BAC Information

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BAC

Clone NameB6Ng01-051C02
Chromosome4 (Build37)
Map Location 8,189,156 - 8,293,302
singlet/doubletdoublet
Overlap genenone
Upstream geneCar8, LOC100039494
Downstream geneLOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051C02.bB6Ng01-051C02.g
ACCDH874864DH874865
length1,189324
definitionDH874864|Mus musculus domesticus DNA, BAC clone: B6Ng01-051C02, 5' end.DH874865|Mus musculus domesticus DNA, BAC clone: B6Ng01-051C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,189,156 - 8,190,355)(8,292,979 - 8,293,302)
sequence
gaattcattaaaattgaccctagacttcaaatacatgaaacttagcatca
attttttttaatccaagatttttctgtgttgtgcttcctcagagaaattc
cccattcctaggcaagtttacagaagaaaggacagcaggggacaatagaa
gattcaacatcattgagtgcctaggtatctgcctgtgaaaaagaaactaa
ttaaatatgcctcgtctatattaactgagtcatcttgatggccctacctt
actttttgagacaagctctctcactgaaccaagtgctaacccagtaacca
gtgatctctgggcatcaacatgtctcagcttacatgacctctgccaacat
tagtgttacagacctgcatcacttcctgcagttttttttttgtgtgtgaa
tagtggagatctaaactcaggtcttcatgctttcatggaaatcttccctc
tcccaaggtcccagatcctttccttttaacggcgatgttcagaggtcatg
aggtactcaaacttgatggatatccaatagctgaacaagttttaagtgtg
tttttatatgctgggctcatttcccagtttacacgttgcttttctggtag
aaatgcatactctaggattttggcaaagttctttctcttctcatctatgc
tggtggtttccatttccattctgatatgttcccgttaagagctctacatt
aggtcgttatagctgcagttaccccaggtatccataacccaatgaaaaca
ccaagcatttcagtaatgactattttgccatctgtttttttctagcagac
ttgtgctttattaacacatttaacaacatctacagtacagaatcatgccc
tgcaatgaagaaaattgtaaggtagattatctcttaaagtcatcacaact
gaaaaaattcatgtatgttatttctgtctggaaaaattctagtttgtgat
ccagaacaaatggatgaaattaatttagacaatcagtattgggaaagaaa
ttttaggatgatataaatactatactaaatgatcacctgtattagctagg
gttctctagaatacaaaacttatagaataaatatccctcttgtttattag
aggactattagaatgaaatcagggggggtgtcagctatcaattatgtttc
gctatgaaacggaagattcattagctgctcgatctatgt

agcttggtggacacttcattacaacctagtaaataagtgacttttttaaa
aaatataaatttgtagcttgatgaggatagacacagaagaagagatgtga
cggttggtatctttgtagggcctactttgttctgtaggaaagttcacaag
atgggcttaatgagtcttaggaagcagactccggtaagtaggaaatcttc
tgaggagcaacagagtatgaccctttaacaggcctggttagcattttggt
tcaattcagttagaggttcttgtgtgtgtgtgcgcgcgcgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8189156_8190355
seq2: B6Ng01-051C02.b_43_1231

seq1  GAATTCATTAAAATTGACCCTAGACTTCAAATACATGAAACTTAGCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAATTGACCCTAGACTTCAAATACATGAAACTTAGCATCA  50

seq1  ATTTTTTTTAATCCAAGATTTTTCTGTGTTGTGCTTCCTCAGAGAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAATCCAAGATTTTTCTGTGTTGTGCTTCCTCAGAGAAATTC  100

seq1  CCCATTCCTAGGCAAGTTTACAGAAGAAAGGACAGCAGGGGACAATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCTAGGCAAGTTTACAGAAGAAAGGACAGCAGGGGACAATAGAA  150

seq1  GATTCAACATCATTGAGTGCCTAGGTATCTGCCTGTGAAAAAGAAACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAACATCATTGAGTGCCTAGGTATCTGCCTGTGAAAAAGAAACTAA  200

seq1  TTAAATATGCCTCGTCTATATTAACTGAGTCATCTTGATGGCCCTACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGCCTCGTCTATATTAACTGAGTCATCTTGATGGCCCTACCTT  250

seq1  ACTTTTTGAGACAAGCTCTCTCACTGAACCAAGTGCTAACCCAGTAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGAGACAAGCTCTCTCACTGAACCAAGTGCTAACCCAGTAACCA  300

seq1  GTGATCTCTGGGCATCAACATGTCTCAGCTTACATGACCTCTGCCAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTCTGGGCATCAACATGTCTCAGCTTACATGACCTCTGCCAACAT  350

seq1  TAGTGTTACAGACCTGCATCACTTCCTGCAGTTTTTTTTTTGTGTGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTACAGACCTGCATCACTTCCTGCAGTTTTTTTTTTGTGTGTGAA  400

seq1  TAGTGGAGATCTAAACTCAGGTCTTCATGCTTTCATGGAAATCTTCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGATCTAAACTCAGGTCTTCATGCTTTCATGGAAATCTTCCCTC  450

seq1  TCCCAAGGTCCCAGATCCTTTCCTTTTAACGGCGATGTTCAGAGGTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGTCCCAGATCCTTTCCTTTTAACGGCGATGTTCAGAGGTCATG  500

seq1  AGGTACTCAAACTTGATGGATATCCAATAGCTGAACAAGTTTTAAGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTCAAACTTGATGGATATCCAATAGCTGAACAAGTTTTAAGTGTG  550

seq1  TTTTTATATGCTGGGCTCATTTCCCAGTTTACACGTTGCTTTTCTGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATGCTGGGCTCATTTCCCAGTTTACACGTTGCTTTTCTGGTAG  600

seq1  AAATGCATACTCTAGGATTTTGGCAAAGTTCTTTCTCTTCTCATCTATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATACTCTAGGATTTTGGCAAAGTTCTTTCTCTTCTCATCTATGC  650

seq1  TGGTGGTTTCCATTTCCATTCTGATATGTTCCCGTTAAGAGCTCTACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTTCCATTTCCATTCTGATATGTTCCCGTTAAGAGCTCTACATT  700

seq1  AGGTCGTTATAGCTGCAGTTACCCCAGGTATCCATAACCCAATGAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGTTATAGCTGCAGTTACCCCAGGTATCCATAACCCAATGAAAACA  750

seq1  CCAAGCATTTCAGTAATGACTATTTTGCCATCTGTTTTTTTCTAGCAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATTTCAGTAATGACTATTTTGCCATCTGTTTTTTTCTAGCAGAC  800

seq1  TTGTGCTTTATTAACACATTTAACAACATCTACAGTACAGAATCATGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTTATTAACACATTTAACAACATCTACAGTACAGAATCATGCCC  850

seq1  TGCAATGAAGAAAATTGTAAGGTAGATTATCTCTTAAAGTCATCACAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGAAGAAAATTGTAAGGTAGATTATCTCTTAAAGTCATCACAACT  900

seq1  GAAAAAATTCATGTATGTTATTTCTGTCTGGAAAAAATTCTAGTTTTGTG  950
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  GAAAAAATTCATGTATGTTATTTCTGTCTGG-AAAAATTCTAG-TTTGTG  948

seq1  ATCCAGAAACAAAATGGATGAAATTAATTTAGACAAATCAGTATTGGGAA  1000
      ||||||||   ||||||||||||||||||||||| |||||||||||||||
seq2  ATCCAGAA--CAAATGGATGAAATTAATTTAGAC-AATCAGTATTGGGAA  995

seq1  AGAAATTTTAGGATGATATAAATACTATACTAAATGATCA-CTGTATTAG  1049
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAAATTTTAGGATGATATAAATACTATACTAAATGATCACCTGTATTAG  1045

seq1  CTAGGGTTCTCTAGAATAACAAAACTTATAGAATAAATATCCCTC-TGTT  1098
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  CTAGGGTTCTCTAGAAT-ACAAAACTTATAGAATAAATATCCCTCTTGTT  1094

seq1  TATTTAGAAGGACTTATTAGAATGAATTACAGGGTGTGGTCCAGCTAATC  1148
      || |||| ||||| |||||||||||| | ||||| | |   ||||||   
seq2  TA-TTAG-AGGAC-TATTAGAATGAAAT-CAGGGGGGGTGTCAGCTA--T  1138

seq1  CAATAATGTTCTGCCTATG-AACAGAAGAATTCATTAGCTGCTCAGTCTA  1197
      |||| ||||| |  ||||| ||| |||| |||||||||||||||  ||||
seq2  CAATTATGTT-TCGCTATGAAACGGAAG-ATTCATTAGCTGCTCGATCTA  1186

seq1  TGT  1200
      |||
seq2  TGT  1189


seq1: chr4_8292979_8293302
seq2: B6Ng01-051C02.g_72_395 (reverse)

seq1  CACACACACACACACACACACACACACACACACACGCGCGCGCACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACGCGCGCGCACACACA  50

seq1  CACAAGAACCTCTAACTGAATTGAACCAAAATGCTAACCAGGCCTGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAACCTCTAACTGAATTGAACCAAAATGCTAACCAGGCCTGTTAA  100

seq1  AGGGTCATACTCTGTTGCTCCTCAGAAGATTTCCTACTTACCGGAGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCATACTCTGTTGCTCCTCAGAAGATTTCCTACTTACCGGAGTCTG  150

seq1  CTTCCTAAGACTCATTAAGCCCATCTTGTGAACTTTCCTACAGAACAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAAGACTCATTAAGCCCATCTTGTGAACTTTCCTACAGAACAAAG  200

seq1  TAGGCCCTACAAAGATACCAACCGTCACATCTCTTCTTCTGTGTCTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCTACAAAGATACCAACCGTCACATCTCTTCTTCTGTGTCTATCC  250

seq1  TCATCAAGCTACAAATTTATATTTTTTAAAAAAGTCACTTATTTACTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGCTACAAATTTATATTTTTTAAAAAAGTCACTTATTTACTAGG  300

seq1  TTGTAATGAAGTGTCCACCAAGCT  324
      ||||||||||||||||||||||||
seq2  TTGTAATGAAGTGTCCACCAAGCT  324


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