATGACACAAGAAAACCTTTTTAAAGAAGT  799

seq1  GCTTTGTTGTACCTTAGTGTGCGACAGGGCATATGGCACAGTTCTTTGTG  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTTTGTTGTACCTTAGTGTGCGACA-GGCATATGGCACAGTTCTTTGTG  848

seq1  AAATAGTGTTTATCCACAGAAATGCCATCAGTGGAAGATGTATGGAAAAG  899
      ||||||||||||| |||||||||| ||||||||  |||||||| ||||||
seq2  AAATAGTGTTTAT-CACAGAAATG-CATCAGTG--AGATGTAT-GAAAAG  893

seq1  CTGGTGGTCTATTAAGGGACCATGGGACAACTGCATACATTTGGTAATCT  949
      |||   ||||||  |||   ||| |||| ||||||||||||| |||   |
seq2  CTG--TGTCTAT--AGG--ACAT-GGAC-ACTGCATACATTT-GTATCTT  934

seq1  GTATGAAGCCATGGAAATGACACAGCAATAGCCCATCTGTGGCTTTAGTA  999
      ||||||   ||||  ||||||||||| ||||  ||||||| |||||||| 
seq2  GTATGA--GCATG--AATGACACAGC-ATAG-TCATCTGT-GCTTTAGTT  977

seq1  TATAGAGCTTAAAATACAATTTCAGAATAGGAAAAAAAAGATCAAATTCT  1049
      || |||||||||   |  ||||| ||||||  ||||||||||| ||||||
seq2  TA-AGAGCTTAA---ATCATTTC-GAATAG--AAAAAAAGATC-AATTCT  1019

seq1  TGCTAATGAAAAAGAATGCTCAAAGTGAGCTGCT  1083
      |||| ||| ||||||||||||||   ||||||||
seq2  TGCT-ATG-AAAAGAATGCTCAA--GGAGCTGCT  1049

seq1: chr4_24307425_24308440
seq2: B6Ng01-050K20.g_69_1058 (reverse)

seq1  TCATAAGAAAACGAAGACTGAAAGAAGCTGAGGAGGAGGGCAACCCTGTA  50
      |||||||  |||| ||||||||   ||||||||| ||||   ||||||||
seq2  TCATAAG--AACG-AGACTGAA--GAGCTGAGGA-GAGG--CACCCTGTA  42

seq1  GGAGGAGCAGCAGTATCAATTAATCTGGACCCCTGAGATCTCTCAAACAC  100
       |||||||||||||||||||| |||||   ||||||||||||||||||||
seq2  -GAGGAGCAGCAGTATCAATT-ATCTG--ACCCTGAGATCTCTCAAACAC  88

seq1  TGGACCACTAAACAGGCAGCATACACCAGTTGATATGAGGCCCTCAACAC  150
      ||   |||| |||| |||||||||| ||| |||||||||  |||| ||||
seq2  TG--ACACT-AACA-GCAGCATACA-CAG-TGATATGAG--CCTC-ACAC  129

seq1  ACATTCAGCAGAGGACTGCAGTGTCTGTGTTCATTCAGAGATGATGCGTC  200
      ||| |||||||| |||||||||||||||| ||| ||||||||||||||||
seq2  ACA-TCAGCAGA-GACTGCAGTGTCTGTG-TCA-TCAGAGATGATGCGTC  175

seq1  TAACCCTCAAGAGACTGGAGGCCCCAGGGAGTTTAGCGGTCAGGTGGGGT  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTC-AGAGACTGGAGGCCCCAGGGAGTTTAGCGGTCAGGTGGGGT  224

seq1  GAAGGGTGGGGACATCCATGTGGAGACAGGGGTTTGGGGAAGAGGTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGGGGACATCCATGTGGAGACAGGGGTTTGGGGAAGAGGTGTGG  274

seq1  GATGTGGAGCAGTAGGAGGGAGGGATGTGGAGGGGGGAATAAAATATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAGCAGTAGGAGGGAGGGATGTGGAGGGGGGAATAAAATATGGA  324

seq1  GTGTATAATTAATTAAATAAATAAATTTAAATAAATTTTTTTAAAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAATTAATTAAATAAATAAATTTAAATAAATTTTTTTAAAAAGAA  374

seq1  AATTAAGATGCAGAAAGAAAATTGTGTATTGTCAGAAAGAAATGAAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGATGCAGAAAGAAAATTGTGTATTGTCAGAAAGAAATGAAGTCA  424

seq1  TACGAAGACTGAGGGTTTCAAAGACAGTAGAAGTAGAGTGTCAGAGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAAGACTGAGGGTTTCAAAGACAGTAGAAGTAGAGTGTCAGAGGAAC  474

seq1  TTAAGGCAACACCCTTCTGGCACCTATTTGTATCCCCAAAGCTAGGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCAACACCCTTCTGGCACCTATTTGTATCCCCAAAGCTAGGAGCT  524

seq1  TGGGAACCACCAAAAGCAGGAGCTACCACTTTGAAATCTTTGTATGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACCACCAAAAGCAGGAGCTACCACTTTGAAATCTTTGTATGAAGA  574

seq1  TGTTAGCATCTGTATTCCACCTGTGGCTTCAGAAGGAGAGAAAGTTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCATCTGTATTCCACCTGTGGCTTCAGAAGGAGAGAAAGTTTCTG  624

seq1  ATGTGGGAATGGGGTCATTAAAATAATGACAGGACTTCTGGTCAGTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAATGGGGTCATTAAAATAATGACAGGACTTCTGGTCAGTAGCC  674

seq1  ATTAGCATTAAATACCAAGCAGCAAGAGAAGAGCAGAGTGTTTAGAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATTAAATACCAAGCAGCAAGAGAAGAGCAGAGTGTTTAGAATGT  724

seq1  GGGATATGATCTGAACTCAGAAAGCTGAGAAATTAAGAGTCAAAAATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATGATCTGAACTCAGAAAGCTGAGAAATTAAGAGTCAAAAATATT  774

seq1  AGAAATATGACAAGTGCAAACCAAAGATAATAAAATCCTTAGCAATTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATGACAAGTGCAAACCAAAGATAATAAAATCCTTAGCAATTTGG  824

seq1  GTTAAAGCACTTTTTTTTTCTATTTCTTACCATGAAATATATACAGATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGCACTTTTTTTTTCTATTTCTTACCATGAAATATATACAGATTC  874

seq1  AATAAATGTTAAATAATTGTATTAGTATTAAGTAATTATTTATTATTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGTTAAATAATTGTATTAGTATTAAGTAATTATTTATTATTAAC  924

seq1  TAATAATGATAACAATAATAATAAAAGTAAGACTGAGCAAATAACTTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGATAACAATAATAATAAAAGTAAGACTGAGCAAATAACTTTTC  974

seq1  AATCAATAAAGAATTC  1016
      ||||||||||||||||
seq2  AATCAATAAAGAATTC  990