BAC Information

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BAC

Clone NameB6Ng01-055F07
Chromosome4 (Build37)
Map Location 122,527,429 - 122,667,392
singlet/doubletdoublet
Overlap genePpt1, Cap1, Mfsd2
Upstream geneLOC666931, LOC666937, LOC633269, LOC633279, 9530002B09Rik
Downstream geneMycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055F07.bB6Ng01-055F07.g
ACCDH877810DH877811
length525400
definitionDH877810|Mus musculus domesticus DNA, BAC clone: B6Ng01-055F07, 5' end.DH877811|Mus musculus domesticus DNA, BAC clone: B6Ng01-055F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,527,429 - 122,527,959)(122,666,987 - 122,667,392)
sequence
ctagtaattaaaaggtttggactggatttaaatccagtagggctgtattt
aaaacactgagctttctatttcttttgttgttgttgttgtttgtttgttt
gtttttcgagacagggtttctctgtgtagccctggctgtcctggaactca
ctctgtagaccaggctggcctcgaactcagaaatcggcctgcctctgcct
cccgagtgctgggattaaaggcgtgcgccaccacgcccggctgagctttc
tatttctatttcctctccaggtgttgtcatttgttctctcttccagttgc
agctttgaagtcttttattttcatagtctcatcaaatatgaattactatt
tgccacacctggtggcacgctccctagataccatggcatagaagccagtt
gggcacgctggtctcatgctaggaggggaggggaaatgggcaccttaggt
ggagtctgccaagatgcaggtgtgcacgtattattggtgcctttattctg
gggtgtgaagggggaggtggaagga
caggacagcaagggctctacagaaaaatcccgtctaaaaaaatttatttt
atggttttgtgggtttttttttttttttcgagatagtcagtcagtgctgt
taaccacctactgagccatctcttcagccccttttcttacctttttactc
cccctttgtttgtttgtttcaaattaattttcattctttctttttcctat
tattttattctctcttcccactccccttctttattttaaatttattttca
ggggctggagagatgatctcaaaggattgattgactgctctgccagaggt
cctgagttcaattcccagcaaccacatggtggctcacaaccatctgtcat
gggatctgatgccctcttctggtgtgtctgaaaacagctacagtgtatat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_122527429_122527959
seq2: B6Ng01-055F07.b_46_576

seq1  GAATTCCTAGTAATTAAAAGGTTTGGACTGGATTTAAATCCAGTAGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTAATTAAAAGGTTTGGACTGGATTTAAATCCAGTAGGGCT  50

seq1  GTATTTAAAACACTGAGCTTTCTATTTCTTTTGTTGTTGTTGTTGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAAACACTGAGCTTTCTATTTCTTTTGTTGTTGTTGTTGTTTGT  100

seq1  TTGTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  150

seq1  AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCT  200

seq1  CTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTGA  250

seq1  GCTTTCTATTTCTATTTCCTCTCCAGGTGTTGTCATTTGTTCTCTCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTATTTCTATTTCCTCTCCAGGTGTTGTCATTTGTTCTCTCTTCC  300

seq1  AGTTGCAGCTTTGAAGTCTTTTATTTTCATAGTCTCATCAAATATGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAGCTTTGAAGTCTTTTATTTTCATAGTCTCATCAAATATGAATT  350

seq1  ACTATTTGCCACACCTGGTGGCACGCTCCCTAGATACCATGGCATAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGCCACACCTGGTGGCACGCTCCCTAGATACCATGGCATAGAAG  400

seq1  CCAGTTGGGCACGCTGGTCTCATGCTAGGAGGGGAGGGGAAATGGGCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGGGCACGCTGGTCTCATGCTAGGAGGGGAGGGGAAATGGGCACC  450

seq1  TTAGGTGGAGTCTGCCAAGATGCAGGTGTGCACGTATTATTGGTGCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGGAGTCTGCCAAGATGCAGGTGTGCACGTATTATTGGTGCCTTT  500

seq1  ATTCTGGGGTGTGAAGGGGGAGGTGGAAGGA  531
      |||||||||||||||||||||||||||||||
seq2  ATTCTGGGGTGTGAAGGGGGAGGTGGAAGGA  531

seq1: chr4_122666987_122667392
seq2: B6Ng01-055F07.g_67_472 (reverse)

seq1  ATATACACTGTAGCTGTTTTCAGACACACCAGAAGAGGGCATCAGATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACTGTAGCTGTTTTCAGACACACCAGAAGAGGGCATCAGATCCC  50

seq1  ATGACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGG  100

seq1  ACCTCTGGCAGAGCAGTCAATCAATCCTCTGAGATCATCTCTCCAGCCCC  150
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCTCTGGCAGAGCAGTCAATCAATCCTTTGAGATCATCTCTCCAGCCCC  150

seq1  TGAAAATAAATTTAAAATAAAGAAGGGGAGTGGGAAGAGAGAATAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAAATTTAAAATAAAGAAGGGGAGTGGGAAGAGAGAATAAAATA  200

seq1  ATAGGAAAAAGAAAGAATGAAAATTAATTTGAAACAAACAAACAAAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAAAGAAAGAATGAAAATTAATTTGAAACAAACAAACAAAGGGG  250

seq1  GAGTAAAAAGGTAAGAAAAGGGGCTGAAGAGATGGCTCAGTAGGTGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAAAGGTAAGAAAAGGGGCTGAAGAGATGGCTCAGTAGGTGGTTA  300

seq1  ACAGCACTGACTGACTATCTCGAAAAAAAAAAAAAAACCCACAAAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTGACTGACTATCTCGAAAAAAAAAAAAAAACCCACAAAACCAT  350

seq1  AAAATAAATTTTTTTAGACGGGATTTTTCTGTAGAGCCCTTGCTGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATTTTTTTAGACGGGATTTTTCTGTAGAGCCCTTGCTGTCCTG  400

seq1  GAATTC  406
      ||||||
seq2  GAATTC  406