BAC Information

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BAC

Clone NameB6Ng01-054B07
Chromosome17 (Build37)4 (Build37)
Map Location 5,991,743 - 5,992,84245,204,476 - 45,204,991
singlet/doubletsingletsinglet
Overlap geneSynj2
Upstream geneArid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14, 3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951
Downstream geneSerac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054B07.bB6Ng01-054B07.g
ACCDH876933DH876934
length1,077949
definitionDH876933|Mus musculus domesticus DNA, BAC clone: B6Ng01-054B07, 5' end.DH876934|Mus musculus domesticus DNA, BAC clone: B6Ng01-054B07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,991,743 - 5,992,842)(45,204,476 - 45,204,991)
sequence
gaattcaatagaataacgggagaagaaacttatttaaaaaaaaaaactac
atcagctaaagcttcattctggaaggatgttagggcttggggacctgatc
atgtgtgacagcagttgctgttagtccctatggagaagggccatctgtaa
tacctccctaggttcttttctggcttctgctctcatcctggatgttaaag
tcctaacctcctgaaagatgctgtctcgcatctgttgttttgtttttttt
tttttttgctctgacttgctccctgagggtagtgccaccttgcagaatag
cacctgggatcagctgcaaagaaggaaagctatagggagggaggcacggg
tcctctctgagcagcaggcgccctgtgtgttcctgtaggcgcagcctggc
acacacagtgtggctgtaagaggcacccttccagggcaccagttgaagtc
agcacacatgtgcacaccttcccccagcacaggagaaactctgcatgctc
acttaacagtggctcaaacccgtgtgggggcccagtttgcaggagcgctg
tctcctctcagaggtgcaaagatggaggctcctcatgggagttagaggga
agttggggcaggagcctgcaaaagatctgtgggtaaaattactatctcag
gggagagttgcttgccctcctgaatgttgacagtgctattaaataactat
ttttatggttgaaaaaggagagaatacttcctcccaccatgaaagccatt
ttcacttttcttgctcatgtcttcatggtgacaaagacttccaaggtcat
gtccaccttctttacctccacacctttatctggtatcactacccctcacc
ctcggtatgttctgatctgggacagagttctggtgtttttgagcaggtca
agacaccacagtagcaatgttgatattgcatggctcccacaaagcctgac
ttggtaccagaaccagattcagagatcatcttgggtcagagatctcagcc
agtctgaggagagggccattattgtctggtggtggtagttccaatgttag
tttgacagttggaacacttatggtctt
gaattctcactttttatgctacatgtttttttttttttgcttttgttttt
tgtttatcttgtttggttgggtggtgtactggctagttttgtgtcagctt
gacacagctggagttaccacagagaaaggagcttcagttgaggaaatgcc
tccatgagatccagctgtaaggcatcttctcaattagtgatcaagggggg
aaaggccccttgtgggtggaaccatctctgggctggtagtcttaggtttt
ataagagagcaggctgagcaagtcagaagcagccagccagtaaggaacat
ccctccatggcctctgaatcagctcctgctcccagacctgcttgagttcc
agtcctgacttccttggtgatgaacagcagtatggaagtgtaagccgaat
aaaccctttcctccccaacttgcttcttggtcatgatgtttgtgcaggaa
tagaaaccctgactaagacaaattggtatcaggagtggggtattcctgtg
acaacctgaccatgttttggggaggactgtggaaggactttggaactttg
ggcttgaagatccattcgctgttaagagctctgtcagatgttgtgtagga
gcttggaagataatgttgagaacagtgcagaagatggaggtctggtttgt
gaaatttcaaagggaaaattgaagattcttttcagggccatttctctgtt
gattgtgaagattctgtggttctggttagctggggctgaagaatcagctg
tgattaacaagataccagaactactaaagcaaaaacttggcattactggg
actattaatgctggttagctggagctaagaaattggcagtgattaagaag
agaccagcatcattgagtgacatcttctgggaagtgttttctgaaagcac
aagaggctgtgttccagagatagccaagtttgtactcctgatgcagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_5991743_5992842
seq2: B6Ng01-054B07.b_45_1121

seq1  GAATTCAATAGAATAACGGGAGAAGAAACTTATTTAAAAAAAAAAACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGAATAACGGGAGAAGAAACTTATTTAAAAAAAAAAACTAC  50

seq1  ATCAGCTAAAGCTTCATTCTGGAAGGATGTTAGGGCTTGGGGACCTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTAAAGCTTCATTCTGGAAGGATGTTAGGGCTTGGGGACCTGATC  100

seq1  ATGTGTGACAGCAGTTGCTGTTAGTCCCTATGGAGAAGGGCCATCTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGACAGCAGTTGCTGTTAGTCCCTATGGAGAAGGGCCATCTGTAA  150

seq1  TACCTCCCTAGGTTCTTTTCTGGCTTCTGCTCTCATCCTGGATGTTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCCTAGGTTCTTTTCTGGCTTCTGCTCTCATCCTGGATGTTAAAG  200

seq1  TCCTAACCTCCTGAAAGATGCTGTCTCGCATCTGTTGTTTTGTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACCTCCTGAAAGATGCTGTCTCGCATCTGTTGTTTTGTTTTTTTT  250

seq1  TTTTTTTGCTCTGACTTGCTCCCTGAGGGTAGTGCCACCTTGCAGAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCTCTGACTTGCTCCCTGAGGGTAGTGCCACCTTGCAGAATAG  300

seq1  CACCTGGGATCAGCTGCAAAGAAGGAAAGCTATAGGGAGGGAGGCACGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGGATCAGCTGCAAAGAAGGAAAGCTATAGGGAGGGAGGCACGGG  350

seq1  TCCTCTCTGAGCAGCAGGCGCCCTGTGTGTTCCTGTAGGCGCAGCCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTGAGCAGCAGGCGCCCTGTGTGTTCCTGTAGGCGCAGCCTGGC  400

seq1  ACACACAGTGTGGCTGTAAGAGGCACCCTTCCAGGGCACCAGTTGAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGTGTGGCTGTAAGAGGCACCCTTCCAGGGCACCAGTTGAAGTC  450

seq1  AGCACACATGTGCACACCTTCCCCCAGCACAGGAGAAACTCTGCATGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATGTGCACACCTTCCCCCAGCACAGGAGAAACTCTGCATGCTC  500

seq1  ACTTAACAGTGGCTCAAACCCGTGTGGGGGCCCAGTTTGCAGGAGCGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACAGTGGCTCAAACCCGTGTGGGGGCCCAGTTTGCAGGAGCGCTG  550

seq1  TCTCCTCTCAGAGGTGCAAAGATGGAGGCTCCTCATGGGAGTTAGAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTCAGAGGTGCAAAGATGGAGGCTCCTCATGGGAGTTAGAGGGA  600

seq1  AGTTGGGGCAGGAGCCTGCAAAAGATCTGTGGGTAAAATTACTATCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGCAGGAGCCTGCAAAAGATCTGTGGGTAAAATTACTATCTCAG  650

seq1  GGGAGAGTTGCTTGCCCTCCTGAATGTTGACAGTGCTATTAAATAACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGTTGCTTGCCCTCCTGAATGTTGACAGTGCTATTAAATAACTAT  700

seq1  TTTTATGGTTGAAAAAGGAGAGAATACTTCCTCCCACCATGAAAGCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGTTGAAAAAGGAGAGAATACTTCCTCCCACCATGAAAGCCATT  750

seq1  TTCACTTTTCTTGCTCATGTCTTCATGGTGACAAAGACTTCCAAGGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTTCTTGCTCATGTCTTCATGGTGACAAAGACTTCCAAGGTCAT  800

seq1  GTCCACCTTCTTTACCTCCACACCTTTATCTGGTATCACTACCCCTCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCTTCTTTACCTCCACACCTTTATCTGGTATCACTACCCCTCACC  850

seq1  CTCGGTATGTTCTGATCTGGGACAGAGTTCTGGTGTTTTTGAGCAGGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTATGTTCTGATCTGGGACAGAGTTCTGGTGTTTTTGAGCAGGTCA  900

seq1  AGACACCACAGGTAGCAATGTTGATATTGCATGGCTCCCACAAAGCCTGA  950
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  AGACACCACA-GTAGCAATGTTGATATTGCATGGCTCCCACAAAGCCTG-  948

seq1  ACTTGGTACCAGAACCAGATTCCAGAGATCATCTTTGGGTCAAGAAGGAA  1000
      ||||||||||||||||||||| ||||||||||| ||||||||     || 
seq2  ACTTGGTACCAGAACCAGATT-CAGAGATCATC-TTGGGTCA-----GAG  991

seq1  TCCTCAGCCCAGTCTGAGGGAAGAGGGCCATTTATTTGGTCCTGGTGGTG  1050
        ||||| |||||||||||  ||||||||| |||||  || |||||||||
seq2  ATCTCAG-CCAGTCTGAGG--AGAGGGCCA-TTATT--GT-CTGGTGGTG  1034

seq1  GTAGTTCCCAAATGTTTAGGTTTTGACCAGTTGGGAAACAC-TATGGTCT  1099
      ||||||||  |||| ||||  ||||| |||||||  ||||| ||||||||
seq2  GTAGTTCC--AATG-TTAG--TTTGA-CAGTTGG--AACACTTATGGTCT  1076

seq1  T  1100
      |
seq2  T  1077

seq1: chr4_45204476_45204991
seq2: B6Ng01-054B07.g_89_520

seq1  TGTTTTTTTTTTTTTGTTTTGTATATGGGGTAGAAAGAAATTGGTTGTTC  50
      |||||||||||||||| ||                         ||||  
seq2  TGTTTTTTTTTTTTTGCTT-------------------------TTGT--  23

seq1  CTTTCAGAGGCTCATTTTTGGAGGGGTTTCTGCCTTAGTTTTCCACAAAA  100
                    |||||      |||| |  ||| ||||         
seq2  --------------TTTTT------GTTTAT--CTT-GTTT---------  41

seq1  GCTGTGTAATAATAAAAGTATGAACATGCCTTGTGTACTGGCTAGTTTTG  150
                       ||       ||  | ||||||||||||||||||
seq2  ----------------GGT-------TGGGTGGTGTACTGGCTAGTTTTG  68

seq1  TGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGA  200
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTCAGCTTGACACAGCTGGAGTTACCACAGAGAAAGGAGCTTCAGTTGA  118

seq1  GGAAATGCCTCCATGAGATCCAGCTGTAAGGCATTTTCTCAATTAGTGAT  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGAAATGCCTCCATGAGATCCAGCTGTAAGGCATCTTCTCAATTAGTGAT  168

seq1  CAA-GGGGGAAAGGTCCCTTGTGGGTGGGACCATCTTTGGGCTGGTAGTC  299
      ||| |||||||||| ||||||||||||| ||||||| |||||||||||||
seq2  CAAGGGGGGAAAGGCCCCTTGTGGGTGGAACCATCTCTGGGCTGGTAGTC  218

seq1  TTGGGTTCTATAAGAGAGCAGGCTGAGCA--------------AGCCAGT  335
      || |||| |||||||||||||||||||||              |||||||
seq2  TTAGGTTTTATAAGAGAGCAGGCTGAGCAAGTCAGAAGCAGCCAGCCAGT  268

seq1  AAGTAACATCCCTCCATGGCCTCTGCATCAGCCCTGCATCCTGTTTCCTG  385
      ||| ||||||||||||||||||||| ||||||      ||||| | || |
seq2  AAGGAACATCCCTCCATGGCCTCTGAATCAGC------TCCTGCTCCCAG  312

seq1  ACCTGCTTGAGTTCCAGCCCTGACTTCCTTGGTGATGAACAGCAGCGTGG  435
      ||||||||||||||||| |||||||||||||||||||||||||||  |||
seq2  ACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAACAGCAGTATGG  362

seq1  AAGTGGCTGAGCCTTGCTTGCTGAATAAACCCTTTCCTCCCCAACTTGCT  485
      |||||  | ||||         ||||||||||||||||||||||||||||
seq2  AAGTG--TAAGCC---------GAATAAACCCTTTCCTCCCCAACTTGCT  401

seq1  TCTTGGTCATGATGTTTGTGCAGGAATAGAA  516
      |||||||||||||||||||||||||||||||
seq2  TCTTGGTCATGATGTTTGTGCAGGAATAGAA  432