BAC Information

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BAC

Clone NameB6Ng01-054L17
Chromosome4 (Build37)
Map Location 132,264,404 - 132,396,747
singlet/doubletdoublet
Overlap geneEya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8
Upstream genePtpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr
Downstream geneStx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054L17.bB6Ng01-054L17.g
ACCDH877399DH877400
length1,1261,098
definitionDH877399|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L17, 5' end.DH877400|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,264,404 - 132,265,672)(132,395,637 - 132,396,747)
sequence
gaattctagacatgccccccaatacccacttcaatatataccacatagtg
tagtattattactaattttgacttacaaccacagttggtactagttagta
gactaccgtattttaaagagcagctgtctatatccatcatggcaagtcaa
atagacccagatgctacattggatgagaggtaggcctgggattatagtgg
cagtgtccatgtgagatagtctgcccagaagtattgtaggtgttagtata
tctaaaagtcatgaattgttcaaagtgggagaggccttagaagtcttctt
taaatacctcatttggcattgagaaattaacatccatcatgcaggcagga
acagcacacacagtcatatagcaagtaaataagatggccgcattccctga
cttttggtcagtgggctttccaaggaatacttccctatatgtttttgtag
tgtgagtagaatgtagggcttatttaacctttgctacagaaacttctgag
tcgcacttgctctttgaatatacgaactcagagcatctaacagtgggctc
ccacatgagacctggtacgttttatgcagaatcaattagactcctagagc
agtgtgtgagtctgctatcgctggagttgcttcagaagtgattctagtac
gggggttggtccttccctctggaatcctggctgaaacattcagtacaggc
agaagttggtgctgtcactagggaatggcagctgggaaaggatccccatc
ccggccattcccactctctgtggaatcctaagcaacttccctttgttctt
tgtctttagaggtaagaactgttctaacagtcattgtccctgtgtggttc
ttggtgttgtgttgtggagtagggctattcaagtgtgttccatcagtcta
tagataacacccattggtacaaagaaggagcttgtatggaacctaagttt
ttctaaaacatggggagtgtaccacggacttggaggacatgcttcttcat
atagcaagtgcattcatggtgacttgctccagcatcttcgtataagcaag
tgcgttggtcacctggtcttctccagcacagccgggacagcagcgctaaa
gagaaaggtttcctggctccagccca
gaattcatgacgtttctgtttgaatatgaactaactctaactgtaggaga
gcctcagtgttgacgggacagggattgaaacagtcatggactcatcctta
aaactgctgtttcgctcttctttttcagggcaggtaaaccaccacctggc
ttacatctggatgtggtgaaaggagacaagctaattgaggtaatgaagca
caccgttctaaaggttttccaccgggactcacttcccaccctctccttta
ctttgtcttcagcaatgttacttcccttctgggtttctgctttttaagac
agggtcggccctgggtatcctggagctccctatatagagcagcctggcct
tgaactcaacaaagattgattgcctctgcctcctagtcctgtaaataaag
gcatggctaccacgcctgtctcatcttcctgacctcttttttggttttgg
tcccctgttaaaagctcatagggacctgggatggagctctgtaatagagt
ggctgcttagcattgggaaacccttttggatttattctccagcacgcaac
actctcacaactcctctcattactcctctccccttacaaatgaagatatt
tttaacaggtcataggcccaaggcacccacacaaaccggaaacccactga
tttgtaatttgtggaatgcatagttcatattaactaaagaaggttatgtt
atagattgagtttaacatttcagcgacttctgtgagattcagggtagtat
agtcaggaaggtcacttgtcgaaaagaacataaaatggaactaaaattca
ttcgttaaactaaggggagaggccagctctggtgccacatgcagaggcag
gctggtatctgagttggcgaccataagggctgtaacattggggttcctgt
cttaaaaatactaggagagacagatcatacataaaatatgtatttgtagt
taagtatataaaggaaaagtttaatagaattccagctagagtcacgtcag
atttagagtaaagtactagtattttgttcaactggtttggaataggtctc
acttattagcccttgtgcctgaaatcacagggatcacactgcctctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_132264404_132265672
seq2: B6Ng01-054L17.b_45_1170

seq1  GAATTCTAGACATGCCCCCCAATACCCACTTCAATATATACCACATAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACATGCCCCCCAATACCCACTTCAATATATACCACATAGTG  50

seq1  TAGTATTATTACTAATTTTGACTTACAACCACAGTTGGTACTAGTTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTATTACTAATTTTGACTTACAACCACAGTTGGTACTAGTTAGTA  100

seq1  GACTACCGTATTTTAAAGAGCAGCTGTCTATATCCATCATGGCAAGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACCGTATTTTAAAGAGCAGCTGTCTATATCCATCATGGCAAGTCAA  150

seq1  ATAGACCCAGATGCTACATTGGATGAGAGGTAGGCCTGGGATTATAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCCAGATGCTACATTGGATGAGAGGTAGGCCTGGGATTATAGTGG  200

seq1  CAGTGTCCATGTGAGATAGTCTGCCCAGAAGTATTGTAGGTGTTAGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCATGTGAGATAGTCTGCCCAGAAGTATTGTAGGTGTTAGTATA  250

seq1  TCTAAAAGTCATGAATTGTTCAAAGTGGGAGAGGCCTTAGAAGTCTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGTCATGAATTGTTCAAAGTGGGAGAGGCCTTAGAAGTCTTCTT  300

seq1  TAAATACCTCATTTGGCATTGAGAAATTAACATCCATCATGCAGGCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCTCATTTGGCATTGAGAAATTAACATCCATCATGCAGGCAGGA  350

seq1  ACAGCACACACAGTCATATAGCAAGTAAATAAGATGGCCGCATTCCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACACACAGTCATATAGCAAGTAAATAAGATGGCCGCATTCCCTGA  400

seq1  CTTTTGGTCAGTGGGCTTTCCAAGGAATACTTCCCTATATGTTTTTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTCAGTGGGCTTTCCAAGGAATACTTCCCTATATGTTTTTGTAG  450

seq1  TGTGAGTAGAATGTAGGGCTTATTTAACCTTTGCTACAGAAACTTCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTAGAATGTAGGGCTTATTTAACCTTTGCTACAGAAACTTCTGAG  500

seq1  TCGCACTTGCTCTTTGAATATACGAACTCAGAGCATCTAACAGTGGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACTTGCTCTTTGAATATACGAACTCAGAGCATCTAACAGTGGGCTC  550

seq1  CCACATGAGACCTGGTACGTTTTATGCAGAATCAATTAGACTCCTAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGAGACCTGGTACGTTTTATGCAGAATCAATTAGACTCCTAGAGC  600

seq1  AGTGTGTGAGTCTGCTATCGCTGGAGTTGCTTCAGAAGTGATTCTAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGAGTCTGCTATCGCTGGAGTTGCTTCAGAAGTGATTCTAGTAC  650

seq1  GGGGGTTGGTCCTTCCCTCTGGAATCCTGGCTGAAACATTCAGTACAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTGGTCCTTCCCTCTGGAATCCTGGCTGAAACATTCAGTACAGGC  700

seq1  AGAAGTTGGTGCTGTCACTAGGGAATGGCAGCTGGGAAAGGATCCCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGGTGCTGTCACTAGGGAATGGCAGCTGGGAAAGGATCCCCATC  750

seq1  CCGGCCATTCCCACTCTCTGTGGAATCCTAAGCAACTTCCCTTTGTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCATTCCCACTCTCTGTGGAATCCTAAGCAACTTCCCTTTGTTCTT  800

seq1  TGTCTTTAGAGGTAAGAACTGTTCTAACAGTCATTGTCCCTGTGTGGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTAGAGGTAAGAACTGTTCTAACAGTCATTGTCCCTGTGTGGTTC  850

seq1  TTGGTGTTGTGTTGTGGAGTAGGGCTATTCAAGTGTGTTCCATCAGTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTGTGTTGTGGAGTAGGGCTATTCAAGTGTGTTCCATCAGTCTA  900

seq1  TAGATAACACCCATTGGTAACAAAGAAGGAGCTTGTATGGAACCTAAG-T  949
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  TAGATAACACCCATTGGT-ACAAAGAAGGAGCTTGTATGGAACCTAAGTT  949

seq1  TTTCTAAAACAT-GGGAGTGTACACACGGGGACTTGGA-GACATTGCTTC  997
      |||||||||||| |||||||||| |||  ||||||||| |||| ||||||
seq2  TTTCTAAAACATGGGGAGTGTAC-CAC--GGACTTGGAGGACA-TGCTTC  995

seq1  TTCATATAGCAAGTGCATTCATTGGTGACTTGTCTCCAGCATCTTCGTAT  1047
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  TTCATATAGCAAGTGCATTCA-TGGTGACTTG-CTCCAGCATCTTCGTAT  1043

seq1  -AGCAAGTGCGTTGGTCACCT-GTCTGTCTCCAGCACAGCACGGGACAGC  1095
       |||||||||||||||||||| |||| ||||||||||||| |||||||||
seq2  AAGCAAGTGCGTTGGTCACCTGGTCT-TCTCCAGCACAGC-CGGGACAGC  1091

seq1  AGCAGCTTAAGGAAGGAAAGGTTTCTCTGGCTCACAGCCCACACTGTAGT  1145
      ||| ||| |||    |||||||||| ||||||| |||||||         
seq2  AGC-GCTAAAG---AGAAAGGTTTC-CTGGCTC-CAGCCCA---------  1126

seq1  CAGGACACAGTGGCAGGAGCAGGAGTCACCGGGCACACTGAGTCCACAGT  1195
                                                        
seq2  --------------------------------------------------  1126

seq1  CGGTAAACAAAGATGGGAGGGTACTGGTGCTCAGCTTGCTTTCTCCTTGT  1245
                                                        
seq2  --------------------------------------------------  1126

seq1  TATTCAGTCCAGGGCTCCAGCCCA  1269
                              
seq2  ------------------------  1126

seq1: chr4_132395637_132396747
seq2: B6Ng01-054L17.g_71_1168 (reverse)

seq1  GGAGAGGCAGGTGGATCACTGTGAATTCCAGGCCAACAAGGGCTATAGAG  50
      ||||||||||   |||| ||||| ||| |||||  ||||||||||   ||
seq2  GGAGAGGCAGTGTGATCCCTGTG-ATTTCAGGC--ACAAGGGCTAATAAG  47

seq1  TGAGACCCTATCTCAAAACCAGTTGAACAAAATACCTAGTTACTGTACTC  100
      ||||| ||||| || ||||||||||||||||||| |||| |||| |||||
seq2  TGAGA-CCTAT-TCCAAACCAGTTGAACAAAATA-CTAG-TACTTTACTC  93

seq1  TAAAATCTGACGTGACTCTAGCTGGAATTCTATTAAACTTTTCCTTTATA  150
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  T-AAATCTGACGTGACTCTAGCTGGAATTCTATTAAACTTTTCCTTTAT-  141

seq1  ATACTTAACTACAATTACATATTTTTATGTATGATTCTGTCTCTCCTTAG  200
      |||||||||||||| |||||| |||||||||||| ||||||||||| |||
seq2  ATACTTAACTACAAATACATA-TTTTATGTATGA-TCTGTCTCTCC-TAG  188

seq1  TATTTTTTAAGACAGG-ACCCCAATG-TACAGCCCTTATGGTCGCCAACT  248
      || ||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  TA-TTTTTAAGACAGGAACCCCAATGTTACAGCCCTTATGGTCGCCAACT  237

seq1  CAGATACCAGCCTGCCTCTGCATGTGGCACCAGAGCTGGCCTCTCCCCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACCAGCCTGCCTCTGCATGTGGCACCAGAGCTGGCCTCTCCCCTT  287

seq1  AGTTTAAACGAATGAATTTTAGTTCCATTTTATGTTCTTTTTCGACAAGT  348
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTTT-AACGAATGAATTTTAGTTCCATTTTATGTTC-TTTTCGACAAGT  335

seq1  GACCTTCCTGACTATACTACCCTGAATCTCACAGAAGTCGCTGAAATGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCCTGACTATACTACCCTGAATCTCACAGAAGTCGCTGAAATGTT  385

seq1  AAACTCAATCTATAACATAACCTTCTTTAGTTAATATGAACTATGCATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAATCTATAACATAACCTTCTTTAGTTAATATGAACTATGCATTC  435

seq1  CACAAATTACAAATCAGTGGGTTTCCGGTTTGTGTGGGTGCCTTGGGCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTACAAATCAGTGGGTTTCCGGTTTGTGTGGGTGCCTTGGGCCT  485

seq1  ATGACCTGTTAAAAATATCTTCATTTGTAAGGGGAGAGGAGTAATGAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGTTAAAAATATCTTCATTTGTAAGGGGAGAGGAGTAATGAGAG  535

seq1  GAGTTGTGAGAGTGTTGCGTGCTGGAGAATAAATCCAAAAGGGTTTCCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTGAGAGTGTTGCGTGCTGGAGAATAAATCCAAAAGGGTTTCCCA  585

seq1  ATGCTAAGCAGCCACTCTATTACAGAGCTCCATCCCAGGTCCCTATGAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGCAGCCACTCTATTACAGAGCTCCATCCCAGGTCCCTATGAGC  635

seq1  TTTTAACAGGGGACCAAAACCAAAAAAGAGGTCAGGAAGATGAGACAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAGGGGACCAAAACCAAAAAAGAGGTCAGGAAGATGAGACAGGC  685

seq1  GTGGTAGCCATGCCTTTATTTACAGGACTAGGAGGCAGAGGCAATCAATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGCCATGCCTTTATTTACAGGACTAGGAGGCAGAGGCAATCAATC  735

seq1  TTTGTTGAGTTCAAGGCCAGGCTGCTCTATATAGGGAGCTCCAGGATACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAGTTCAAGGCCAGGCTGCTCTATATAGGGAGCTCCAGGATACC  785

seq1  CAGGGCCGACCCTGTCTTAAAAAGCAGAAACCCAGAAGGGAAGTAACATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCGACCCTGTCTTAAAAAGCAGAAACCCAGAAGGGAAGTAACATT  835

seq1  GCTGAAGACAAAGTAAAGGAGAGGGTGGGAAGTGAGTCCCGGTGGAAAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGACAAAGTAAAGGAGAGGGTGGGAAGTGAGTCCCGGTGGAAAAC  885

seq1  CTTTAGAACGGTGTGCTTCATTACCTCAATTAGCTTGTCTCCTTTCACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAACGGTGTGCTTCATTACCTCAATTAGCTTGTCTCCTTTCACCA  935

seq1  CATCCAGATGTAAGCCAGGTGGTGGTTTACCTGCCCTGAAAAAGAAGAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGATGTAAGCCAGGTGGTGGTTTACCTGCCCTGAAAAAGAAGAGC  985

seq1  GAAACAGCAGTTTTAAGGATGAGTCCATGACTGTTTCAATCCCTGTCCCG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCAGTTTTAAGGATGAGTCCATGACTGTTTCAATCCCTGTCCCG  1035

seq1  TCAACACTGAGGCTCTCCTACAGTTAGAGTTAGTTCATATTCAAACAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTGAGGCTCTCCTACAGTTAGAGTTAGTTCATATTCAAACAGAA  1085

seq1  ACGTCATGAATTC  1111
      |||||||||||||
seq2  ACGTCATGAATTC  1098