BAC Information

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BAC

Clone NameB6Ng01-053C23
Chromosome4 (Build37)
Map Location 38,510,159 - 38,639,155
singlet/doubletdoublet
Overlap geneLOC665520
Upstream geneLOC277771, LOC100039448
Downstream geneLOC100039487, 1700009N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053C23.bB6Ng01-053C23.g
ACCDH876308DH876309
length1,102543
definitionDH876308|Mus musculus domesticus DNA, BAC clone: B6Ng01-053C23, 5' end.DH876309|Mus musculus domesticus DNA, BAC clone: B6Ng01-053C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,510,159 - 38,511,270)(38,638,607 - 38,639,155)
sequence
gaattctaggacagtcagagctacacaaagaaaccctgtctcaaaaaaac
taaaataaataaataaataaataaataaataacatttgttttaaaattta
gttattgaaaaacacaaaatataatcattcataggaagtacatcctaatg
tttaacatcgtaaagaaaacagagatgttctggcaatgcataaatacata
tgtactattattcagtgttccccacttagtgatttactcaaggaaaataa
aataagattcaaaataaacaataacatttaataattgggttattaaagat
tgaagtagaaataaccaaatgatataaatatgaataggtgaccagtatat
ataatatacagagttagtattccatcagcagtgttacaaaaacaatttct
gatggaatttgtatactgttgactagtctgtctcttagcattaactacag
tttttatttgtagtagatggcaattaaaacagagactcagaattgattga
gatgcagagaatgaaagaatgcttaatactgaggctcttacaaggaagta
gtgttttctgggtaaagctgaattcacaacagtggaaaagcatgtacaag
acctgtacaaacttaagccacaaaaaaatcctgcaggagagaaaagatgg
gcataaagccccactcctagtcaaaagctattggaaattaatagcttctg
gtagaggatcaatcagtttctttaagggcctggtgagttgactgtgctat
agtaagattcacttatccaacagtatatggggtgggaaaagaacttgatc
caaataacaagtatatttttaacaagtgcatagggcagcataaattgtac
tttgttggttttcaaaaagagaaaaaagtagaacacaacctatttgggta
ataacacacaagtgatgtattgggaaaacataaaaagtggctgccattgt
gcagtaagaagcagtaaaaactgagcagacacaggttttatatagggctt
cttgaatgggtcgtgaagcttacaggatttcctaaaaacgtcaaattcca
ggtctgatctggatcttcaggtttggtgggattttgtagcctgatcctgg
gc
attcaccccctgagcatctataaagagttacgctgagaatgaaacctctg
aagaatggtcctgaaaaatgtcattcaaatgatgttaatatgcttatgga
ggtaggcatgccttgcactcattagacaaatatcctaggcagttctgatc
tacaatatattcctaactttttgtgactcagttatgggtaaggcaaactt
tcttatacaaagtactggaacaaaagcagaaaaaatactactgatgaaca
gctttatattagatgcatagtgctaacacaaaattgaaaaatgtggtcac
catgattgccagtgttgttactacatccatctctttctaaggaagttgta
aacaaacaaacaaacaaacaaaaaacagattgccttgtatggcatcattg
ggaggggaggcccttggtcctgtggtggcttattgccccaggagaggagg
atgctggagaggtaagcctggagtgggttggtggatatacacctcttaga
ggcaaagggcagaaaggtggaataggggtgagggtgggggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_38510159_38511270
seq2: B6Ng01-053C23.b_44_1145

seq1  GAATTCTAGGACAGTCAGAGCTACACAAAGAAACCCTGTCTCAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGACAGTCAGAGCTACACAAAGAAACCCTGTCTCAAAAAAAC  50

seq1  TAAAATAAATAAATAAATAAATAAATAAATAACATTTGTTTTAAAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATAAATAAATAAATAAATAAATAACATTTGTTTTAAAATTTA  100

seq1  GTTATTGAAAAACACAAAATATAATCATTCATAGGAAGTACATCCTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGAAAAACACAAAATATAATCATTCATAGGAAGTACATCCTAATG  150

seq1  TTTAACATCGTAAAGAAAACAGAGATGTTCTGGCAATGCATAAATACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATCGTAAAGAAAACAGAGATGTTCTGGCAATGCATAAATACATA  200

seq1  TGTACTATTATTCAGTGTTCCCCACTTAGTGATTTACTCAAGGAAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTATTATTCAGTGTTCCCCACTTAGTGATTTACTCAAGGAAAATAA  250

seq1  AATAAGATTCAAAATAAACAATAACATTTAATAATTGGGTTATTAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATTCAAAATAAACAATAACATTTAATAATTGGGTTATTAAAGAT  300

seq1  TGAAGTAGAAATAACCAAATGATATAAATATGAATAGGTGACCAGTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAGAAATAACCAAATGATATAAATATGAATAGGTGACCAGTATAT  350

seq1  ATAATATACAGAGTTAGTATTCCATCAGCAGTGTTACAAAAACAATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATACAGAGTTAGTATTCCATCAGCAGTGTTACAAAAACAATTTCT  400

seq1  GATGGAATTTGTATACTGTTGACTAGTCTGTCTCTTAGCATTAACTACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAATTTGTATACTGTTGACTAGTCTGTCTCTTAGCATTAACTACAG  450

seq1  TTTTTATTTGTAGTAGATGGCAATTAAAACAGAGACTCAGAATTGATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTGTAGTAGATGGCAATTAAAACAGAGACTCAGAATTGATTGA  500

seq1  GATGCAGAGAATGAAAGAATGCTTAATACTGAGGCTCTTACAAGGAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAGAATGAAAGAATGCTTAATACTGAGGCTCTTACAAGGAAGTA  550

seq1  GTGTTTTCTGGGTAAAGCTGAATTCACAACAGTGGAAAAGCATGTACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCTGGGTAAAGCTGAATTCACAACAGTGGAAAAGCATGTACAAG  600

seq1  ACCTGTACAAACTTAAGCCACAAAAAAATCCTGCAGGAGAGAAAAGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTACAAACTTAAGCCACAAAAAAATCCTGCAGGAGAGAAAAGATGG  650

seq1  GCATAAAGCCCCACTCCTAGTCAAAAGCTATTGGAAATTAATAGCTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAGCCCCACTCCTAGTCAAAAGCTATTGGAAATTAATAGCTTCTG  700

seq1  GTAGAGGATCAATCAGTTTCTTTAAGGGCCTGGTGAGTTGACTGTGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGATCAATCAGTTTCTTTAAGGGCCTGGTGAGTTGACTGTGCTAT  750

seq1  AGTAAGATTCACTTATCCAACAGTATATGGGGTGGGAAAAGAACTTGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATTCACTTATCCAACAGTATATGGGGTGGGAAAAGAACTTGATC  800

seq1  CAAATAACAAGTATATTTTTAACAAGTGCATAGGGCAGCATAAATTGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACAAGTATATTTTTAACAAGTGCATAGGGCAGCATAAATTGTAC  850

seq1  TTTGTTGGTTTTCAAAAAGAGAAAAAAGTAGAACACAACCTATTTGGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTGTTGGTTTTCAAAAAGAGAAAAAAGTAGAACACAACCTATTTGGGT-  899

seq1  AATAACACACAAGTGATGTATTGGGAAAACATAAAAAGGTGGCTGCCATT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATAACACACAAGTGATGTATTGGGAAAACATAAAAA-GTGGCTGCCATT  948

seq1  GTGCAGTAAGAAGCAGTAAAAAACTGAGCAAGACACAGGTTTTATATAGG  1000
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  GTGCAGTAAGAAGCAGT-AAAAACTGAGC-AGACACAGGTTTTATATAGG  996

seq1  GCTTCTTGAATGGGTTCGTGAAGCTTTACAGGATGTCCTAGAATACGTCA  1050
      |||||||||||||| ||||||||| ||||||||| ||||| || ||||||
seq2  GCTTCTTGAATGGG-TCGTGAAGC-TTACAGGATTTCCTA-AAAACGTCA  1043

seq1  AATTCCAGGGTCTGATCTTGAATCTTCAGGGTTTGGTGGGATTTTGTAGC  1100
      ||||||| ||||||||| || ||||||| |||||||||||||||||||||
seq2  AATTCCA-GGTCTGATC-TGGATCTTCA-GGTTTGGTGGGATTTTGTAGC  1090

seq1  CTGATCCTGGGC  1112
      ||||||||||||
seq2  CTGATCCTGGGC  1102

seq1: chr4_38638607_38639155
seq2: B6Ng01-053C23.g_67_615 (reverse)

seq1  TTACCCCCACCCTCACCCCTATTCCACCTTTCTGCCCTTTGCCTCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCCACCCTCACCCCTATTCCACCTTTCTGCCCTTTGCCTCTAAGA  50

seq1  GGTGTATATCCACCAACCCACTCCAGGCTTACCTCTCCAGCATCCTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATATCCACCAACCCACTCCAGGCTTACCTCTCCAGCATCCTCCTC  100

seq1  TCCTGGGGCAATAAGCCACCACAGGACCAAGGGCCTCCCCTCCCAATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGCAATAAGCCACCACAGGACCAAGGGCCTCCCCTCCCAATGAT  150

seq1  GCCATACAAGGCAATCTGTTTTTTGTTTGTTTGTTTGTTTGTTTACAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACAAGGCAATCTGTTTTTTGTTTGTTTGTTTGTTTGTTTACAACT  200

seq1  TCCTTAGAAAGAGATGGATGTAGTAACAACACTGGCAATCATGGTGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGAAAGAGATGGATGTAGTAACAACACTGGCAATCATGGTGACCA  250

seq1  CATTTTTCAATTTTGTGTTAGCACTATGCATCTAATATAAAGCTGTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCAATTTTGTGTTAGCACTATGCATCTAATATAAAGCTGTTCAT  300

seq1  CAGTAGTATTTTTTCTGCTTTTGTTCCAGTACTTTGTATAAGAAAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTATTTTTTCTGCTTTTGTTCCAGTACTTTGTATAAGAAAGTTTG  350

seq1  CCTTACCCATAACTGAGTCACAAAAAGTTAGGAATATATTGTAGATCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCCATAACTGAGTCACAAAAAGTTAGGAATATATTGTAGATCAGA  400

seq1  ACTGCCTAGGATATTTGTCTAATGAGTGCAAGGCATGCCTACCTCCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTAGGATATTTGTCTAATGAGTGCAAGGCATGCCTACCTCCATAA  450

seq1  GCATATTAACATCATTTGAATGACATTTTTCAGGACCATTCTTCAGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTAACATCATTTGAATGACATTTTTCAGGACCATTCTTCAGAGGT  500

seq1  TTCATTCTCAGCGTAACTCTTTATAGATGCTCAGGGGGTGAATGAATTC  549
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTCAGCGTAACTCTTTATAGATGCTCAGGGGGTGAATGAATTC  549