BAC Information

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BAC

Clone NameB6Ng01-052C08
Chromosome4 (Build37)
Map Location 129,859,028 - 129,986,992
singlet/doubletdoublet
Overlap geneGm853, Serinc2, Fabp3
Upstream geneS100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl
Downstream geneZcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052C08.bB6Ng01-052C08.g
ACCDH875586DH875587
length924737
definitionDH875586|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C08, 5' end.DH875587|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,859,028 - 129,859,951)(129,986,254 - 129,986,992)
sequence
gaattcattctatagcccaaggaagccttaaacttgggatcctcttgtct
cagcttcccaagtagctgtgcttataggcagctccgcatggtcccactcc
ttattcttaattctctgctactcagttggatccactttcactgaagctca
aagtccaggatcaacagctcacatccttgccaggctgagctcagagctga
tgctcttccagcgcctctttacaggagattgtggcagaggctcatggtgc
tggcactgtcccaatgcctgtttataggagcgtttccatatctcacttac
atttccgggaagtctcccttgttccagccaggaagatcaacaaacacatg
agcccagataagtgcaaggttctcccagggccgggggtgtgggtcacact
ttccctttttgtcccatatcacaaacagtaagcccccagtgttggggtga
aacccagccccatgaggaatctctttccttctctttggagaaagcaccag
cacgtggactggagggttagaagctctcaaaaggccacgtcccatcccat
tccctggcattagagaccatacctgagtggggagaaggtctttgtaaacc
gtgtgtgctggtacacacctggtaagtctagcccttgggaggtagaggca
ggagaatcaggagttcaaggccagcctggggctacttgaaaactctgtct
cagaaaagggaaaagaaatatagggagagaagggagaaacccctacattt
ttgtcaccttaaatggccaagttggttggaaatgtttagtacacccagga
agctaacaatggttcccacctgaaagatgaagagaccttaatctcgtatg
tcacttgaaatgtgccaagatcaaatccaagtacagagccgaccagcaca
cagcacctgtgctggcgaatgaat
gaattctctctgtatagaccaggcctagaactcgggagattcacctgcct
ctgcttcccagagtgctggttaaaggcgttgtgtcaccgcccacaccaca
caatttccccagccccaagccacactctcccttcatagctcttcaccttt
cttctgacaccctctgctcgatcccaggctttcttcaccctatccccagc
actgatccggtggccgactggtgcggccgggaagcctatgtgtagtggtc
gtcttgccctgctctagcagcagcgtctccgactgatcccaggggtggct
gcacacactgtaggtgaaggtcaggctggtgagaaccagggcatcttcca
gagagaggcctcttcactaccccaacatggaggggtagggcttgttgctg
actgcctggctgtatcttcacctcttcccagatggaattcactgattttc
tttagtcttcctccaggctctgtacactcctatctgctctattccctttc
ggaattcaatttctggaccaccatgctcctctttgccttctcctgcggcc
agcctcccgcccttctttccctcccctttccacctccggatcacctacac
tgcttcctagaaaagcctcccatcccggacctctgcggccacagctgcct
ctacccttcccctccagctacgaggctcgccaagctttggaccgcgacac
ccccctcccaggaggccggggtggggtgggggtggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129859028_129859951
seq2: B6Ng01-052C08.b_45_967

seq1  GAATTCATTCTATAGCCCAAGGAAGCCTTAAACTTGGGATCCTCTTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTATAGCCCAAGGAAGCCTTAAACTTGGGATCCTCTTGTCT  50

seq1  CAGCTTCCCAAGTAGCTGTGCTTATAGGCAGCTCCGCATGGTCCCACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCCAAGTAGCTGTGCTTATAGGCAGCTCCGCATGGTCCCACTCC  100

seq1  TTATTCTTAATTCTCTGCTACTCAGTTGGATCCACTTTCACTGAAGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTAATTCTCTGCTACTCAGTTGGATCCACTTTCACTGAAGCTCA  150

seq1  AAGTCCAGGATCAACAGCTCACATCCTTGCCAGGCTGAGCTCAGAGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAGGATCAACAGCTCACATCCTTGCCAGGCTGAGCTCAGAGCTGA  200

seq1  TGCTCTTCCAGCGCCTCTTTACAGGAGATTGTGGCAGAGGCTCATGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCAGCGCCTCTTTACAGGAGATTGTGGCAGAGGCTCATGGTGC  250

seq1  TGGCACTGTCCCAATGCCTGTTTATAGGAGCGTTTCCATATCTCACTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGTCCCAATGCCTGTTTATAGGAGCGTTTCCATATCTCACTTAC  300

seq1  ATTTCCGGGAAGTCTCCCTTGTTCCAGCCAGGAAGATCAACAAACACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCGGGAAGTCTCCCTTGTTCCAGCCAGGAAGATCAACAAACACATG  350

seq1  AGCCCAGATAAGTGCAAGGTTCTCCCAGGGCCGGGGGTGTGGGTCACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGATAAGTGCAAGGTTCTCCCAGGGCCGGGGGTGTGGGTCACACT  400

seq1  TTCCCTTTTTGTCCCATATCACAAACAGTAAGCCCCCAGTGTTGGGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTTTGTCCCATATCACAAACAGTAAGCCCCCAGTGTTGGGGTGA  450

seq1  AACCCAGCCCCATGAGGAATCTCTTTCCTTCTCTTTGGAGAAAGCACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCCCCATGAGGAATCTCTTTCCTTCTCTTTGGAGAAAGCACCAG  500

seq1  CACGTGGACTGGAGGGTTAGAAGCTCTCAAAAGGCCACGTCCCATCCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGACTGGAGGGTTAGAAGCTCTCAAAAGGCCACGTCCCATCCCAT  550

seq1  TCCCTGGCATTAGAGACCATACCTGAGTGGGGAGAAGGTCTTTGTAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCATTAGAGACCATACCTGAGTGGGGAGAAGGTCTTTGTAAACC  600

seq1  GTGTGTGCTGGTACACACCTGGTAAGTCTAGCCCTTGGGAGGTAGAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCTGGTACACACCTGGTAAGTCTAGCCCTTGGGAGGTAGAGGCA  650

seq1  GGAGAATCAGGAGTTCAAGGCCAGCCTGGGGCTACTTG-AAACTCTGTCT  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGAGAATCAGGAGTTCAAGGCCAGCCTGGGGCTACTTGAAAACTCTGTCT  700

seq1  CAGAAAAGGGAAAAGAAATATAGGGAGAGAAGGGAGAAACCCCTACATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGGGAAAAGAAATATAGGGAGAGAAGGGAGAAACCCCTACATTT  750

seq1  TTGTCACCTTAAATGGCCAAGTTGGTTGGAAATG-TTAGCACACCCAGGA  798
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  TTGTCACCTTAAATGGCCAAGTTGGTTGGAAATGTTTAGTACACCCAGGA  800

seq1  AGCTAACAATGGTTCCCACCTGAAAGATGGAGGAGACCTTAGATCTCGTA  848
      |||||||||||||||||||||||||||| || ||||||||| ||||||||
seq2  AGCTAACAATGGTTCCCACCTGAAAGAT-GAAGAGACCTTA-ATCTCGTA  848

seq1  TGTCACTTGAAATGTGCCAAGATCAAATCCAAGTACAGAGCCGACCAGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTGAAATGTGCCAAGATCAAATCCAAGTACAGAGCCGACCAGCA  898

seq1  CACAGCAGCCTGTGCTGGCGAATGAA  924
      ||||||| ||||||||||||||||||
seq2  CACAGCA-CCTGTGCTGGCGAATGAA  923

seq1: chr4_129986254_129986992
seq2: B6Ng01-052C08.g_70_806 (reverse)

seq1  CTCCACTCCACCCCACCCCACCCCGGCCTCCTGGGAGGGGGGTGTCGCGG  50
      ||||||    ||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAC----CCCCACCCCACCCCGGCCTCCTGGGAGGGGGGTGTCGCGG  46

seq1  TCC-AAGCTTGGCGAGCCTCGTAGCTGGAGGGGAAGGGTAGAGGCAGCTG  99
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGCTTGGCGAGCCTCGTAGCTGGAGGGGAAGGGTAGAGGCAGCTG  96

seq1  TGGCCGCAGAGGTCCGGGATGGGAGGC-TTTCTAGGAAGCAGTGTAGGTG  148
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGCCGCAGAGGTCCGGGATGGGAGGCTTTTCTAGGAAGCAGTGTAGGTG  146

seq1  ATCCGGAGGTGGAAAGGGGAGGGAAAGAAGGGCGGGAGGCTGGCCGCAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGAGGTGGAAAGGGGAGGGAAAGAAGGGCGGGAGGCTGGCCGCAGG  196

seq1  AGAAGGCAAAGAGGAGCATGGTGGTCCAGAAATTGAATTCCGAAAGGGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAAAGAGGAGCATGGTGGTCCAGAAATTGAATTCCGAAAGGGAA  246

seq1  TAGAGCAGATAGGAGTGTACAGAGCCTGGAGGAAGACTAAAGAAAATCAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGATAGGAGTGTACAGAGCCTGGAGGAAGACTAAAGAAAATCAG  296

seq1  TGAATTCCATCTGGGAAGAGGTGAAGATACAGCCAGGCAGTCAGCAACAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCATCTGGGAAGAGGTGAAGATACAGCCAGGCAGTCAGCAACAA  346

seq1  GCCCTACCCCTCCATGTTGGGGTAGTGAAGAGGCCTCTCTCTGGAAGATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACCCCTCCATGTTGGGGTAGTGAAGAGGCCTCTCTCTGGAAGATG  396

seq1  CCCTGGTTCTCACCAGCCTGACCTTCACCTACAGTGTGTGCAGCCACCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTCTCACCAGCCTGACCTTCACCTACAGTGTGTGCAGCCACCCC  446

seq1  TGGGATCAGTCGGAGACGCTGCTGCTAGAGCAGGGCAAGACGACCACTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCAGTCGGAGACGCTGCTGCTAGAGCAGGGCAAGACGACCACTAC  496

seq1  ACATAGGCTTCCCGGCCGCACCAGTCGGCCACCGGATCAGTGCTGGGGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGCTTCCCGGCCGCACCAGTCGGCCACCGGATCAGTGCTGGGGAT  546

seq1  AGGGTGAAGAAAGCCTGGGATCGAGCAGAGGGTGTCAGAAGAAAGGTGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAAGAAAGCCTGGGATCGAGCAGAGGGTGTCAGAAGAAAGGTGAA  596

seq1  GAGCTATGAAGGGAGAGTGTGGCTTGGGGCTGGGGAAATTGTGTGGTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATGAAGGGAGAGTGTGGCTTGGGGCTGGGGAAATTGTGTGGTGTG  646

seq1  GGCGGTGACACAACGCCTTTAACCAGCACTCTGGGAAGCAGAGGCAGGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTGACACAACGCCTTTAACCAGCACTCTGGGAAGCAGAGGCAGGTG  696

seq1  AATCTCCCGAGTTCTAGGCCTGGTCTATACAGAGAGAATTC  739
      |||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCCGAGTTCTAGGCCTGGTCTATACAGAGAGAATTC  737