BAC Information

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BAC

Clone NameB6Ng01-053F16
Chromosome4 (Build37)
Map Location 73,519,349 - 73,520,490
singlet/doubletsinglet
Overlap geneLOC545637
Upstream geneEG384113, LOC667713, LOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768
Downstream geneLOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053F16.bB6Ng01-053F16.g
ACCDH876427DH876428
length1,1151,135
definitionDH876427|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F16, 5' end.DH876428|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagatttgcttttggcaagatagccatt
tttacaatgttggtcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttcttcagggacttgaagtttttatcat
acagatctttcacttccttcgttagagtcacgccgagatattttatatta
tttgtgcttatgagaggtgttgtttccctaatttctttctcagcctgtat
atctttgtgtaaagaaggccatgactggttgagttaattttaattcagcc
acttcacgagcctgttatcagctatgagtctctggtggaaattttagggc
accatgtaatatctg
gaattcatcagtgtcttcagctttagaaaataaataggagttcagattta
ggttttagccaagggcaggtttctggcaatatcaactaacctaggaggac
cacacagtctcaatttaaaaatatcagagacactgagtgaaaccgaggtc
agttcattgaagtttcttttatgaattggggtttccttccatggtgctgg
ccatccgatagctcactaacactaagcccaacctatctaggataccacac
tgacgtgattgcctctggctccccctcccaagtactggaattaaaggtat
gggatgccaatgtcacatgtttcctaaatatcttcacttcttggaaagtt
aggctgaaaagcagacacaagcagaactttattggtttgtttccttctaa
ctatgatataatcaacttgacaacaaagaacagccatgataagcccacct
cctgtcaactcctgactaggatgtcaccttaggtcatgcctcctttccaa
aggaaacaataacaataaggatacaatcacagaagggtgataaagccatc
caaggaggaatggcaaatgcattgcacatttaacagtgtcatagtcatac
ctaacgcaatataatatcccccacacaaccccaaaagcagggaaaatgtc
aaaggatatatgggagttccaatccttccaacaggaaatcagaatttcat
cacccttggacatcatcagtgatgagttccccttaagctttccactagtg
ggagggatactataatgccaatgtgcatacctggagagatggcaccacca
atgcagagggaaggtgcataggaagctggtggcttactgtgcccatcaaa
ccaaagacctgagtgaggagagaagaaagagaaggtgtttaaaatggcac
cctcactctctttgaggcactataagtggttgtctggactctgggtcaga
gtcaagtatgacaagaacacattcattgccttgggagtgaagaggaggtt
tgacacccagagcagccattattggaaataaagcctatgggaaaaagact
gcagcagttgtgtactcttgctcttgccaagctgaggctttttttgggac
cttcaaatccccctcactaagagactctactggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_73519349_73520490
seq2: B6Ng01-053F16.g_68_1202

seq1  GAATTCATCAGTGTCTTCAGCTTTAGAAAATAAATAGGAGTTCAGATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTGTCTTCAGCTTTAGAAAATAAATAGGAGTTCAGATTTA  50

seq1  GGTTTTAGCCAAGGGCAGGTTTCTGGCAATATCAACTAACCTAGGAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAGCCAAGGGCAGGTTTCTGGCAATATCAACTAACCTAGGAGGAC  100

seq1  CACACAGTCTCAATTTAAAAATATCAGAGACACTGAGTGAAACCGAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGTCTCAATTTAAAAATATCAGAGACACTGAGTGAAACCGAGGTC  150

seq1  AGTTCATTGAAGTTTCTTTTATGAATTGGGGTTTCCTTCCATGGTGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTGAAGTTTCTTTTATGAATTGGGGTTTCCTTCCATGGTGCTGG  200

seq1  CCATCCGATAGCTCACTAACACTAAGCCCAACCTATCTAGGATACCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCGATAGCTCACTAACACTAAGCCCAACCTATCTAGGATACCACAC  250

seq1  TGACGTGATTGCCTCTGGCTCCCCCTCCCAAGTACTGGAATTAAAGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTGATTGCCTCTGGCTCCCCCTCCCAAGTACTGGAATTAAAGGTAT  300

seq1  GGGATGCCAATGTCACATGTTTCCTAAATATCTTCACTTCTTGGAAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCCAATGTCACATGTTTCCTAAATATCTTCACTTCTTGGAAAGTT  350

seq1  AGGCTGAAAAGCAGACACAAGCAGAACTTTATTGGTTTGTTTCCTTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAAAGCAGACACAAGCAGAACTTTATTGGTTTGTTTCCTTCTAA  400

seq1  CTATGATATAATCAACTTGACAACAAAGAACAGCCATGATAAGCCCACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATATAATCAACTTGACAACAAAGAACAGCCATGATAAGCCCACCT  450

seq1  CCTGTCAACTCCTGACTAGGATGTCACCTTAGGTCATGCCTCCTTTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAACTCCTGACTAGGATGTCACCTTAGGTCATGCCTCCTTTCCAA  500

seq1  AGGAAACAATAACAATAAGGATACAATCACAGAAGGGTGATAAAGCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAATAACAATAAGGATACAATCACAGAAGGGTGATAAAGCCATC  550

seq1  CAAGGAGGAATGGCAAATGCATTGCACATTTAACAGTGTCATAGTCATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGAATGGCAAATGCATTGCACATTTAACAGTGTCATAGTCATAC  600

seq1  CTAACGCAATATAATATCCCCCACACAACCCCAAAAGCAGGGAAAATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACGCAATATAATATCCCCCACACAACCCCAAAAGCAGGGAAAATGTC  650

seq1  AAAGGATATATGGGAGTTCCAATCCTTCCAACAGGAAATCAGAATTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATATATGGGAGTTCCAATCCTTCCAACAGGAAATCAGAATTTCAT  700

seq1  CACCCTTGGACATCATCAGTGATGAGTTCCCCTTAAGCTTTCCACTAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGGACATCATCAGTGATGAGTTCCCCTTAAGCTTTCCACTAGTG  750

seq1  GGAGGGATACTATAATGCCAATGTGCATACCTGGAGAGATGGCACCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGATACTATAATGCCAATGTGCATACCTGGAGAGATGGCACCACCA  800

seq1  ATGCAGAGGGAAGGTGCATAGGAAGCTGGTGGCTTACTGTGCCCATCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGGGAAGGTGCATAGGAAGCTGGTGGCTTACTGTGCCCATCAAA  850

seq1  CCAAAGACCTGAGTGAGGAGAGAAGAAAGAGAAGGTGTTTAAAATGGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGACCTGAGTGAGGAGAGAAGAAAGAGAAGGTGTTTAAAATGGCAC  900

seq1  CCTCACTCTCTTTGAGGCACTATAAGTGGTTGTCTGGACTCTGGGTCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCTCTTTGAGGCACTATAAGTGGTTGTCTGGACTCTGGGTCAGA  950

seq1  GTCAAGTATGAACAAGAACACATTCCATTGCCTT-GGAGTGACAGAGGAA  999
      |||||||||| ||||||||||||| ||||||||| ||||||| |||||| 
seq2  GTCAAGTATG-ACAAGAACACATT-CATTGCCTTGGGAGTGA-AGAGGAG  997

seq1  GTTTGACACACAGAGCAGCCCACTATGGGAAATAAAGGCCTATGGGAAAA  1049
      ||||||||| |||||||| ||| ||| ||||||||| |||||||||||||
seq2  GTTTGACACCCAGAGCAG-CCATTATTGGAAATAAA-GCCTATGGGAAAA  1045

seq1  GGACTTGCAGCAGTTGTGTACTC-TGCTCTATGCCCAGCTGATGCTTTTC  1098
       ||| |||||||||||||||||| |||||| |||| |||||| |||||| 
seq2  AGAC-TGCAGCAGTTGTGTACTCTTGCTCT-TGCCAAGCTGAGGCTTTT-  1092

seq1  TCTGGGACCTCAAAATCCCCTCTACAC-AAGAGACTCACCTGGCA  1142
      | ||||||||  |||||||| || ||| |||||||||  ||||||
seq2  TTTGGGACCTTCAAATCCCC-CT-CACTAAGAGACTCTACTGGCA  1135