BAC Information

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BAC

Clone NameB6Ng01-056E03
Chromosome4 (Build37)
Map Location 146,895,872 - 146,897,008
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671
Downstream geneLOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056E03.bB6Ng01-056E03.g
ACCDH878478DH878479
length1,2591,103
definitionDH878478|Mus musculus domesticus DNA, BAC clone: B6Ng01-056E03, 5' end.DH878479|Mus musculus domesticus DNA, BAC clone: B6Ng01-056E03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattcaggagagaaaccttacaaatgtagtgaatgcgacaaatgc
tttactgacaaaggcagtctgagagttcatcagagaattcatacaggaga
gaaaccgtaccaatgcagtgagtgtgacaaatgctttactgacaaaagca
gtcttagagttcatcatagaattcatgcaggagagaaaccttacaaatgt
agtgaatgcgacaaatgctttactgacaaaggctatctgagagttcatca
tagaattcatgcaggagagaaatcttacaaatgtagtgaatgtgacaaat
gctttactcacaaaggctctctgagagttcatcatagaattcatgcagga
gagaaaccttataaatgcagtgaatgtgacaaatgctttaccggaaaatc
acatcttagtattcatcagagaattcatacaggagagaaactgtacaaat
gcagtgaatgtgacaaatgctttacccaacaatgccatcttagtattcat
cagaaaattcattcagaagagaaccttacaaatgcaatgaatgcgacaaa
tgctttactgacaaacacagtctgagaaggcatcagataattcatacagg
agagaaaccttacaaatgtaatgaatgtgacaaatcctttactgaaaatg
gctgtctgagaattcatcagagaattcatacaggagagaaaccttacaaa
tgtagtgaatgtgacaaatgctttactaaaaaatccagtttgaggattca
tcagagatttcatacaggagagaaaccttacaaatgtagtgaatgtgaca
aatgttttattcaaaaatgcagtctgataattcatcagagaattcataca
ggagagaaaccttacaaatgtagtgaatgtgacaaagctttactgagaaa
gtcagatggcatcagagaactcatacaggggagaattcttacagatgtat
tgaatgtgacaaatgtttgcccagaaatcctatcttgttttatcacagaa
atcatacatcaagaagctacaatgtagtcaatgtgacaaatgattttccc
acaactagtctgagatgcatcgagatcaaaagtagagaaatttacaaaat
gcattgatgtgataatgcttactaataggcgactggaaataatcgatatt
ttatcattaaaaaactccagattgtagtgtaatgcgtatccaactgtcgc
aatacaacttcacgtagacacttatgatagagtgagaaattctttacgac
gaagaataa
gaattcaactttaagaaggaaacacctgtacttggcaaaagacttttgag
gaagccacaccttcatcttcactgtgcacatatgattgagacaattatta
ccaagaaatttcatttttaaattatactgtgcttacttgttcctaaaata
aaccatactgggatcagaatcttgaagcttcagtcagcattggccactga
gtctacagggaaaacttatagtttacttcccagttttaataattcagaaa
ctccttagtttactcaaactcagaacataaatatccaaccagagatattt
ctgatcctgaaaatcctttccccccattcccccccaaataaaaccctttg
agaagcctgcctctcactcatttctcttctgcttctcacctgagcagagg
cagtctccctccagtgttatcccattaaatctcttgtgtgtagttaaatg
ttccatggggcattgtggtatatcatgacttctgactgccaggagacctt
ttacttcagagctattcacatattcactgggatggatttatccctgagtg
ctgcaagaatttcattgacaataactcacaacacacccacaactagtgct
gaaatacttatagagtggtattgaacatagatttcttttggtctcatgga
ttgttattctaccagacctagggtttgcagagaccgccatgcttgtatca
cttaacaagtaaacatcaatcatagtctttcattgtgacaaatgaactca
gttttgagcacaaactttcttctcctttgaatttttagctttttgatgtt
tttcatttttaatgatccatagaggatatactttatcagcagccaggaaa
atgtttcacagaaaaatgagaaaagaccagaaatttgaaatagaatttgt
gagatacaagtactaatgcctacacatgaatatatgatgatgttcatagt
gtgattaatttaagtaaagaacactctgaaattgagaatcatgatcattt
ggccaaagtttgggaaaaattttcctagttttgcactacaaacatgttgt
tcacataaaactgacaagtgtgagctgtgattcatgagccaagaaaagaa
gat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146895872_146897008
seq2: B6Ng01-056E03.g_68_1170 (reverse)

seq1  ATCTTCTCTTTCTTTGGCTCCATGATATTCACAGGCCATTCACACTCAGT  50
      ||||||| |||| |||||| ||||  | ||||||     |||||||  ||
seq2  ATCTTCT-TTTC-TTGGCT-CATG--AATCACAG----CTCACACT-TGT  40

seq1  CAGTTTTATAGCGAAGCAAACCATGTTTGTAGGTGCATAGACTAGGATAT  100
      ||||||||| | ||| |||  |||||||||| ||||| | ||||||| | 
seq2  CAGTTTTAT-GTGAA-CAA--CATGTTTGTA-GTGCA-AAACTAGGAAAA  84

seq1  TTTTTCCCAAACTTTTGGCCAAATTGATCATGGTTCTCAATTTCAGAGTG  150
      |||||||||||| |||||||||| |||||||| |||||||||||||||||
seq2  TTTTTCCCAAAC-TTTGGCCAAA-TGATCATGATTCTCAATTTCAGAGTG  132

seq1  TTCTTTTACTGAAATTTATTCACACTATGAACATCATCATTAATATTTCA  200
      ||| |||||| ||| ||| |||||||||||||||||||||  ||| ||||
seq2  TTC-TTTACTTAAA-TTAATCACACTATGAACATCATCAT--ATA-TTCA  177

seq1  TGTGTAGGCATTAGTACTTGTATCTCACAAATTCTATTTTCAAATTTCTG  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTGTAGGCATTAGTACTTGTATCTCACAAATTCTA-TTTCAAATTTCTG  226

seq1  GTCTTTTCTCATTTTTCTGTGAAACATTTTCCTGGCTGCTGATAAAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCTCATTTTTCTGTGAAACATTTTCCTGGCTGCTGATAAAGTAT  276

seq1  ATCCTCTATGGATCATTAAAAATGAAAAACATCAAAAAGCTAAAAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTATGGATCATTAAAAATGAAAAACATCAAAAAGCTAAAAATTCA  326

seq1  AAGGAGAAGAAAGTTTGTGCTCAAAACTGAGTTCATTTGTCACAGTGAAA  400
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGGAGAAGAAAGTTTGTGCTCAAAACTGAGTTCATTTGTCACAATGAAA  376

seq1  GACTATGATTGATGTTTACTGGTTAAGTGATACAAGCATGGCGGTCTCTG  450
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GACTATGATTGATGTTTACTTGTTAAGTGATACAAGCATGGCGGTCTCTG  426

seq1  CAAACCCTAGGTCTGGTAGAATAACAATCCATGAGACCAAAAGAAATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCTAGGTCTGGTAGAATAACAATCCATGAGACCAAAAGAAATCTA  476

seq1  TGTTCAATACCACTCTATAAGTATTTCAGCACTAGTTGTGGGTGTGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATACCACTCTATAAGTATTTCAGCACTAGTTGTGGGTGTGTTGT  526

seq1  GAGTTATTGTCAATGAAATTCTTGCAGCACTCAGGGATAAATCCATCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATTGTCAATGAAATTCTTGCAGCACTCAGGGATAAATCCATCCCA  576

seq1  GTGAATATGTGAATAGCTCTGAAGTAAAAGGTCTCCTGGCAGTCAGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATGTGAATAGCTCTGAAGTAAAAGGTCTCCTGGCAGTCAGAAGT  626

seq1  CATGATATACCACAATGCCCCATGGAACATTTAACCACACAC-AGAGGTT  699
      ||||||||||||||||||||||||||||||||||| |||||| |||| ||
seq2  CATGATATACCACAATGCCCCATGGAACATTTAACTACACACAAGAGATT  676

seq1  TAATGGGATAACACTGGAGGGAGGCTGCCTCTGCTCAGGTGAGAAGCAGA  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAATGGGATAACACTGGAGGGAGACTGCCTCTGCTCAGGTGAGAAGCAGA  726

seq1  AGAGAAATAAGTGAGAGGCAGGCTTCTCAAAGGGTTTTATTTGGGGGGGG  799
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  AGAGAAATGAGTGAGAGGCAGGCTTCTCAAAGGGTTTTATTT-GGGGGGG  775

seq1  GATGGGGGGAAAGGATTTTCAGGATCAGAAATATCTCTGGTTGGATATTG  849
       ||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AATGGGGGGAAAGGATTTTCAGGATCAGAAATATCTCTGGTTGGATA---  822

seq1  CTGGGGTTTTATGTTCTGAGTTTGAGTAAACTAAGGAGTTTCTGAATTAT  899
             |||||||||||||||||||||||||||||||||||||||||||
seq2  -------TTTATGTTCTGAGTTTGAGTAAACTAAGGAGTTTCTGAATTAT  865

seq1  TAAAACTGGGAAGTAAACTATAAGTTTTCCCTGTAGACTCAGTGGCCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGGGAAGTAAACTATAAGTTTTCCCTGTAGACTCAGTGGCCAAT  915

seq1  GCTGACTGAAGCTTCAAGATTCTGATCCCAGGATGGTTTATTTTAGGAAC  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTGACTGAAGCTTCAAGATTCTGATCCCAGTATGGTTTATTTTAGGAAC  965

seq1  AAGTAAGCACAGTATAATTTCAAAATGAAATTTCTTGGTAATAATTGTCT  1049
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGTAAGCACAGTATAATTTAAAAATGAAATTTCTTGGTAATAATTGTCT  1015

seq1  CAATCATATGTGCACAGTGAAGATAAAGGTGTGGCTTCCTCAAAAGTCTT  1099
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAATCATATGTGCACAGTGAAGATGAAGGTGTGGCTTCCTCAAAAGTCTT  1065

seq1  TTGACAAGTACAGGTGTTTCCTTCTTAAAGTTGAATTC  1137
      ||| ||||||||||||||||||||||||||||||||||
seq2  TTGCCAAGTACAGGTGTTTCCTTCTTAAAGTTGAATTC  1103