BAC Information

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BAC

Clone NameB6Ng01-054P12
Chromosome4 (Build37)
Map Location 110,439,731 - 110,552,009
singlet/doubletdoublet
Overlap genenone
Upstream geneFaf1, Dmrta2, Elavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054P12.bB6Ng01-054P12.g
ACCDH877566DH877567
length1,1391,118
definitionDH877566|Mus musculus domesticus DNA, BAC clone: B6Ng01-054P12, 5' end.DH877567|Mus musculus domesticus DNA, BAC clone: B6Ng01-054P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,550,846 - 110,552,009)(110,439,731 - 110,440,581)
sequence
gaattcactttgtagacgaggctgaccttaaactcacagagatatacctg
gctccttagtgctgggattaaaggcatgcaacactacacccagctgatat
tccctaaagaatttggatttttttttaagtctttgttgatttagttccac
attttgaaacatgcttttcacctcatctttgcttattaaattgtatttat
caatgagacgttaatatgaagtttaatagcaacacatatctgtgacctca
ggtaacttgggtatctttttaagataaatctctttcctttaattctgaaa
ctctacctggtacccatgtcctgtataatctctcctaaacgattttcact
ttaatttttggagcaggatgctctattcctctctgcatctttgttttagc
tcttttatgaagtaaatgagccagtttggtccatgcttatgttatgtgtc
tgagtcaaagcacatttaaaagcaatgagccaactaaattgtaaaggcac
acacaccccaccccacctacccatcccctaatatggctactctggcaatc
aaaatctgctcaagaaagataactttagaaaagaacactaggaacagtac
ctgaaggtagtgtaggaggattcagtgaatcataagacatgagaccaaag
cacaggtgatagagctccacactgctctgagcgttgttggcatccacctg
gaacatacttggcctttggtatatattatttaaatagatagagttccatc
aaatttcccaaactccaaaggttaggaagcttccaaaaaagtataaaccg
tcatgatccaggccagaaaaacaagcatactgttcaagaggctaacttga
gcaaattcagtgaattgctcttgtgtgattttctccttgaatttaaatct
tgtatttagaattggtaatgggcaggagatacccctctgaaccacttaag
cagagtgcattgttactgctggcctttatctggatatcaatataaagtca
aaccagcacaaaggcgagctccaagtgactctaaagactttcatgttatt
tgtcagtaactgcagaacattaaatttctatataagtaaattataagaga
tgcactttacaagtaaagttctcagtcttatttttattc
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtctggactgggcgaagtgg
gcgttctgggttctgatgatggtgagtggtcctggtttctgttagtagga
ttcttacgtttacctttcgccatctggcaatctctggagttagttgttat
agttgtctttgttaagagattgttcctctgttgattttgttaccctcaat
cagcaggcgtgggagacaagctctctcctctgagtttcagtggtcagagc
agtctctgcaagcaagctctcctctttccgggaaggtgtacagttatctg
gtgtttggacctcctcctggctgaagatgaaggcccaaaacaggatcttt
cccagaagctgtgttgctttggccaggaaggtggccagttgtctagagtc
gaagatgtcgctgcctcagaagctctgtggctctcgccaagaaggtggcc
ggccgtctggagccgaagatggcgccgccttagaagctctgtggctcttg
ccaggaaggtggctggttgtctggagacgaagatggcgccgtcccagaag
ctctgcgactctcgcccgtaccagaaacggctggcctctgtattccaccc
ggtcacccgtgcagcctgccctccgcggagtccaggagccaagaaggctc
ctgccggcgcctgtgacacaaacctctcagccgggcagacccccgtgctc
tccctgtagaaaatttaaagtataatatatatttatatggagagatttat
aaacataaaaagtaaaatatatctgtagtatgatttctttctttttaaga
attatttattcactatacatcccagtatcagccccctggtactctcacac
tgatcataccccattctctccttctgctctctgaaaaggggagccctggg
ctgttttctgtcccccaccccagttgagcatcagtcacatgggactaggc
acatctcccactaagcagacaagtagccagctaggggaacagatccatag
cagaataatgatcagaaaggccccactcaggggttaagcagctcatgaaa
tcagctgtacttccacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_110550846_110552009
seq2: B6Ng01-054P12.b_50_1188 (reverse)

seq1  GAATAAAAAATAAAGGAACTGAGAACTTTTTAATTTTGTAAAGTGCATTC  50
      |||| ||||||||    ||||||||||||      |||||||||||| ||
seq2  GAAT-AAAAATAA---GACTGAGAACTTT----ACTTGTAAAGTGCA-TC  41

seq1  TTCCTTATAATTTACTTAATATAGAAATTTAATGTTCTGCAGTTTACTGA  100
      |  |||||||||||||| |||||||||||||||||||||||| |||||| 
seq2  T--CTTATAATTTACTT-ATATAGAAATTTAATGTTCTGCAG-TTACTG-  86

seq1  ACAAATAACATTGAAAGTCTTTTAGAGTCAACTTGGGAGCTCGCCTTTGG  150
      |||||||||| |||||||| ||||||||| |||| |||||||||||||| 
seq2  ACAAATAACA-TGAAAGTC-TTTAGAGTC-ACTT-GGAGCTCGCCTTTG-  131

seq1  TTGCTGGTTTGACTTTATTATTTGATTATCCAGATAAAGGCCAGCAGTAA  200
       |||||||||||||||||   |||| ||||||||||||||||||||||||
seq2  -TGCTGGTTTGACTTTAT--ATTGA-TATCCAGATAAAGGCCAGCAGTAA  177

seq1  CAATGCACTCTGCCTTAAGTGGTTCAGAGGGGTTATCTCCTGCCCATTAC  250
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  CAATGCACTCTG-CTTAAGTGGTTCAGAGGGG-TATCTCCTGCCCATTAC  225

seq1  CAATTCTAAATACAAGATTTAAATTCAAGGAGAAAATCACACAAGAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTAAATACAAGATTTAAATTCAAGGAGAAAATCACACAAGAGCAA  275

seq1  TTCACTGAATTTGCTCAAGTTAGCCTCTTGAACAGTATGCTTGTTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAATTTGCTCAAGTTAGCCTCTTGAACAGTATGCTTGTTTTTCT  325

seq1  GGCCTGGATCATGACGGTTTATACTTTTTTGGAAGCTTCCTAACCTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGATCATGACGGTTTATACTTTTTTGGAAGCTTCCTAACCTTTGG  375

seq1  AGTTTGGGAAATTTGATGGAACTCTATCTATTTAAATAATATATACCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGAAATTTGATGGAACTCTATCTATTTAAATAATATATACCAAA  425

seq1  GGCCAAGTATGTTCCAGGTGGATGCCAACAACGCTCAGAGCAGTGTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGTATGTTCCAGGTGGATGCCAACAACGCTCAGAGCAGTGTGGAG  475

seq1  CTCTATCACCTGTGCTTTGGTCTCATGTCTTATGATTCACTGAATCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCACCTGTGCTTTGGTCTCATGTCTTATGATTCACTGAATCCTCC  525

seq1  TACACTACCTTCAGGTACTGTTCCTAGTGTTCTTTTCTAAAGTTATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTACCTTCAGGTACTGTTCCTAGTGTTCTTTTCTAAAGTTATCTTT  575

seq1  CTTGAGCAGATTTTGATTGCCAGAGTAGCCATATTAGGGGATGGGTAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCAGATTTTGATTGCCAGAGTAGCCATATTAGGGGATGGGTAGGT  625

seq1  GGGGTGGGGTGTGTGTGCCTTTACAATTTAGTTGGCTCATTGCTTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGTGTGTGTGCCTTTACAATTTAGTTGGCTCATTGCTTTTAAA  675

seq1  TGTGCTTTGACTCAGACACATAACATAAGCATGGACCAAACTGGCTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTGACTCAGACACATAACATAAGCATGGACCAAACTGGCTCATT  725

seq1  TACTTCATAAAAGAGCTAAAACAAAGATGCAGAGAGGAATAGAGCATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCATAAAAGAGCTAAAACAAAGATGCAGAGAGGAATAGAGCATCCT  775

seq1  GCTCCAAAAATTAAAGTGAAAATCGTTTAGGAGAGATTATACAGGACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAAAATTAAAGTGAAAATCGTTTAGGAGAGATTATACAGGACATG  825

seq1  GGTACCAGGTAGAGTTTCAGAATTAAAGGAAAGAGATTTATCTTAAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCAGGTAGAGTTTCAGAATTAAAGGAAAGAGATTTATCTTAAAAAG  875

seq1  ATACCCAAGTTACCTGAGGTCACAGATATGTGTTGCTATTAAACTTCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAAGTTACCTGAGGTCACAGATATGTGTTGCTATTAAACTTCATA  925

seq1  TTAACGTCTCATTGATAAATACAATTTAATAAGCAAAGATGAGGTGAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGTCTCATTGATAAATACAATTTAATAAGCAAAGATGAGGTGAAAA  975

seq1  GCATGTTTCAAAATGTGGAACTAAATCAACAAAGACTTAAAAAAAAATCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTCAAAATGTGGAACTAAATCAACAAAGACTTAAAAAAAAATCC  1025

seq1  AAATTCTTTAGGGAATATCAGCTGGGTGTAGTGTTGCATGCCTTTAATCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTTAGGGAATATCAGCTGGGTGTAGTGTTGCATGCCTTTAATCC  1075

seq1  CAGCACTAAGGAGCCAGGTATATCTCTGTGAGTTTAAGGTCAGCCTCGTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTAAGGAGCCAGGTATATCTCTGTGAGTTTAAGGTCAGCCTCGTC  1125

seq1  TACAAAGTGAATTC  1164
      ||||||||||||||
seq2  TACAAAGTGAATTC  1139

seq1: chr4_110439731_110440581
seq2: B6Ng01-054P12.g_357_1185

seq1  GTGGTCAGAGCAGTCTCTGCAAGCAAGCTCTCCTCTTTCCGGGAAGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAGAGCAGTCTCTGCAAGCAAGCTCTCCTCTTTCCGGGAAGGTGT  50

seq1  ACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGATGAAGGCCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGATGAAGGCCCAAA  100

seq1  ACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGT  150

seq1  TGTCTAGAGTCGAAGATGTCGCTGCCTCAGAAGCTCTGTGGCTCTCGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGAGTCGAAGATGTCGCTGCCTCAGAAGCTCTGTGGCTCTCGCCA  200

seq1  AGAAGGTGGCCGGCCGTCTGGAGCCGAAGATGGCGCCGCCTTAGAAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGGCCGGCCGTCTGGAGCCGAAGATGGCGCCGCCTTAGAAGCTC  250

seq1  TGTGGCTCTTGCCAGGAAGGTGGCTGGTTGTCTGGAGACGAAGATGGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCTTGCCAGGAAGGTGGCTGGTTGTCTGGAGACGAAGATGGCGC  300

seq1  CGTCCCAGAAGCTCTGCGACTCTCGCCCGTACCAGAAACGGCTGGCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCCAGAAGCTCTGCGACTCTCGCCCGTACCAGAAACGGCTGGCCTCT  350

seq1  GTATTCCACCCGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCAGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCACCCGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCAGGAGC  400

seq1  CAAGAAGGCTCCTGCCGGCGCCTGTGACACAAACCTCTCAGGCCGGGCAG  450
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAGAAGGCTCCTGCCGGCGCCTGTGACACAAACCTCTCA-GCCGGGCAG  449

seq1  ACCCCCGTGCTCTCCCTGTAGAAAATTTAAAGTATAATATATATTTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCGTGCTCTCCCTGTAGAAAATTTAAAGTATAATATATATTTATAT  499

seq1  GGAGAGATTTATAAACATAAAAAGTAAAATATATCTGTAGTATGATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATTTATAAACATAAAAAGTAAAATATATCTGTAGTATGATTTCT  549

seq1  TTCTTTTTAAGAATTATTTATTCACTATACATCCCAGTATCAGCCCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTAAGAATTATTTATTCACTATACATCCCAGTATCAGCCCCCTG  599

seq1  GTACTCCTCACACTGATCATACCCCCATTCTCTCCTTCTTGCTCCTCTGA  650
      ||||| ||||||||||||||| |||||||||||||||| |||| ||||||
seq2  GTACT-CTCACACTGATCATA-CCCCATTCTCTCCTTC-TGCT-CTCTGA  645

seq1  AAAGGGGAGCCCCTGGGCTGTTTTCTGTCCCCCACCCCAGTGGAGCATCA  700
      ||||||||| ||||||||||||||||||||||||||||||| ||||||| 
seq2  AAAGGGGAG-CCCTGGGCTGTTTTCTGTCCCCCACCCCAGTTGAGCATC-  693

seq1  AGTCACCATGGGACTAGGCACATCTCCCACTAAGGCCAGACAAGGTAGCC  750
      ||||| ||||||||||||||||||||||||||||  ||||||| |||| |
seq2  AGTCA-CATGGGACTAGGCACATCTCCCACTAAG--CAGACAA-GTAG-C  738

seq1  CAGCTAGGGGAACAGGATCCATAGGCAGATAATTGATTCAGGGACAGCCC  800
      |||||||||||||| |||||||| |||||  | ||| |||  || || ||
seq2  CAGCTAGGGGAACA-GATCCATA-GCAGAATAATGA-TCA--GAAAGGCC  783

seq1  CCACTTCAGGTGTTAGGCAAAGCTCATGAACATCAAGCTGTACTTCCACT  850
      |||| ||||| |||| ||  |||||||||| ||| |||||||||||||||
seq2  CCAC-TCAGGGGTTAAGC--AGCTCATGAA-ATC-AGCTGTACTTCCACT  828

seq1  A  851
      |
seq2  A  829