BAC Information

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BAC

Clone NameB6Ng01-053F04
Chromosome4 (Build37)
Map Location 27,036,619 - 27,037,242
singlet/doubletsinglet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053F04.bB6Ng01-053F04.g
ACCDH876404DH876405
length6301,207
definitionDH876404|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F04, 5' end.DH876405|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataatctctaaaatcttgttttcattaataatattgaaactaca
atctttcttctatttcatggtaattcatgacatcaaagttactcaaattc
agattttttttttaataggatcaaatcttggaagtacttctttcacttgc
atttgcctgcagttggaatctccatccttttctcgtattttttacactat
tttactgattatcattaagtctttttttgcctctgcataatgactgactg
acgccagcttttctgtgaacacaactccacagaataggcattagtatatt
ccccatctagatgtcaattcaatgtgacctagtgagaactcaaggaaaac
ctaatttgaggctttaaatttccttgttgtatttcccaaggataggaaaa
atatgttttatcaaatacatttatttctgtatccatcaacattttttaca
tttttctggaatttatgctcattatttccaggatgaatcctctattccta
gtgtcatgcacttcattaaataatgatttattttgttctatccctctctc
tctctctctctctctctctctctctctctctctctctcgagtgtatatgt
gtgtctctctgtgtgtgtgtgtatgtgtgt
gaattcctaggcagagaaattcgatgacaaaagaagatcaaggggataca
atttggaaaggaagtcaaaatatcactagtttcagatgatatgatagtat
atataagagatcctgagaattataccagagaactcctaaaccagataaac
agcttcagtgcagtagctggatatataattaactcaaaccaatcagtagc
ctttctctatacaaaggataaacaggctgagaaagaaattaggggaaaaa
acacacttcagaatagtcacaaataatatagaataccttggtgtgattct
aactaaggaagtgaaatatctgtatgataataacttcaagtctctgaaga
aagaaattgaagaagatctcagaaatggaaagatctcccatgctcatgga
ttgacaggattaacatagtcaaaatggctatcttggtgaaaggaatctac
agattcaatgcaatccccctgaaaattccaactcaattcttcacagagtt
agaaagggcaatttgcaaattcatctcgaatgatgaaaaaactaggatag
taaaacctcttctcaagtataaaagaacctctggtggaattaccatgcct
gacattaagcggtactacagagcaattgtgataaaaaaaatttatggtac
tagtacagagataaacatgtagatcaatagaatataattgaagacccagc
aatgaacccatataaatatgttcacttgatctttgacaagggagctaaaa
ccgtccagtggaaaaaaagacagtactttcaacaaatggggcacgcacaa
ctggtggttaacatgtagaagaatgcaaattgacccattcttttctcttt
gtacaaagctcaagtctaagtggatcaaagaactccaaataaagcagaga
aactgaactttttagaggagaaagtgtggaaagccttaaagatatgggca
caggggaaaattcctgacagagagcatggcttctactgtagatgagatca
caatgggacctcgtaaatggcatgttgtagcaaagaactgtcaaaagtca
aagatccccacgatgggaagatttaccaatctaatctgtaggaaccctat
caatattcaggattcagagcctgatccgaatcataccttaaattggtcaa
gctacaatccactgaatctgaagtgaaccgtgaaaaggttcacctcttat
ctcctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27036619_27037242
seq2: B6Ng01-053F04.b_46_675 (reverse)

seq1  ACACACACACACACACACAC------ACACACACACACACACGAGAGAGA  44
      ||||||| ||||||||||||      ||||||| | |||| |||||||||
seq2  ACACACATACACACACACACAGAGAGACACACATATACACTCGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGATAGAACAAAA  94
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGATAGAACAAAA  100

seq1  TAAATCATTATTTAATGAAGTGCATGACACTAGGAATAGAGGATTCATCC  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATTATTTAATGAAGTGCATGACACTAGGAATAGAGGATTCATCC  150

seq1  TGGAAATAATGAGCATAAATTCCAGAAAAATGTAAAAAATGTTGATGGAT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATAATGAGCATAAATTCCAGAAAAATGTAAAAAATGTTGATGGAT  200

seq1  ACAGAAATAAATGTATTTGATAAAACATATTTTTCCTATCCTTGGGAAAT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATAAATGTATTTGATAAAACATATTTTTCCTATCCTTGGGAAAT  250

seq1  ACAACAAGGAAATTTAAAGCCTCAAATTAGGTTTTCCTTGAGTTCTCACT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGGAAATTTAAAGCCTCAAATTAGGTTTTCCTTGAGTTCTCACT  300

seq1  AGGTCACATTGAATTGACATCTAGATGGGGAATATACTAATGCCTATTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACATTGAATTGACATCTAGATGGGGAATATACTAATGCCTATTCT  350

seq1  GTGGAGTTGTGTTCACAGAAAAGCTGGCGTCAGTCAGTCATTATGCAGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTGTGTTCACAGAAAAGCTGGCGTCAGTCAGTCATTATGCAGAG  400

seq1  GCAAAAAAAGACTTAATGATAATCAGTAAAATAGTGTAAAAAATACGAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAAAGACTTAATGATAATCAGTAAAATAGTGTAAAAAATACGAGA  450

seq1  AAAGGATGGAGATTCCAACTGCAGGCAAATGCAAGTGAAAGAAGTACTTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGGAGATTCCAACTGCAGGCAAATGCAAGTGAAAGAAGTACTTC  500

seq1  CAAGATTTGATCCTATTAAAAAAAAAATCTGAATTTGAGTAACTTTGATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTGATCCTATTAAAAAAAAAATCTGAATTTGAGTAACTTTGATG  550

seq1  TCATGAATTACCATGAAATAGAAGAAAGATTGTAGTTTCAATATTATTAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATTACCATGAAATAGAAGAAAGATTGTAGTTTCAATATTATTAA  600

seq1  TGAAAACAAGATTTTAGAGATTATGAATTC  624
      ||||||||||||||||||||||||||||||
seq2  TGAAAACAAGATTTTAGAGATTATGAATTC  630