BAC Information

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BAC

Clone NameB6Ng01-054J23
Chromosome4 (Build37)
Map Location 61,620,400 - 61,621,451
singlet/doubletsinglet
Overlap geneLOC100039305
Upstream geneLOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295
Downstream geneLOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054J23.bB6Ng01-054J23.g
ACCDH877317DH877318
length1,0531,218
definitionDH877317|Mus musculus domesticus DNA, BAC clone: B6Ng01-054J23, 5' end.DH877318|Mus musculus domesticus DNA, BAC clone: B6Ng01-054J23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccaagacatggatgtactcgacaaaaactctcatgctgccatg
ttcttctatcttttctcttttgtcagtggccagcataatagtataccatt
ccccattaatctgtaatagataagcaaatggttaagggagaaggagcagg
gataccacatgcatatttccacttgaactccagcctatgggttagggcct
gagcatacacacgggtagatctcatgccagttgtcacaatacttaccata
ctctccctgcctctcagtgagaacagaggtccccaaatgttgttatatct
gaatatcttctggtcttacttcaaggtctggagccattcattcatctaat
aaattggggcactatactcatccactcaaagggcctacttggctaaaaca
tttccccaaagcacattctgagtgaagttacaattcactgatcatacctt
ttctacattaaagttcctttccatagaactagcttcttctgcatggacac
agactagggtcagtcccaaacacagcagcagcaccagcagcttcattttg
gtagatagtaaaattttctgcctgtcagaaccacgtctttctggtgatgg
tgcctacactccacaccccagctcctttgcttgtacttatatactctctg
ggttcggtgtttttttgttttttgttgttttttttttttttttttttttt
acttctggtatcggtctacttccatcaggctttgtggaatgttctttcat
ttattgattagaggccaaggattgttcctgctcttttcaaacttggcaat
ttcatcacctattgattgatttttatagtcttacatttcttaaaacataa
tcccaagaaaacagtgggtgttcaagagagctgcaatctggaactagatg
caactttggatctggcttggaatcagaaagccagttttggagggggggtg
gggactggactggaggtccagtatgcataaaaactttgctttaatatgag
tatggaagaaacatgagttacctcaattttgcaaaagattcatttatatt
ata
gaattccttataacaccatgagacaaggaattgttgaacatgctcatcac
gctctgaaaatttggcttttaaaaacaaaacaggggcagttataccctcc
aaattctccaaaagcacatcttgattttgtcttgtttgttttaaattttt
tgcaaactgatgttaaaggtcagtctgcaacagaccgtcactggcatcca
gttacttccagttcttatgccatggtcaaatagtgggacctattaacaaa
tatggggaatggtccagacctgttttaatctggggaagaggttctgtctg
tgtttttttcacaaaaagaagatggagcacgatggctgcctgaaagactg
cttcagacatcttggatccaggactctgccaaaagtagtctggacaggtg
agagtgtggactacagaagctaacagcttctgggacaggcaggagccaca
gagtttctgaggcagcccccttttcgggctccagacatccaggcacctac
ctggccagaggataggtgtccacccagcccggcagggctttgcctcagcg
atggcaggagacatcttggatccaggactccgctgaaagtagtctgcaca
agtgagagtatggactacagaagctaacagcttctggggcaggcgggagt
cacagagcttctgagacagcccccttttcgggctccagacctcagggcac
cctcctggccagaggataggtgtctgccgggcccaggggggatttgaagg
agcacctgggggagccatcttggttcccagatctctctgagactagtctg
tgcaggtgaaagtgtggactatagaagctaacagcttctgtgagaggccg
aagcaacacagcttctgagacaggtcttgttttgggccttcatctttggc
aaggagggaggtctgaatgccagatatctctgtaccttccctgtagagag
agcttgcctgagagagtgctctgaccattaaactcagagagaagagctac
tctccaaggtctgctgaagagtctacagaaaaaacagaggaaaatctatc
agagacaactgaatatactcgagattacagattggtgaaagtatgtagat
ctttactacagaaacagaccctcactactcagaacctagacctccactcg
gcagtcagactcgaaccgaagctacgattaagacgattctctctagagat
ggtagagggacactacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_61620400_61621451
seq2: B6Ng01-054J23.b_43_1095

seq1  GAATTCTCCAAGACATGGATGTACTCGACAAAAACTCTCATGCTGCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAGACATGGATGTACTCGACAAAAACTCTCATGCTGCCATG  50

seq1  TTCTTCTATCTTTTCTCTTTTGTCAGTGGCCAGCATAATAGTATACCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTATCTTTTCTCTTTTGTCAGTGGCCAGCATAATAGTATACCATT  100

seq1  CCCCATTAATCTGTAATAGATAAGCAAATGGTTAAGGGAGAAGGAGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTAATCTGTAATAGATAAGCAAATGGTTAAGGGAGAAGGAGCAGG  150

seq1  GATACCACATGCATATTTCCACTTGAACTCCAGCCTATGGGTTAGGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCACATGCATATTTCCACTTGAACTCCAGCCTATGGGTTAGGGCCT  200

seq1  GAGCATACACACGGGTAGATCTCATGCCAGTTGTCACAATACTTACCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATACACACGGGTAGATCTCATGCCAGTTGTCACAATACTTACCATA  250

seq1  CTCTCCCTGCCTCTCAGTGAGAACAGAGGTCCCCAAATGTTGTTATATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTGCCTCTCAGTGAGAACAGAGGTCCCCAAATGTTGTTATATCT  300

seq1  GAATATCTTCTGGTCTTACTTCAAGGTCTGGAGCCATTCATTCATCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCTTCTGGTCTTACTTCAAGGTCTGGAGCCATTCATTCATCTAAT  350

seq1  AAATTGGGGCACTATACTCATCCACTCAAAGGGCCTACTTGGCTAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGGGCACTATACTCATCCACTCAAAGGGCCTACTTGGCTAAAACA  400

seq1  TTTCCCCAAAGCACATTCTGAGTGAAGTTACAATTCACTGATCATACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAAAGCACATTCTGAGTGAAGTTACAATTCACTGATCATACCTT  450

seq1  TTCTACATTAAAGTTCCTTTCCATAGAACTAGCTTCTTCTGCATGGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATTAAAGTTCCTTTCCATAGAACTAGCTTCTTCTGCATGGACAC  500

seq1  AGACTAGGGTCAGTCCCAAACACAGCAGCAGCACCAGCAGCTTCATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGGGTCAGTCCCAAACACAGCAGCAGCACCAGCAGCTTCATTTTG  550

seq1  GTAGATAGTAAAATTTTCTGCCTGTCAGAACCACGTCTTTCTGGTGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAGTAAAATTTTCTGCCTGTCAGAACCACGTCTTTCTGGTGATGG  600

seq1  TGCCTACACTCCACACCCCAGCTCCTTTGCTTGTACTTATATACTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACACTCCACACCCCAGCTCCTTTGCTTGTACTTATATACTCTCTG  650

seq1  GGTTCGGTGTTTTTTTGTTTTTTGTTGTTTTTTTTTTTTTTTTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCGGTGTTTTTTTGTTTTTTGTTGTTTTTTTTTTTTTTTTTTTTTTT  700

seq1  ACTTCTGGTATCGGTCTACTTCCATCAGGCTTTGTGGAATGTTCTTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGTATCGGTCTACTTCCATCAGGCTTTGTGGAATGTTCTTTCAT  750

seq1  TTATTGATTAGAGGCCAAGGATTGTTCCTGCTCTTTTCAAACTTGGCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATTAGAGGCCAAGGATTGTTCCTGCTCTTTTCAAACTTGGCAAT  800

seq1  TTCATCACCTATTGATTGATTTTTATAGTCTTACATTTCTTAAAACATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACCTATTGATTGATTTTTATAGTCTTACATTTCTTAAAACATAA  850

seq1  TCCCAAGAAAACAGTGGGTGTTCAAGAGAGCTGCAATCTGGAACTAGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGAAAACAGTGGGTGTTCAAGAGAGCTGCAATCTGGAACTAGATG  900

seq1  CAACTTTGGATCTGGCTTGGAATCAGAAAGCCAGTTTTGGA-GGGGGGTG  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAACTTTGGATCTGGCTTGGAATCAGAAAGCCAGTTTTGGAGGGGGGGTG  950

seq1  GGGACTGAACTGGAAGGTCAAGTATGCATAGAAACTTTGCTTTAATATGA  999
      ||||||| ||||| ||||| |||||||||| |||||||||||||||||||
seq2  GGGACTGGACTGG-AGGTCCAGTATGCATAAAAACTTTGCTTTAATATGA  999

seq1  GTATGGAAG-AACATGAGTTA-CTCAATTTTTGCAAAAGATTCATTTATA  1047
      ||||||||| ||||||||||| ||||| ||||||||||||||||||||||
seq2  GTATGGAAGAAACATGAGTTACCTCAA-TTTTGCAAAAGATTCATTTATA  1048

seq1  TTATA  1052
      |||||
seq2  TTATA  1053