BAC Information

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BAC

Clone NameB6Ng01-054P23
Chromosome4 (Build37)
Map Location 108,199,345 - 108,200,236
singlet/doubletsinglet
Overlap geneZcchc11
Upstream geneGlis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, LOC100040110
Downstream genePrpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054P23.bB6Ng01-054P23.g
ACCDH877584DH877585
length9911,165
definitionDH877584|Mus musculus domesticus DNA, BAC clone: B6Ng01-054P23, 5' end.DH877585|Mus musculus domesticus DNA, BAC clone: B6Ng01-054P23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaccttatttatttatttacagaaattaaactgtaaagaaataa
ttgaaaatttggcgaaaattcttaagaggcatccaggtaaaatttcatat
ctttatttcaaaaaaagactttctggcattataaaaattatttagctttc
ttaagtttttgttccccaaccctcaggtttaagaaacattctgcctataa
ctactgccaaagtgcctattgtaaaatttgaacacaggagaagtggacta
gaaggtgatatcagtttatataacacattggtaagtttttcttttaggcc
cagccatctataattatactttaaaatttttacttgaaaattatttttat
attttaagtatatagttatattaaaatataactacatccttttccttgtg
tttttttgctttgttttgttttgttttttcttttcttgagcctgacggtg
gtggtgcacacctgcagacctaacagttggtaacagttgggaggtagagg
caggttggatctcttgagtttgaggccagccatgactacacagagaaacc
ctgtcttgagaaacaaaacaaaacaaaacaaaaaatttcagatcccatgc
ccatttctgaatggattggtttttgctttgttcttactgtattttgaatt
ctttatatattctgaatattaatcctttgtaatctttacagatgacaaat
gtcccctgttctgtggaatctctcctcagttggttgtttcttagttgctt
agaagctttttagtttcatgaggtcctcaattgttggattaactcctggg
caagtggggtcctaattaagaaagtcttctcctggagctagtgagatggc
tcagtggttaagaacactgagtgctcttccaaaggtcctccattcaattc
ccagcaaccacatggtggctcacaaccatctgcaatgggatctgatgccc
tcttctgtgtgtctgaagacagctacagtgtactcatatac
gaattcacagagatccaccttccccatcttggtctagttattcttgttgt
gttacaaaccacccccaaatttgatgttgtaaagcagttcttttatcatg
cttgctgactcctctagctaaggagtcttttttttttttttaagatttat
tttatgtatatgagtacactgtagctgtctttagacacaccagaagaagg
cattggatcccattatagatggttgtgagccaccatgtggttgctaggat
ttgaattcaggacctctggaagagcagtcagtgctcctaaccaccaagcc
atctctccagccccctggctagggaatcttggtaggatactacagagagt
ttgacactgctccatgacatttggtatgacttaaagacacaaaattattt
cctggaaatgagataaaattccctgaaaaatttttcacatatatgtctag
gggctgggatgattcggagacgagtgtcgcagtggcaaagcagaagctgc
attgcctttgtgccctgcctggaaactcatgtagtgtcccttcacaacac
tccagtgctgacagcagggagacacgactgcacattctcaggaaggaata
ggaaggggcattgtaggggagtgtgcaagacaggcagtattgtgtcttta
cataataattggctatatgtggccatgagttggtgtatttttacccccag
gagtgcagttggattatattgctatagtgttttgtttgtttgtcttctga
gacagtgtctcactatgtagccttggctgatctggaacttgacatgcaaa
ctgtcataccgttgaattcacaaaactctgcttgctggctaagcactgaa
acagtttttaaaccaaaatcattttaacagtaaggatgatgttgacttat
atgttaatactgtactaagtagaatgcagatgattactgaaatgtgtgta
tatagtaaaatacatgttactaccttaaataaactaacattctgctctag
cactatcaagctgaaaataagttacagcacattttaaacttcttactgat
ttacaggggaaactgacaagatgaactacagtctctgacttttagatgcc
tgactatgtttgcaagataactttgccttatggctatgcttctgttcacc
tcgaagtctgcatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_108199345_108200236
seq2: B6Ng01-054P23.b_49_940

seq1  GAATTCTACCTTATTTATTTATTTACAGAAATTAAACTGTAAAGAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTTATTTATTTATTTACAGAAATTAAACTGTAAAGAAATAA  50

seq1  TTGAAAATTTGGCGAAAATTCTTAAGAGGCATCCAGGTAAAATTTCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTTGGCGAAAATTCTTAAGAGGCATCCAGGTAAAATTTCATAT  100

seq1  CTTTATTTCAAAAAAAGACTTTCTGGCATTATAAAAATTATTTAGCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCAAAAAAAGACTTTCTGGCATTATAAAAATTATTTAGCTTTC  150

seq1  TTAAGTTTTTGTTCCCCAACCCTCAGGTTTAAGAAACATTCTGCCTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTTTGTTCCCCAACCCTCAGGTTTAAGAAACATTCTGCCTATAA  200

seq1  CTACTGCCAAAGTGCCTATTGTAAAATTTGAACACAGGAGAAGTGGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCCAAAGTGCCTATTGTAAAATTTGAACACAGGAGAAGTGGACTA  250

seq1  GAAGGTGATATCAGTTTATATAACACATTGGTAAGTTTTTCTTTTAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGATATCAGTTTATATAACACATTGGTAAGTTTTTCTTTTAGGCC  300

seq1  CAGCCATCTATAATTATACTTTAAAATTTTTACTTGAAAATTATTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCTATAATTATACTTTAAAATTTTTACTTGAAAATTATTTTTAT  350

seq1  ATTTTAAGTATATAGTTATATTAAAATATAACTACATCCTTTTCCTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTATATAGTTATATTAAAATATAACTACATCCTTTTCCTTGTG  400

seq1  TTTTTTTGCTTTGTTTTGTTTTGTTTTTTCTTTTCTTGAGCCTGACGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCTTTGTTTTGTTTTGTTTTTTCTTTTCTTGAGCCTGACGGTG  450

seq1  GTGGTGCACACCTGCAGACCTAACAGTTGGTAACAGTTGGGAGGTAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCACACCTGCAGACCTAACAGTTGGTAACAGTTGGGAGGTAGAGG  500

seq1  CAGGTTGGATCTCTTGAGTTTGAGGCCAGCCATGACTACACAGAGAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGATCTCTTGAGTTTGAGGCCAGCCATGACTACACAGAGAAACC  550

seq1  CTGTCTTGAGAAACAAAACAAAACAAAACAAAAAATTTCAGATCCCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGAGAAACAAAACAAAACAAAACAAAAAATTTCAGATCCCATGC  600

seq1  CCATTTCTGAATGGATTGGTTTTTGCTTTGTTCTTACTGTATTTTGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTGAATGGATTGGTTTTTGCTTTGTTCTTACTGTATTTTGAATT  650

seq1  CTTTATATATTCTGAATATTAATCCTTTGTAATCTTTACAGATGACAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATATTCTGAATATTAATCCTTTGTAATCTTTACAGATGACAAAT  700

seq1  GTCCCCTGTTCTGTGGAATCTCTCCTCAGTTGGTTGTTTCTTAGTTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGTTCTGTGGAATCTCTCCTCAGTTGGTTGTTTCTTAGTTGCTT  750

seq1  AGAAGCTTTTTAGTTTCATGAGGTCCTCAATTGTTGGATTAACTCCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTTTTAGTTTCATGAGGTCCTCAATTGTTGGATTAACTCCTGGG  800

seq1  CAAGTGGGGTCCTAATTAAGAAAGTCTTCTCCTGGAGCTAGTGAGATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGGGTCCTAATTAAGAAAGTCTTCTCCTGGAGCTAGTGAGATGGC  850

seq1  TCAGTGGTTAAGAACACTGAGTGCTCTTCCAAAGGTCCTCCA  892
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTTAAGAACACTGAGTGCTCTTCCAAAGGTCCTCCA  892