BAC Information

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BAC

Clone NameB6Ng01-053H11
Chromosome4 (Build37)
Map Location 135,441,675 - 135,560,617
singlet/doubletdoublet
Overlap geneCnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3
Upstream geneRhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2
Downstream geneRpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053H11.bB6Ng01-053H11.g
ACCDH876505DH876506
length1,165529
definitionDH876505|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H11, 5' end.DH876506|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,559,458 - 135,560,617)(135,441,675 - 135,442,209)
sequence
gaattcctaccaggagtgaatgatttaaagcactgtagtgctgtggaact
tgcttttgtttgaaaggaaaggtgctgatgtgcccagaggaacggtattg
tgctgtggccagcagagaactctgtgcagcctccgccttctgagtgttgg
ccttgggaagggtggatggtcaccctggtcccagccaaccagttcaggag
gaagattccctatttctaggtcgcataagggcaaggttagagctaggagg
atagtgccagcttcttccttcctgtcagaaaacgtggaagaggactcaat
tggctatgagccaggtgaaagacactatgaacttgaggggacagacagca
ctggcactgtgcctatcctgttttagcaccctcaagacctcaggctagtg
aagactcccaaggcagtccaggaaacctgcacagataaagctaggcccac
cttactgtgcattgctatgctgggtccctgttgccatgggacacaggtat
tgctaagtaaaacattgtttctcttggttgcttgtttcaccataccacct
ctcagcctgacctcaaactctaacatcaggtctcttagctgacgttaaag
ggacatttgtactaggagccaggcccctgctgtctagaacagcctccttt
ctaggtgttgaccacctcagatttatgccttagctgtgtttcaagacttc
cctttgccattttttcctattgcaggttcgattgtgtatgatttaattcc
ctttaggaatttgtaggcctagggaaagaaaggacatgcatttgcccgtc
ccaatgtcagcatctggtttggcacacaaagatttctgaggcacccagtt
tacctagagccagatttctagcccttcagagtgtctgtgtcagggatagg
actgctgagaacagtgagggcccagtgagcagctgtctccacattccctc
accccatgcacaatgggcacaaagcagacacagtcatgttcaacttttgg
tcacatttgtgaagactctggcatgttttcctgggctaactacatacagt
ccaacatgatggacttaggcctttacataacagatgacactatcagaaat
agccctttgcggatcttggcgttcaagggctctctcaagggctcaccctt
tctctcgtgtttttg
tgtgacatgtggtataaagattaaatgagaatatgtggcaagcaggactc
tgcgcctgattcacgctgagggctgttccacaccagagagatccagccac
cgaagccaatgagtcgagtggccttgtgacgcagctccgccggggtttcc
ctgtgtccgtgcagtgtaacaaaggttacactggtgtggtccctcccaga
aagggttgagtatctggagaggaacctaagacgcaagagcacacagcaaa
gcaaggcacagtcagacataggactttgcttccccactgtcccctcatcc
atctgggtcttaactctacagtccctgctggccccgaagtcactgtggag
atcaggctgtcgagaactcagagattcaaggcatataccaccatgcctag
cctgttactgattggtgtgtgtgtgtgtgtgtgtgatgtgtgttcatgtg
tgtgtgacatcaggtgtcacttttttttcagttctcttgagaaagaactg
tccctgaacatagagcttgctgacttcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_135559458_135560617
seq2: B6Ng01-053H11.b_42_1206 (reverse)

seq1  CCAAAAC---AGAGAAA--GTGAGCCCCT--GAGAGCCCTTGGAACGCCA  43
      | |||||   |||||||  |||||||| |  |||||||||| ||||||||
seq2  CAAAAACACGAGAGAAAGGGTGAGCCCTTGAGAGAGCCCTT-GAACGCCA  49

seq1  AGGATCGCAAAGGGCTA-TTCTGTATGTGTCATCTG-TATGTAAAGGGCT  91
      ||   |||||||||||| |||||   |||||||||| |||||||||| ||
seq2  AGATCCGCAAAGGGCTATTTCTGATAGTGTCATCTGTTATGTAAAGGCCT  99

seq1  -AGTCCATCATGTGTGACCTGTATGTAGTGTAGCACA-GAAAACATTGCA  139
       |||||||||||| ||  ||||||||||| |||| || ||||||| ||| 
seq2  AAGTCCATCATGT-TGGACTGTATGTAGT-TAGCCCAGGAAAACA-TGCC  146

seq1  CGAGTCTTCACAAATGTGACCAAAAGTTGAACATGACTGTGTCTGCTTTG  189
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTCACAAATGTGACCAAAAGTTGAACATGACTGTGTCTGCTTTG  196

seq1  TGGCCATTGTGCATGGGGTGAGGGACTGTGGAGACAGCTGCTCACTGGGC  239
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCCCATTGTGCATGGGGTGAGGGAATGTGGAGACAGCTGCTCACTGGGC  246

seq1  CCTCACTGTTCTCAGCAGTCCTATCCCTGACACAGACACTCTTGAAGGGC  289
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTCACTGTTCTCAGCAGTCCTATCCCTGACACAGACACTC-TGAAGGGC  295

seq1  TAGAAAATCTGGCTCTAGGTAAACTGGGTGCCTCAGAAATCTTTGTGTGC  339
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAG-AAATCTGGCTCTAGGTAAACTGGGTGCCTCAGAAATCTTTGTGTGC  344

seq1  CAAACCAGATGCTGACATTGGGACGGGCAAATGCATGTCCTTTCTTTCCC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGATGCTGACATTGGGACGGGCAAATGCATGTCCTTTCTTTCCC  394

seq1  TAGGCCTACAAATTCCTAAAGGGAATTAAATCATACACAATCGAACCTGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTACAAATTCCTAAAGGGAATTAAATCATACACAATCGAACCTGC  444

seq1  AATAGGAAAAAATGGCAAAGGGAAGTCTTGAAACACAGCTAAGGCATAAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAAAAATGGCAAAGGGAAGTCTTGAAACACAGCTAAGGCATAAA  494

seq1  TCTGAGGTGGTCAACACCTAGAAAGGAGGCTGTTCTAGACAGCAGGGGCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTGGTCAACACCTAGAAAGGAGGCTGTTCTAGACAGCAGGGGCC  544

seq1  TGGCTCCTAGTACAAATGTCCCTTTAACGTCAGCTAAGAGACCTGATGTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTAGTACAAATGTCCCTTTAACGTCAGCTAAGAGACCTGATGTT  594

seq1  AGAGTTTGAGGTCAGGCTGAGAGGTGGTATGGTGAAACAAGCAACCAAGA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGAGGTCAGGCTGAGAGGTGGTATGGTGAAACAAGCAACCAAGA  644

seq1  GAAACAATGTTTTACTTAGCAATACCTGTGTCCCATGGCAACAGGGACCC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATGTTTTACTTAGCAATACCTGTGTCCCATGGCAACAGGGACCC  694

seq1  AGCATAGCAATGCACAGTAAGGTGGGCCTAGCTTTATCTGTGCAGGTTTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGCAATGCACAGTAAGGTGGGCCTAGCTTTATCTGTGCAGGTTTC  744

seq1  CTGGACTGCCTTGGGAGTCTTCACTAGCCTGAGGTCTTGAGGGTGCTAAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGCCTTGGGAGTCTTCACTAGCCTGAGGTCTTGAGGGTGCTAAA  794

seq1  ACAGGATAGGCACAGTGCCAGTGCTGTCTGTCCCCTCAAGTTCATAGTGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATAGGCACAGTGCCAGTGCTGTCTGTCCCCTCAAGTTCATAGTGT  844

seq1  CTTTCACCTGGCTCATAGCCAATTGAGTCCTCTTCCACGTTTTCTGACAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCTGGCTCATAGCCAATTGAGTCCTCTTCCACGTTTTCTGACAG  894

seq1  GAAGGAAGAAGCTGGCACTATCCTCCTAGCTCTAACCTTGCCCTTATGCG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAAGCTGGCACTATCCTCCTAGCTCTAACCTTGCCCTTATGCG  944

seq1  ACCTAGAAATAGGGAATCTTCCTCCTGAACTGGTTGGCTGGGACCAGGGT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAAATAGGGAATCTTCCTCCTGAACTGGTTGGCTGGGACCAGGGT  994

seq1  GACCATCCACCCTTCCCAAGGCCAACACTCAGAAGGCGGAGGCTGCACAG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCCACCCTTCCCAAGGCCAACACTCAGAAGGCGGAGGCTGCACAG  1044

seq1  AGTTCTCTGCTGGCCACAGCACAATACCGTTCCTCTGGGCACATCAGCAC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTGCTGGCCACAGCACAATACCGTTCCTCTGGGCACATCAGCAC  1094

seq1  CTTTCCTTTCAAACAAAAGCAAGTTCCACAGCACTACAGTGCTTTAAATC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCAAACAAAAGCAAGTTCCACAGCACTACAGTGCTTTAAATC  1144

seq1  ATTCACTCCTGGTAGGAATTC  1160
      |||||||||||||||||||||
seq2  ATTCACTCCTGGTAGGAATTC  1165

seq1: chr4_135441675_135442209
seq2: B6Ng01-053H11.g_67_601

seq1  GAATTCTGTGACATGTGGTATAAAGATTAAATGAGAATATGTGGCAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGACATGTGGTATAAAGATTAAATGAGAATATGTGGCAAGCA  50

seq1  GGACTCTGCGCCTGATTCACGCTGAGGGCTGTTCCACACCAGAGAGATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTGCGCCTGATTCACGCTGAGGGCTGTTCCACACCAGAGAGATCC  100

seq1  AGCCACCGAAGCCAATGAGTCGAGTGGCCTTGTGACGCAGCTCCGCCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCGAAGCCAATGAGTCGAGTGGCCTTGTGACGCAGCTCCGCCGGG  150

seq1  GTTTCCCTGTGTCCGTGCAGTGTAACAAAGGTTACACTGGTGTGGTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTGTGTCCGTGCAGTGTAACAAAGGTTACACTGGTGTGGTCCCT  200

seq1  CCCAGAAAGGGTTGAGTATCTGGAGAGGAACCTAAGACGCAAGAGCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAAGGGTTGAGTATCTGGAGAGGAACCTAAGACGCAAGAGCACAC  250

seq1  AGCAAAGCAAGGCACAGTCAGACATAGGACTTTGCTTCCCCACTGTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCAAGGCACAGTCAGACATAGGACTTTGCTTCCCCACTGTCCCC  300

seq1  TCATCCATCTGGGTCTTAACTCTACAGTCCCTGCTGGCCCCGAAGTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATCTGGGTCTTAACTCTACAGTCCCTGCTGGCCCCGAAGTCACT  350

seq1  GTGGAGATCAGGCTGTCGAGAACTCAGAGATTCAAGGCATATACCACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGATCAGGCTGTCGAGAACTCAGAGATTCAAGGCATATACCACCAT  400

seq1  GCCTAGCCTGTTACTGATTGGTGTGTGTGTGTGTGTGTGTGATGTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCCTGTTACTGATTGGTGTGTGTGTGTGTGTGTGTGATGTGTGTT  450

seq1  CATGTGTGTGTGACATCAGGTGTCACTTTCTATTCAGTTCTCTTGAGAAA  500
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  CATGTGTGTGTGACATCAGGTGTCACTTTTTTTTCAGTTCTCTTGAGAAA  500

seq1  GAACTGTCCCTGAACATAGAGCTTGCTGACTTCAC  535
      |||||||||||||||||||||||||||||||||||
seq2  GAACTGTCCCTGAACATAGAGCTTGCTGACTTCAC  535