BAC Information

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BAC

Clone NameB6Ng01-055I12
Chromosome4 (Build37)17 (Build37)
Map Location 84,287,316 - 84,288,44756,883,294 - 56,883,611
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930473A06Rik, LOC668010, Bnc2
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2, A930009N24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055I12.bB6Ng01-055I12.g
ACCDH877950DH877951
length1,11597
definitionDH877950|Mus musculus domesticus DNA, BAC clone: B6Ng01-055I12, 5' end.DH877951|Mus musculus domesticus DNA, BAC clone: B6Ng01-055I12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,287,316 - 84,288,447)(56,883,294 - 56,883,611)
sequence
gaattcctcaaaacccccagataggaagcaggggccaccaaatgtagttt
tgtggttagggcagacaaatttgaagggcctttagctgaggtcagatgga
taaagagaaatgaagtcacctcacacggagggcatggtgctcttgaggtg
aggatgcaggctgtcacaggtgatgcagagagaatgagttatgattggtg
agtaagctggggctgtccctcgatgggaggtgcctggaggttttcagcag
aattttgactcagaccattctttctgttttaaagaacatggccattgtgt
cagtccctctgaagtggtcctcctggatccagggatatcacttgtcccat
gtgcaagaacaatgattccttatggaaggaagccaagcacccagcaattt
ctaacatgccacggatcagggaggggcctacagggacaatgacattgaaa
acccagagtagaaacatgttccttgttcataattaagattaaaggaacac
atagtgagtaggtaaagtcagccattactgctctgaggacactaactgac
tccagtattgtaacttctcactctggcttcctcttggcatatcagcacct
gcagtcacatgtcccaggagccagggcaacaaagagttgagttaaactca
aagtgggcgactgccttccttcttaatagtctaagtgagtgctttaggag
cagaaggttgagactgtcagggaggtgtttggagttggttgttgctcttg
ccattcatttgtaggcagagggcatctgagttagaattcaccatgtgaga
aactggacagttgccattcgaagatagggagagaagttgccagtagcaga
gagagggtggagcactgtttgccttcttttcttcagacacatagtagggt
catgttgggcaaatgaccaaccattccttagcctgattccttgtttgtgt
gagagatatttgaacaggtctcaagttttgttcagcgtttcttccattta
aattctatatgggaagattaaattgagaattattggaaatatttttctta
gaaattagtatgcttgcttgtcttaaggtttcaagatctagctccttgtt
tattagtcaggccat
taggacagtcagggctatacagagataccctgtctcgaaagaaagaaaga
aagaaagaaagaaagagagagagagagagagagagagagagagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_84287316_84288447
seq2: B6Ng01-055I12.b_50_1164 (reverse)

seq1  ATGGCCTTGACTATAAAACAAGTGAGCTAGAATCTTTGGAACCCTTAAGA  50
      |||||| ||||||  ||||||| ||||||| |||||  ||| ||||||||
seq2  ATGGCC-TGACTAATAAACAAG-GAGCTAG-ATCTT--GAAACCTTAAGA  45

seq1  CAAAGCATAGCAATACTAATTTCTAAGAAAAATATTTTCAATAATTCCTC  100
      | ||||| ||| ||||||||||||||||||||||||| |||||||| |||
seq2  C-AAGCA-AGC-ATACTAATTTCTAAGAAAAATATTTCCAATAATT-CTC  91

seq1  AATTTTAAATACTTCCCATATAGAATTTAAATGGAAGAAAACGCTGAACA  150
      |||||  ||| |||||||||||||||||||||||||| ||||||||||||
seq2  AATTT--AAT-CTTCCCATATAGAATTTAAATGGAAG-AAACGCTGAACA  137

seq1  AAACTTGAGACCTTGTTCAAATATCTTCTCCACACAAACAAGGAATCAGG  200
      |||||||||||| |||||||||||| ||| ||||||||||||||||||||
seq2  AAACTTGAGACC-TGTTCAAATATC-TCT-CACACAAACAAGGAATCAGG  184

seq1  CTTAAGGAATGGTTGGTCATTTGCCCAACATGACCCTACTATGTGTCTGG  250
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  C-TAAGGAATGGTTGGTCATTTGCCCAACATGACCCTACTATGTGTCTGA  233

seq1  AGGAGAGAAGGCAAACAGTGCTCCACCCTCTCTCTGCTACTGGCAACTTC  300
      || | |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAGGCAAACAGTGCTCCACCCTCTCTCTGCTACTGGCAACTTC  283

seq1  TCTCCCTATCTTCGAATGGCAACTGTCCAGTTTCTCACATGGTGAATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTATCTTCGAATGGCAACTGTCCAGTTTCTCACATGGTGAATTCT  333

seq1  AACTCAGATGCCCTCTGCCTACAAATGAATGGCAAGAGCAACAACCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGATGCCCTCTGCCTACAAATGAATGGCAAGAGCAACAACCAACT  383

seq1  CCAAACACCTCCCTGACAGTCTCAACCTTCTGCTCCTAAAGCACTCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACACCTCCCTGACAGTCTCAACCTTCTGCTCCTAAAGCACTCACTT  433

seq1  AGACTATTAAGAAGGAAGGCAGTCGCCCACTTTGAGTTTAACTCAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATTAAGAAGGAAGGCAGTCGCCCACTTTGAGTTTAACTCAACTCT  483

seq1  TTGTTGCCCTGGCTCCTGGGACATGTGACTGCAGGTGCTGATATGCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCCTGGCTCCTGGGACATGTGACTGCAGGTGCTGATATGCCAAG  533

seq1  AGGAAGCCAGAGTGAGAAGTTACAATACTGGAGTCAGTTAGTGTCCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCAGAGTGAGAAGTTACAATACTGGAGTCAGTTAGTGTCCTCAG  583

seq1  AGCAGTAATGGCTGACTTTACCTACTCACTATGTGTTCCTTTAATCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAATGGCTGACTTTACCTACTCACTATGTGTTCCTTTAATCTTAA  633

seq1  TTATGAACAAGGAACATGTTTCTACTCTGGGTTTTCAATGTCATTGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAACAAGGAACATGTTTCTACTCTGGGTTTTCAATGTCATTGTCCC  683

seq1  TGTAGGCCCCTCCCTGATCCGTGGCATGTTAGAAATTGCTGGGTGCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCCCCTCCCTGATCCGTGGCATGTTAGAAATTGCTGGGTGCTTGG  733

seq1  CTTCCTTCCATAAGGAATCATTGTTCTTGCACATGGGACAAGTGATATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCATAAGGAATCATTGTTCTTGCACATGGGACAAGTGATATCC  783

seq1  CTGGATCCAGGAGGACCACTTCAGAGGGACTGACACAATGGCCATGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCCAGGAGGACCACTTCAGAGGGACTGACACAATGGCCATGTTCT  833

seq1  TTAAAACAGAAAGAATGGTCTGAGTCAAAATTCTGCTGAAAACCTCCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAGAAAGAATGGTCTGAGTCAAAATTCTGCTGAAAACCTCCAGG  883

seq1  CACCTCCCATCGAGGGACAGCCCCAGCTTACTCACCAATCATAACTCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCCATCGAGGGACAGCCCCAGCTTACTCACCAATCATAACTCATT  933

seq1  CTCTCTGCATCACCTGTGACAGCCTGCATCCTCACCTCAAGAGCACCATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCATCACCTGTGACAGCCTGCATCCTCACCTCAAGAGCACCATG  983

seq1  CCCTCCGTGTGAGGTGACTTCATTTCTCTTTATCCATCTGACCTCAGCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCGTGTGAGGTGACTTCATTTCTCTTTATCCATCTGACCTCAGCTA  1033

seq1  AAGGCCCTTCAAATTTGTCTGCCCTAACCACAAAACTACATTTGGTGGCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTTCAAATTTGTCTGCCCTAACCACAAAACTACATTTGGTGGCC  1083

seq1  CCTGCTTCCTATCTGGGGGTTTTGAGGAATTC  1132
      ||||||||||||||||||||||||||||||||
seq2  CCTGCTTCCTATCTGGGGGTTTTGAGGAATTC  1115

seq1: chr17_56883294_56883611
seq2: B6Ng01-055I12.g_73_168 (reverse)

seq1  TTCTCTCTCTCTCCTCTTCTTTTCTTTCCTTCCTTCCTCCCTTCCTTCCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTTTCTCTCTTTCTCTCTTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTCTCTCTTTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTTTCTTTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  250
              |||||||||||||| ||| ||| ||| ||| |||||||||||
seq2  --------TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCT  42

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCGAGACAGGGTTTCTCTG  300
      |||||||||||||||||              |||||||||||| ||||||
seq2  TTCTTTCTTTCTTTCTT--------------TCGAGACAGGGTATCTCTG  78

seq1  TGTAGCCCTGGCTGTCCT  318
      | |||||||| |||||||
seq2  TATAGCCCTGACTGTCCT  96