BAC Information

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BAC

Clone NameB6Ng01-055C23
Chromosome4 (Build37)
Map Location 79,059,859 - 79,183,020
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055C23.bB6Ng01-055C23.g
ACCDH877717DH877718
length1,1141,148
definitionDH877717|Mus musculus domesticus DNA, BAC clone: B6Ng01-055C23, 5' end.DH877718|Mus musculus domesticus DNA, BAC clone: B6Ng01-055C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,059,859 - 79,060,979)(79,181,845 - 79,183,020)
sequence
gaattccaggttccatgatgggctaactagatgatagcctttatcattgg
ttttgactacaattggtttgtatacagtattaattattttgggggcacat
ctcatatttaatccagaaaatagtcatttatcatcataagcagtccatgg
ttgtaccaataagcacatcttgcctggcagatcaatattcaacatgcagt
gttctgctctggttactaccagaattctttcgttccccaaccatcgaaca
ttactttttagcactatgaaagctacccagcatgtagactatcctagtaa
gtatgagattatttgttttacaacccaattgtgtagtgttaaaagaaata
agaacatatcatctggttattttttgcagtgaagaatgatgagcacagcc
tgtttattggttactgctggaccctacaatatctatagattagaatgcca
ggaatggagatcattattttataaccagtatcttaagtgaggaacattgt
ctaactatgtagtgtatatctgttcaacattctttttaagttatatttta
aattaattttataatagttgttttctataatgcttcttttgtatatcctt
agttttagttaaataatagtttataccttcctctcttcctcttgttccat
gcttgctttagcctttaacagcaaaaattctcacctgtcctttctggcca
catgtgatgtatttattagtctttctaatgctacttctttgaattacaaa
atcatagttttgttcttattgatttttatatacatgtttcacattggtag
gcacttgcccctgcccacccatttcctgattcaccctatattcttgaaac
ttctgtacccattacttctccactctgcatttattcatgatacattttat
taccccaatcacttaatgcatcaccacaaacagctcatttctagttgcct
ggattcttcatgtattccaaattcagcagatcatattcaacatgcagtgt
tctgctctggttactaccagaattctttcgttcccaattctttcgtttgg
atgtagttatgaagagaacatatatttattggattctgactggtattctt
aagttctttagaga
gaattcattaaagtactttgcagagaacaaacagtatcactttaatcaga
gtaacttgccctggtataccaatggaggaaaaatgtgaaaaattaaattg
agatttttttttctgattgatgggaatggagagagtgctgtctctgccct
atgtctaggatgacaattttctgaccttcttaaacactctactggcaatc
tccctgatattctgtcattttgcaggcatggaaacaaacagttacagagg
cataattcttatcaggaaatatttcattcatttattaaattattttaatc
tgaatatgaaatgacttacagtttatatttaaagctataattttaaagtt
tgtatttatgtgtatggggtgtatgggcttgtcagcttgaggtgttttgc
tcttacaatacaacatcattaaaaatgacatcaacattttagctgactgg
agatatttcttattcttggtatatagaccagtcacttgactagtgaaatt
ggtttcaaaaggcttagagcaaaattgctttgacaagatgtcacagtctg
aaatttgggtgacaagatggatctctgtgaatagtgcaaaagaaagatga
cataaattaatttcaaaataaccccttgattctgctgacaaaaagaaatg
aacattgactgctaaaggcccatcagtgatcccactactacacatgtata
aaataatgagtcgggaggaatttcagatcagttttcattgacagaattgt
tgaagtaatgaggagaaatgcttcaaaaagtacaactagaaatattcact
tggattataactacaactgagttttctcaggaaccattaatataaaagga
gtagtaaatccctgagacttctaggtgaagtgcttgtgcctctaaggtgt
ataactccatgcattatactgtaaatggagaggttggtacttttatattc
atgatgcacttcacataaaatgcgcctgtttgtccagatgtctctgtttc
cactggggaagacctccttcaagttgctgcttcatctccaaaaatctctt
aaaactgtcttaaatttgaagaaaatctcatccatctatcttgccaagac
agaaacaccaaacaatatgcggaaccaataggttatatatttatcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79059859_79060979
seq2: B6Ng01-055C23.b_48_1161

seq1  GAATTCCAGGTTCCATGATGGGCTAACTAGATGATAGCCTTTATCATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTCCATGATGGGCTAACTAGATGATAGCCTTTATCATTGG  50

seq1  TTTTGACTACAATTGGTTTGTATACAGTATTAATTATTTTGGGGGCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTACAATTGGTTTGTATACAGTATTAATTATTTTGGGGGCACAT  100

seq1  CTCATATTTAATCCAGAAAATAGTCATTTATCATCATAAGCAGTCCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTTAATCCAGAAAATAGTCATTTATCATCATAAGCAGTCCATGG  150

seq1  TTGTACCAATAAGCACATCTTGCCTGGCAGATCAATATTCAACATGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCAATAAGCACATCTTGCCTGGCAGATCAATATTCAACATGCAGT  200

seq1  GTTCTGCTCTGGTTACTACCAGAATTCTTTCGTTCCCCAACCATCGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTCTGGTTACTACCAGAATTCTTTCGTTCCCCAACCATCGAACA  250

seq1  TTACTTTTTAGCACTATGAAAGCTACCCAGCATGTAGACTATCCTAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTTAGCACTATGAAAGCTACCCAGCATGTAGACTATCCTAGTAA  300

seq1  GTATGAGATTATTTGTTTTACAACCCAATTGTGTAGTGTTAAAAGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGATTATTTGTTTTACAACCCAATTGTGTAGTGTTAAAAGAAATA  350

seq1  AGAACATATCATCTGGTTATTTTTTGCAGTGAAGAATGATGAGCACAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATATCATCTGGTTATTTTTTGCAGTGAAGAATGATGAGCACAGCC  400

seq1  TGTTTATTGGTTACTGCTGGACCCTACAATATCTATAGATTAGAATGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTGGTTACTGCTGGACCCTACAATATCTATAGATTAGAATGCCA  450

seq1  GGAATGGAGATCATTATTTTATAACCAGTATCTTAAGTGAGGAACATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGAGATCATTATTTTATAACCAGTATCTTAAGTGAGGAACATTGT  500

seq1  CTAACTATGTAGTGTATATCTGTTCAACATTCTTTTTAAGTTATATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTATGTAGTGTATATCTGTTCAACATTCTTTTTAAGTTATATTTTA  550

seq1  AATTAATTTTATAATAGTTGTTTTCTATAATGCTTCTTTTGTATATCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTTATAATAGTTGTTTTCTATAATGCTTCTTTTGTATATCCTT  600

seq1  AGTTTTAGTTAAATAATAGTTTATACCTTCCTCTCTTCCTCTTGTTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGTTAAATAATAGTTTATACCTTCCTCTCTTCCTCTTGTTCCAT  650

seq1  GCTTGCTTTAGCCTTTAACAGCAAAAATTCTCACCTGTCCTTTCTGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTTAGCCTTTAACAGCAAAAATTCTCACCTGTCCTTTCTGGCCA  700

seq1  CATGTGATGTATTTATTAGTCTTTCTAATGCTACTTCTTTGAATTACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATGTATTTATTAGTCTTTCTAATGCTACTTCTTTGAATTACAAA  750

seq1  ATCATAGTTTTGTTCTTATTGATTTTTATATACATGTTTCACATTGGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGTTTTGTTCTTATTGATTTTTATATACATGTTTCACATTGGTAG  800

seq1  GCACTTGCCCCTGCCCACCCATTTCCTGATTCACCCTATATTCTTGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGCCCCTGCCCACCCATTTCCTGATTCACCCTATATTCTTGAAAC  850

seq1  TTCTGTACCCATTACTTCTCCACTCTGCATTTATTCATGATACATTTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACCCATTACTTCTCCACTCTGCATTTATTCATGATACATTTTAT  900

seq1  TACCCCAATCACTTAATGCATCACCAACAAACAGCTCATTTCTAGTTGCC  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACCCCAATCACTTAATGCATCACC-ACAAACAGCTCATTTCTAGTTGCC  949

seq1  TGGATTCTTCATGTATTCCAAATTCAGCAGATCAATATTCAACATGCAGT  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGATTCTTCATGTATTCCAAATTCAGCAGATC-ATATTCAACATGCAGT  998

seq1  GTTCTGCTCTGGTTACTACCAGAATTCTTTCGTTCCCCAATTCTTTCGTT  1050
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTTCTGCTCTGGTTACTACCAGAATTCTTTCGTT-CCCAATTCTTTCGTT  1047

seq1  TGGATGTAGGTTATGAAAGAGAACATATATTATTTGGATTCTGGACTTGG  1100
      |||||||| |||||| |||||||||||||||  ||||||||| ||||  |
seq2  TGGATGTA-GTTATG-AAGAGAACATATATTTATTGGATTCT-GACT--G  1092

seq1  GTATTCTTAAGTTC-TTAGAGA  1121
      |||||||||||||| |||||||
seq2  GTATTCTTAAGTTCTTTAGAGA  1114

seq1: chr4_79181845_79183020
seq2: B6Ng01-055C23.g_65_1212 (reverse)

seq1  AAGGAATAAATATATATAACCTTATTGGTTCTGCATTATTTTGTTTTGTG  50
      |||| ||||  |||||||||| ||||||||| ||   || |||||| |||
seq2  AAGG-ATAA--ATATATAACC-TATTGGTTCCGC---ATATTGTTTGGTG  43

seq1  TTGTCTTGTCTTTTGCCAGGTAGATGGAATGAGAATTTTTCCTTCAAATT  100
      || || |||| || || || ||||||| ||||||   ||| ||||||| |
seq2  TT-TC-TGTC-TTGGCAAGATAGATGG-ATGAGA---TTTTCTTCAAA-T  85

seq1  TTAAGACAGTTTTTAAGAGATTTTTTTGGAGATGAAGCAGCAACTTGAAA  150
      ||||||||| ||||||||||  ||||||||||||||||||||||||| ||
seq2  TTAAGACAG-TTTTAAGAGA--TTTTTGGAGATGAAGCAGCAACTTG-AA  131

seq1  GGAGCTCTTTCCCCAGTGGAAAACAGAGGACAATCTGGACAAACAGGCGC  200
      |||| || ||||||||||| ||||||| ||| ||||||||||||||||||
seq2  GGAGGTC-TTCCCCAGTGG-AAACAGA-GAC-ATCTGGACAAACAGGCGC  177

seq1  ATTTTTAATGTGAAGTGCATCATGAATATAAAAAGTACCAACCTCTTCCA  250
      |||||  |||||||||||||||||||||| ||||||||||||||| ||||
seq2  ATTTT--ATGTGAAGTGCATCATGAATAT-AAAAGTACCAACCTC-TCCA  223

seq1  TTTACAGTATAATGCATGGAGTTATACACCTTAGAGGCACAAAGCACTTC  300
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTACAGTATAATGCATGGAGTTATACACCTTAGAGGCAC-AAGCACTTC  272

seq1  ACCTAGAAGTCTCAGGGATTTACTACTCCTTTTATATTAATGGTTCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAAGTCTCAGGGATTTACTACTCCTTTTATATTAATGGTTCCTGA  322

seq1  GAAAACTCAGTTGTAGTTATAATCCAAGTGAATATTTCTAGTTGTACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCAGTTGTAGTTATAATCCAAGTGAATATTTCTAGTTGTACTTT  372

seq1  TTGAAGCATTTCTCCTCATTACTTCAACAATTCTGTCAATGAAAACTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCATTTCTCCTCATTACTTCAACAATTCTGTCAATGAAAACTGAT  422

seq1  CTGAAATTCCTCCCGACTCATTATTTTATACATGTGTAGTAGTGGGATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTCCTCCCGACTCATTATTTTATACATGTGTAGTAGTGGGATCA  472

seq1  CTGATGGGCCTTTAGCAGTCAATGTTCATTTCTTTTTGTCAGCAGAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGGCCTTTAGCAGTCAATGTTCATTTCTTTTTGTCAGCAGAATCA  522

seq1  AGGGGTTATTTTGAAATTAATTTATGTCATCTTTCTTTTGCACTATTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTATTTTGAAATTAATTTATGTCATCTTTCTTTTGCACTATTCAC  572

seq1  AGAGATCCATCTTGTCACCCAAATTTCAGACTGTGACATCTTGTCAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCATCTTGTCACCCAAATTTCAGACTGTGACATCTTGTCAAAGC  622

seq1  AATTTTGCTCTAAGCCTTTTGAAACCAATTTCACTAGTCAAGTGACTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCTCTAAGCCTTTTGAAACCAATTTCACTAGTCAAGTGACTGGT  672

seq1  CTATATACCAAGAATAAGAAATATCTCCAGTCAGCTAAAATGTTGATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATACCAAGAATAAGAAATATCTCCAGTCAGCTAAAATGTTGATGTC  722

seq1  ATTTTTAATGATGTTGTATTGTAAGAGCAAAACACCTCAAGCTGACAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATGATGTTGTATTGTAAGAGCAAAACACCTCAAGCTGACAAGC  772

seq1  CCATACACCCCATACACATAAATACAAACTTTAAAATTATAGCTTTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACACCCCATACACATAAATACAAACTTTAAAATTATAGCTTTAAAT  822

seq1  ATAAACTGTAAGTCATTTCATATTCAGATTAAAATAATTTAATAAATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTGTAAGTCATTTCATATTCAGATTAAAATAATTTAATAAATGAA  872

seq1  TGAAATATTTCCTGATAAGAATTATGCCTCTGTAACTGTTTGTTTCCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTTCCTGATAAGAATTATGCCTCTGTAACTGTTTGTTTCCATG  922

seq1  CCTGCAAAATGACAGAATATCAGGGAGATTGCCAGTAGAGTGTTTAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAAATGACAGAATATCAGGGAGATTGCCAGTAGAGTGTTTAAGAA  972

seq1  GGTCAGAAAATTGTCATCCTAGACATAGGGCAGAGACAGCACTCTCTCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAAAATTGTCATCCTAGACATAGGGCAGAGACAGCACTCTCTCCA  1022

seq1  TTCCCATCAATCAGAAAAAAAAATCTCAATTTAATTTTTCACATTTTTCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCAATCAGAAAAAAAAATCTCAATTTAATTTTTCACATTTTTCC  1072

seq1  TCCATTGGTATACCAGGGCAAGTTACTCTGATTAAAGTGATACTGTTTGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGTATACCAGGGCAAGTTACTCTGATTAAAGTGATACTGTTTGT  1122

seq1  TCTCTGCAAAGTACTTTAATGAATTC  1176
      ||||||||||||||||||||||||||
seq2  TCTCTGCAAAGTACTTTAATGAATTC  1148