BAC Information

Click to search

BAC

Clone NameB6Ng01-054G22
Chromosome4 (Build37)
Map Location 78,303,871 - 78,354,929
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054G22.bB6Ng01-054G22.g
ACCDH877177DH877178
length1,255931
definitionDH877177|Mus musculus domesticus DNA, BAC clone: B6Ng01-054G22, 5' end.DH877178|Mus musculus domesticus DNA, BAC clone: B6Ng01-054G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,353,678 - 78,354,929)(78,303,871 - 78,304,685)
sequence
gaattcttcatctgttatgagcaacaactgaaaggcagagctggtactcc
tttcaaccaatgaagcctatcatatgcctagctttttcaatgatgagtca
gctgggggccttatgggaagacaatgcctggctattcagggttcacaact
gttacttgctccagtttcttttgtcatcccaatgaaacatatcctttcag
atccaaccagcaaggctcagaaattcaaaatatcaatattactctacttc
acggaccatatttcaaagatacacctcactagtgcagccatgaagacaag
ggctcaaagtagttccagtgacataggaagctgtcatcatcaagagggta
agatctgaatacagagaggccaaaagttaaacttgtgggtaaatacatat
ctaatcaagaacagaagccatcatagttccaagtatcatcaagacagaag
ggttcactgtacaacttgcagacctttggaagaacactctttgcagcaat
ggtaacaatgtcctccaacctgcaaatgccctgcccatagtgtgcaagcc
agaggtatgataatggtatgttgtatacagtaaaaattagtgttgggaac
tggctaaacattgataccagatgctacatgcccacctcttaaacatggga
attgagaaacttgaaggaaaaacacccaagtgctcaaaacattatcttta
gacttcagaaccccagcactggacccttgactctctttttttctttctat
cctaacaccacaatagtattttatttctgcctagtgtactcctctgttgc
ttctagggcccttcttcaatgagaatttttgtagtgtttctgaaacatgg
atagctgtaacaaactattaaatttcacccaacatgaaatcagtgcatct
agcaagcaatccacatcaaggtctgatcacagctgtggatcctcctatct
tgttggtacttatataggccaattgatatttcttactatagacttttttt
taatcctccactttataattagggcagtaaaaaaagacatcattgagtat
ttatagattaaagatttctacatgggtgaaagaactcaattctaggttac
tttttctgacctcttttgtaagataaaagaacaaattggggccttcttat
attgggcctgactctgactggctgactccatttggagttactcatcatgt
gaagtgacttctctgggtcacctctctctatataggcatctccatgaaga
aggag
gaattcaggaggaggagcaaaaatggagcagagactaaagcaaaggccat
ccaaacagctccccaacttgggatccatcttatgtgcaggcaccaaaccc
tgacactattactgatgccatgtggttgcagaaaggatcctagcatggaa
gacctctgagatgctctactagcagctgactgagacacacacagatacat
acaaccaatgattggactgaagtcggcgggggtgcatggaagagttaggg
aaaggaataaaggaacttaaggggattgcaactccttaggaagaactaga
gtatcaactaacccagacctccttgagctccttgagtccaagccaccaac
caaagagtatccatggtctggttttttgtccagggtacagatgtagcaga
ggactgctttgtctggccttagttgggaaggatgattttagtcttgtata
aacttgatgccccagggaaggaggatgactgcagggtgacatgggagtgt
gtgggtgggggaacactctctcagaatcaaagggggagaggatagggtat
agaactcatggaaggggggccaggaacaggggcaacatttggaatgaaaa
taaataaaatagatttaaaaaagaactatatttgaacaaaatcttgccat
taacatcaaataagtactgacatttaaaaaaaaaaaaaacactttttttt
ttttttttttttgtggaagtaagcaccaagcaatgttcttgccctattgg
acttaagttgacttcaaaagaatattgagggaaattgttcaccagtttcc
aatgttgatattcctattaaatgtaatcttaagactgggtcatttgagta
ctcaggtatattcctttcggactctggttcgaataccatctttcactttg
ttccatgcaggttacctcttgcgcccactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_78353678_78354929
seq2: B6Ng01-054G22.b_47_1301 (reverse)

seq1  CTCCTTCTTCATG--GATGCTAATGAAGA---AGTGGACCCAG-GAAGTC  44
      |||||||||||||  |||||  ||  |||   ||  ||||||| ||||||
seq2  CTCCTTCTTCATGGAGATGCCTATATAGAGAGAGGTGACCCAGAGAAGTC  50

seq1  ATATCCACATGATGAAGGTACATTTTCAAATGAAGCTCAGACAAGTACAG  94
      |  | ||||||||||  ||  |  | |||||| || |||| | ||| |||
seq2  A-CTTCACATGATGA--GT--AACTCCAAATGGAG-TCAG-CCAGT-CAG  92

seq1  AGACAAGCACAATAT-AGAAGTGCCCCAATATG-TCTTTTATCTTACAGA  142
      || || || |||||| ||||| |||||||| || |||||||||||||| |
seq2  AGTCAGGCCCAATATAAGAAG-GCCCCAATTTGTTCTTTTATCTTACAAA  141

seq1  GGA-GTCAGAAAAGTTACCCTAGAATTGAG-TCTGTCA-CCATGTAGATA  189
       || |||||||||  || |||||||||||| ||| ||| ||||||||| |
seq2  AGAGGTCAGAAAAAGTAACCTAGAATTGAGTTCTTTCACCCATGTAGAAA  191

seq1  TCTTTAATCTAT-AATACTCAATGATGTCTTTTTTTACTGCCCTAAATAT  238
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  TCTTTAATCTATAAATACTCAATGATGTCTTTTTTTACTGCCCTAATTAT  241

seq1  AAAGTGGAGGATTAAAAAAAAGTCTATAGTAAGAAATATCAATTGGCCTA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAGGATTAAAAAAAAGTCTATAGTAAGAAATATCAATTGGCCTA  291

seq1  TATAAGTACCAACAAGATAGGAGGATCCACAGCTGTGATCAGACCTTGAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTACCAACAAGATAGGAGGATCCACAGCTGTGATCAGACCTTGAT  341

seq1  GTGGATTGCTTGCTAGATGCACTGATTTCATGTTGGGTGAAATTTAATAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTGCTTGCTAGATGCACTGATTTCATGTTGGGTGAAATTTAATAG  391

seq1  TTTGTTACAGCTATCCATGTTTCAGAAACACTACAAAAATTCTCATTGAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTACAGCTATCCATGTTTCAGAAACACTACAAAAATTCTCATTGAA  441

seq1  GAAGGGCCCTAGAAGCAACAGAGGAGTACACTAGGCAGAAATAAAATACT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCCCTAGAAGCAACAGAGGAGTACACTAGGCAGAAATAAAATACT  491

seq1  ATTGTGGTGTTAGGATAGAAAGAAAAAAAGAGAGTCAAGGGTCCAGTGCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGTGTTAGGATAGAAAGAAAAAAAGAGAGTCAAGGGTCCAGTGCT  541

seq1  GGGGTTCTGAAGTCTAAAGATAATGTTTTGAGCACTTGGGTGTTTTTCCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCTGAAGTCTAAAGATAATGTTTTGAGCACTTGGGTGTTTTTCCT  591

seq1  TCAAGTTTCTCAATTCCCATGTTTAAGAGGTGGGCATGTAGCATCTGGTA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTCTCAATTCCCATGTTTAAGAGGTGGGCATGTAGCATCTGGTA  641

seq1  TCAATGTTTAGCCAGTTCCCAACACTAATTTTTACTGTATACAACATACC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTTAGCCAGTTCCCAACACTAATTTTTACTGTATACAACATACC  691

seq1  ATTATCATACCTCTGGCTTGCACACTATGGGCAGGGCATTTGCAGGTTGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATACCTCTGGCTTGCACACTATGGGCAGGGCATTTGCAGGTTGG  741

seq1  AGGACATTGTTACCATTGCTGCAAAGAGTGTTCTTCCAAAGGTCTGCAAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTGTTACCATTGCTGCAAAGAGTGTTCTTCCAAAGGTCTGCAAG  791

seq1  TTGTACAGTGAACCCTTCTGTCTTGATGATACTTGGAACTATGATGGCTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGTGAACCCTTCTGTCTTGATGATACTTGGAACTATGATGGCTT  841

seq1  CTGTTCTTGATTAGATATGTATTTACCCACAAGTTTAACTTTTGGCCTCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTGATTAGATATGTATTTACCCACAAGTTTAACTTTTGGCCTCT  891

seq1  CTGTATTCAGATCTTACCCTCTTGATGATGACAGCTTCCTATGTCACTGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTCAGATCTTACCCTCTTGATGATGACAGCTTCCTATGTCACTGG  941

seq1  AACTACTTTGAGCCCTTGTCTTCATGGCTGCACTAGTGAGGTGTATCTTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTTTGAGCCCTTGTCTTCATGGCTGCACTAGTGAGGTGTATCTTT  991

seq1  GAAATATGGTCCGTGAAGTAGAGTAATATTGATATTTTGAATTTCTGAGC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGGTCCGTGAAGTAGAGTAATATTGATATTTTGAATTTCTGAGC  1041

seq1  CTTGCTGGTTGGATCTGAAAGGATATGTTTCATTGGGATGACAAAAGAAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGTTGGATCTGAAAGGATATGTTTCATTGGGATGACAAAAGAAA  1091

seq1  CTGGAGCAAGTAACAGTTGTGAACCCTGAATAGCCAGGCATTGTCTTCCC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAAGTAACAGTTGTGAACCCTGAATAGCCAGGCATTGTCTTCCC  1141

seq1  ATAAGGCCCCCAGCTGACTCATCATTGAAAAAGCTAGGCATATGATAGGC  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCCCCCAGCTGACTCATCATTGAAAAAGCTAGGCATATGATAGGC  1191

seq1  TTCATTGGTTGAAAGGAGTACCAGCTCTGCCTTTCAGTTGTTGCTCATAA  1238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGGTTGAAAGGAGTACCAGCTCTGCCTTTCAGTTGTTGCTCATAA  1241

seq1  CAGATGAAGAATTC  1252
      ||||||||||||||
seq2  CAGATGAAGAATTC  1255

seq1: chr4_78303871_78304685
seq2: B6Ng01-054G22.g_192_995

seq1  GCAGAAAGGATCCTAGCATGGAAGACCTCTGAGATGCTCTACTAGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGGATCCTAGCATGGAAGACCTCTGAGATGCTCTACTAGCAGCT  50

seq1  GACTGAGACACACACAGATACATACAACCAATGATTGGACTGAAGTCGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGACACACACAGATACATACAACCAATGATTGGACTGAAGTCGGC  100

seq1  GGGGGTGCATGGAAGAGTTAGGGAAAGGAATAAAGGAACTTAAGGGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGCATGGAAGAGTTAGGGAAAGGAATAAAGGAACTTAAGGGGATT  150

seq1  GCAACTCCTTAGGAAGAACTAGAGTATCAACTAACCCAGACCTCCTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCCTTAGGAAGAACTAGAGTATCAACTAACCCAGACCTCCTTGAG  200

seq1  CTCCTTGAGTCCAAGCCACCAACCAAAGAGTATCCATGGTCTGGTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGAGTCCAAGCCACCAACCAAAGAGTATCCATGGTCTGGTTTTTT  250

seq1  GTCCAGGGTACAGATGTAGCAGAGGACTGCTTTGTCTGGCCTTAGTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGGTACAGATGTAGCAGAGGACTGCTTTGTCTGGCCTTAGTTGGG  300

seq1  AAGGATGATTTTAGTCTTGTATAAACTTGATGCCCCAGGGAAGGAGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGATTTTAGTCTTGTATAAACTTGATGCCCCAGGGAAGGAGGATG  350

seq1  ACTGCAGGGTGACATGGGAGTGTGTGGGTGGGGGAACACTCTCTCAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGGTGACATGGGAGTGTGTGGGTGGGGGAACACTCTCTCAGAAT  400

seq1  CAAAGGGGGAGAGGATAGGGTATAGAACTCATGGAAGGGGGGCCAGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGGGAGAGGATAGGGTATAGAACTCATGGAAGGGGGGCCAGGAAC  450

seq1  AGGGGCAACATTTGGAATGAAAATAAATAAAATAGATTTAAAAAAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAACATTTGGAATGAAAATAAATAAAATAGATTTAAAAAAGAACT  500

seq1  ATATTTGAACAAAATCTTGCCATTAACATCAAATAAGTACTGACATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAACAAAATCTTGCCATTAACATCAAATAAGTACTGACATTTAA  550

seq1  AAAAAAAAAAAACACTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAGTAAG  600
      ||||||||||||||||||||||||||||||||||| |    | |||||||
seq2  AAAAAAAAAAAACACTTTTTTTTTTTTTTTTTTTTGT----GGAAGTAAG  596

seq1  CACCAAGCATTGTTCTTGCCCTATTGGACTTAAGTTGAC-TCAAAAGAAT  649
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  CACCAAGCAATGTTCTTGCCCTATTGGACTTAAGTTGACTTCAAAAGAAT  646

seq1  ATTGAGGGAAATTGTTCACCAGTTTCCAATGTTCAATATTTCTTATTAAA  699
      |||||||||||||||||||||||||||||||||  ||| ||| |||||||
seq2  ATTGAGGGAAATTGTTCACCAGTTTCCAATGTT-GATA-TTCCTATTAAA  694

seq1  TGTAATCTTAAGACTGGGTCATTTGAAGTACTCAGTTATATTCTTTTCTG  749
      ||||||||||||||||||||||||| ||||||||| ||||||| |||| |
seq2  TGTAATCTTAAGACTGGGTCATTTG-AGTACTCAGGTATATTCCTTTCGG  743

seq1  ACTCTTGGTTTCAGAATACCATCTTTTCACTTTGTTCCATTGCAGGTTAC  799
      |||| |||||   |||||||||| ||||||||||||||| ||||||||||
seq2  ACTC-TGGTT--CGAATACCATC-TTTCACTTTGTTCCA-TGCAGGTTAC  788

seq1  CTCTTGCGCACACTCA  815
      ||||||||| ||||||
seq2  CTCTTGCGCCCACTCA  804