BAC Information

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BAC

Clone NameB6Ng01-052L21
Chromosome4 (Build37)4 (Build37)
Map Location 145,731,191 - 145,731,914145,888,723 - 145,889,847
singlet/doubletsingletsinglet
Overlap geneLOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052L21.bB6Ng01-052L21.g
ACCDH876005DH876006
length1,1461,129
definitionDH876005|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L21, 5' end.DH876006|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,731,191 - 145,731,914)(145,888,723 - 145,889,847)
sequence
gaattctctgatgaattctcaaacagccattttcagtaaaggatttgtca
cattcactacatttgtagggtttctctcctgtatgaattctctgatgaat
cctcagactgcctttgaaagtaaagcatttgtcacattcactgcatttgt
aaggtttctctcctgtatgaattctctgatgaatcctcaaactgaatttt
ttagtaaagcatttgtcacattcactgcatttgtaaggtttctctcctgt
atgaattctctgatgaattctcagatggccattttcagtaaaggatttgt
cacatcgactacatttgtaaggtttctcacctgtatgatttctctgatga
attctcagatggccattttcagtaaaggatttgtcacattgactacattt
gtaaggtttctctcctgtatgaattctctgatgaatattaagatgggatt
tttgggtaaagcatttgtcacattcactgcatttgtaaggtttatctcct
gtatgaatcctctgatgaattctcagattgcctttttcagtaaagcattt
ctcacatacaatgcatttgtaaggtttctctcctgtatgaattctctgat
gaatattaagatgagatttttgggtaaagcatttgtcacattcactacat
ttgtaaggtttctctcctgtatgaattctctgatgaatattaagatgaaa
tttgtgggtaaagcatttgtcacattcactacatttataaattttctctt
ctgcatgaattccctgatggatactaagatcgatctgatgggtaaagcat
ttgtcacttttactacttctgtaatgtttcttttcatgataaattctctg
ctgactttgaagtttgtctctctgggtaagatatttgtcaaatttactac
atttgtaaggttcactccagtattatttcgtttcaccatgactttatgtt
tagaataaaagccttctcagattctgcatttccgttgtgttttttcttct
gcatgtggattccctgatgagactaatggtagaaaacaaagttaaactgt
ttaagagttaatgtatttgcaaacttcttaagtgttcctgggctaagtct
ttttggtcgaatttgagagcacacaaggtgtgattagttttgtaag
gaattcttccaaaagggaaacttttcaaatacattgacggtttgaatcct
ttattttggcctatctcttagaatgtaatagataatttatacaggcaaga
atcttaacaaatataatatatgctgaaatatctttgacttcatttcagtg
cagaaaaaatatgtaaaaaaaatttttatgggaaaaatagttctcctggg
gaaatgtggcatatgttttacacgggtaatattcttttcaacagtcagtg
ctctaaactagagaattattatgaatctgaaaacttttgaaaaccttcat
gcaatgttcaaatcttagataatgtcaactattatgctggcagtaactct
gaatatatgatagtgaagaaacattttcattaaacttttacttgttcacc
ctcaaatattatatgatgaagtcaggtgtgaaagccagaagaatatgatg
ttgtgcaacaattcatggagatagaaatgatccattccaaaaggaaacta
aataaagtgtactatcgccttcaaaatgtctaataaaactggcagcattt
tgtatatttaattcaaatgaagaaattgacacagattgtagttgatagtg
tatttgacaaactgagccaccaagactgcatgttcttaatcctataatat
gcctacagatgtgaagtgtgctttgagtatccagtattcattattcttat
cacgtcaatgtgacaaatgatttattggtttcacgtttcaggatagtgac
tgactatgagtcccttatgctctgtcaacatctccttcctcattgccctg
taaataaagctgaatattttaacaaggttgacttggctgttttcagtttg
cacttataattagatgaataaatgttgcatcatcgctggaactatttctc
ataaagtatttgctgaagtcatgaatattttctgtaaacctgtaacttaa
acttaatatttgtgattttcagctggtcaataacaaccttgacccacata
cgaataatatgactgtattataggtgtttagcattagaaatttagcacag
ttgttatagaaaatgaatgatttttggttacctaaaacaaggatgattct
attgcaatattccaggcttactgcctcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145731191_145731914
seq2: B6Ng01-052L21.b_475_1189

seq1  TGAATATTAAGATGGGATTTTTGGGTAAAGCATTTGTCACATTCACTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTAAGATGGGATTTTTGGGTAAAGCATTTGTCACATTCACTGCA  50

seq1  TTTGTAAGGTTTATCTCCTGTATGAATCCTCTGATGAATTCTCAGATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGGTTTATCTCCTGTATGAATCCTCTGATGAATTCTCAGATTGC  100

seq1  CTTTTTCAGTAAAGCATTTCTCACATACAATGCATTTGTAAGGTTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAGTAAAGCATTTCTCACATACAATGCATTTGTAAGGTTTCTCT  150

seq1  CCTGTATGAATTCTCTGATGAATATTAAGATGAGATTTTTGGGTAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGAATTCTCTGATGAATATTAAGATGAGATTTTTGGGTAAAGCA  200

seq1  TTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCT  250

seq1  GATGAATATTAAGATGAAATTTGTGGGTAAAGCATTTGTCACATTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GATGAATATTAAGATGAAATTTGTGGGTAAAGCATTTGTCACATTCACTA  300

seq1  CATTTATAAATTTTCTCTTCTGCATGAATTCCCTGATGGATACTAAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAAATTTTCTCTTCTGCATGAATTCCCTGATGGATACTAAGATC  350

seq1  GATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTCTGAAATGTTTCT  400
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTCTGTAATGTTTCT  400

seq1  TTTCATGATAAATTCTCTGCTGACTTTGAAGTTTGTCTCTCTGGGTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGATAAATTCTCTGCTGACTTTGAAGTTTGTCTCTCTGGGTAAGA  450

seq1  TATTTGTCAAATTTACTACATTTGTAAGGGTTCACTCCAGTATTATTTCG  500
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATTTGTCAAATTTACTACATTTGTAA-GGTTCACTCCAGTATTATTTCG  499

seq1  TTTCACCATGACTTTATGTTTAGAAATAAAAGCCTTCTCAGATTCTGCAT  550
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTCACCATGACTTTATGTTTAG-AATAAAAGCCTTCTCAGATTCTGCAT  548

seq1  TTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCCTGATTGAGACTAATG  600
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCCTGA-TGAGACTAATG  597

seq1  GTAGAAAACAAAGTTAAACTGTTTACAGAGTCATTGTATTTGCAAACTTC  650
      ||||||||||||||||||||||||| ||||| | ||||||||||||||||
seq2  GTAGAAAACAAAGTTAAACTGTTTA-AGAGTTAATGTATTTGCAAACTTC  646

seq1  TTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCGAAAATTGAAGAGCAT  700
      || ||||||||||||| |||||||||||  | |||  ||||  |||||| 
seq2  TTAAGTGTTCCTGGGC-TAAGTCTTTTT--GGTCG--AATTTGAGAGCAC  691

seq1  CAGAGGTGTGATTAGTTTTGTAAG  724
         |||||||||||||||||||||
seq2  ACAAGGTGTGATTAGTTTTGTAAG  715

seq1: chr4_145888723_145889847
seq2: B6Ng01-052L21.g_68_1196

seq1  GAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGACGGTTTGAATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGACGGTTTGAATCCT  50

seq1  TTATTTTGGCCTATCTCTTAGAATGTAATAGATAATTTATACAGGCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGGCCTATCTCTTAGAATGTAATAGATAATTTATACAGGCAAGA  100

seq1  ATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCATTTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCATTTCAGTG  150

seq1  CAGAAAAAATATGTAAAAAAAATTTTTATGGGAAAAATAGTTCTCCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAATATGTAAAAAAAATTTTTATGGGAAAAATAGTTCTCCTGGG  200

seq1  GAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACAGTCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACAGTCAGTG  250

seq1  CTCTAAACTAGAGAATTATTATGAATCTGAAAACTTTTGAAAACCTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACTAGAGAATTATTATGAATCTGAAAACTTTTGAAAACCTTCAT  300

seq1  GCAATGTTCAAATCTTAGATAATGTCAACTATTATGCTGGCAGTAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTCAAATCTTAGATAATGTCAACTATTATGCTGGCAGTAACTCT  350

seq1  GAATATATGATAGTGAAGAAACATTTTCATTAAACTTTTACTTGTTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATGATAGTGAAGAAACATTTTCATTAAACTTTTACTTGTTCACC  400

seq1  CTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCAGAAGAATATGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCAGAAGAATATGATG  450

seq1  TTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGGAAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGGAAACTA  500

seq1  AATAAAGTGTACTATCGCCTTCAAAATGTCTAATAAAACTGGCAGCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTGTACTATCGCCTTCAAAATGTCTAATAAAACTGGCAGCATTT  550

seq1  TGTATATTTAATTCAAATGAAGAAATTGACACAGATTGTAGTTGATAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTTAATTCAAATGAAGAAATTGACACAGATTGTAGTTGATAGTG  600

seq1  TATTTGACAAACTGAGCCACCAAGACTGCATGTTCTTAATCCTATAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGACAAACTGAGCCACCAAGACTGCATGTTCTTAATCCTATAATAT  650

seq1  GCCTACAGATGTGAAGTGTGCTTTGAGTATCCAGTATTCATTATTCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAGATGTGAAGTGTGCTTTGAGTATCCAGTATTCATTATTCTTAT  700

seq1  CACGTCAATGTGACAAATGATTTATTGGTTTCACGTTTCAGGATAGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCAATGTGACAAATGATTTATTGGTTTCACGTTTCAGGATAGTGAC  750

seq1  TGACTATGAGTCCCTTATGCTCTGTCAACATCTCCTTCCTCATTGCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATGAGTCCCTTATGCTCTGTCAACATCTCCTTCCTCATTGCCCTG  800

seq1  TAAATAAAGCTGAATATTTTAACAAGGTTGACTTGGCTGTTTTCAGTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAGCTGAATATTTTAACAAGGTTGACTTGGCTGTTTTCAGTTTG  850

seq1  CACTTATAATTAGATGAATAAATGTTGCATCATCGCTGGAACTATTTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATAATTAGATGAATAAATGTTGCATCATCGCTGGAACTATTTCTC  900

seq1  ATAAAGTATTTGCTGAAGTCATGAATATTTTCTGTAAACCTGTAACTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTATTTGCTGAAGTCATGAATATTTTCTGTAAACCTGTAACTTAA  950

seq1  ACTTAATATTTGTGATTTTCAGCTGGTCAATAACAACCTTGACCCACATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATATTTGTGATTTTCAGCTGGTCAATAACAACCTTGACCCACATA  1000

seq1  CGAATAATATGAACTGTA-TATAAGTGTTTAGCATTAGAAAATTTAGCAA  1049
      ||||||||||| |||||| |||| |||||||||||||| ||||||||| |
seq2  CGAATAATATG-ACTGTATTATAGGTGTTTAGCATTAG-AAATTTAGC-A  1047

seq1  CAG-TGTATTAG-AGATG-ATGATTTGT-GTTAACTAAAACAGGGATGAT  1095
      ||| |||  ||| | ||| ||||||| | |||| |||||||| |||||||
seq2  CAGTTGTTATAGAAAATGAATGATTTTTGGTTACCTAAAACAAGGATGAT  1097

seq1  TCTA-TGCAATATTCCAGGCTTACTG-CTCGA  1125
      |||| ||||||||||||||||||||| |||||
seq2  TCTATTGCAATATTCCAGGCTTACTGCCTCGA  1129