BAC Information

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BAC

Clone NameB6Ng01-056F16
Chromosome4 (Build37)
Map Location 23,918,239 - 24,031,487
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC625462, LOC383998, LOC100040464, LOC623873
Downstream geneLOC664973, F730047E07Rik, Klhl32, 1110007M04Rik, C230012O17Rik, Gpr63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056F16.bB6Ng01-056F16.g
ACCDH878536DH878537
length1,0521,086
definitionDH878536|Mus musculus domesticus DNA, BAC clone: B6Ng01-056F16, 5' end.DH878537|Mus musculus domesticus DNA, BAC clone: B6Ng01-056F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,918,239 - 23,919,293)(24,030,395 - 24,031,487)
sequence
gaattcttacctagtaactttaaatgttaacttttaataaacggtaatag
tgactgttaaaacagtattccttttttcaatatgaaagaaaatttattga
agttatctataatggctgaaaatatgaattcttttaaattcctaatattt
gtgttttaataaagggtaatagtgttgttaaaactgtattattcttttta
acatgaaagaaaaattattgaatttatctacaatggctaaaaatatgaat
tcttttaaaattctaatgtatatgagaaagccctgagatagatattattc
tcccatttaaagatgtaaagttgtagaataagaaagatggatattgtata
aaggtcttttggtcttagaagttggggggagtggagaggggctattccaa
agttcttacaaggggtcagactctgaggagttgtcagtgaaaaccctcaa
tgaattcccctttcaaactgaaaagtgtctcctccccaagtctaagccac
tttagcatgttaagcctttctccactgaggcctcagccttcccctcctta
gcttctttctctcctgctcctactcccattctgctttaggcaagatgtcc
tgccactggttgccagaaactcatctggcagatcttccagcaaaccatcc
atagcccaagcttccttgtagaaagagcacactcaaatgaatgtttagta
actttctggtagtatatttgtgctataggtttatgagtgccccatttgac
tttgctaaagtacctaacactttcatatgcatctgcaggtgcctcaaacg
aaacatcaataaacaccaagtttttcaattaaatctaatgtagctaaatg
taaaactatattcttgaatgatatttacctctactggggagccaaaatta
gaaatttattttgtatccctcaaataaggaattgtcatgccaaactatta
gagtattttatactttttcttaaaaggtaaaaacgatggatcgaggatga
agccacaggatcatatagtatccatgacaggaaaaaaaatagcgttactg
at
gaattcccccttttttttttttttttacttgtctcattgcaaaaggacca
agacttgggtctagttgtgaagacacctatataggttttgagatccttac
cttacatggtccatcagctgaaatgatacatttccttagggtcctgccta
tgattcatatcatacagaataatccagggaactaggagcagatacagaaa
aggctattgcagcacaccaggggaagacagacattctatggaccgtttgc
atcagctatagagaagagtaaatatgaatttgtgagctgttatgatatat
cctaaacaattgcaaatgcccatgtactagtactgaaatatctgtggcta
tagttacatcaaaagcaaaattagacctttatattttttcttttttttgt
tactaagagagatttcacagaaaagatatcccctgaattcttaactgcat
ctattatgcatttattgaggttctttaattataatcttcaaagtgtcagc
taaatagattaaagactgccaatattaattttatgtgaatcactattttc
aaatctgtgaagagttttttcctctcccttggaaaacaaaggcagtgatt
ctgcattataatttgacttttgccattttaattctgcttcattatataaa
tacagtgccagctaatttctcaatgttgttattatacagaaaatgtgttg
aaactgttcttttggtttatttcaggcctagatatgtgatcttaatagtt
catgcatagagtttccaggttttaggattttgcaaaatgtattacctccg
caccaccaaaaatgcaaatttcttataaccataaccattaccacaggcta
ttggacaaaacatctatctgcattcagttatgtgctgcgaagttaaagta
cttatttactgacgggtatataatcctctcattgcccctagcacaaaact
gtctcgagctatacagatgtaatgaattaaaacgaccatatgaacctact
gtgaggtggccattttaactgacctctttgtttctcatctctgtcttgga
tagaaggagaagtttcttcctatgactacaaacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_23918239_23919293
seq2: B6Ng01-056F16.b_46_1097

seq1  GAATTCTTACCTAGTAACTTTAAATGTTAACTTTTAATAAACGGTAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACCTAGTAACTTTAAATGTTAACTTTTAATAAACGGTAATAG  50

seq1  TGACTGTTAAAACAGTATTCCTTTTTTCAATATGAAAGAAAATTTATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTAAAACAGTATTCCTTTTTTCAATATGAAAGAAAATTTATTGA  100

seq1  AGTTATCTATAATGGCTGAAAATATGAATTCTTTTAAATTCCTAATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCTATAATGGCTGAAAATATGAATTCTTTTAAATTCCTAATATTT  150

seq1  GTGTTTTAATAAAGGGTAATAGTGTTGTTAAAACTGTATTATTCTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAATAAAGGGTAATAGTGTTGTTAAAACTGTATTATTCTTTTTA  200

seq1  ACATGAAAGAAAAATTATTGAATTTATCTACAATGGCTAAAAATATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAGAAAAATTATTGAATTTATCTACAATGGCTAAAAATATGAAT  250

seq1  TCTTTTAAAATTCTAATGTATATGAGAAAGCCCTGAGATAGATATTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAATTCTAATGTATATGAGAAAGCCCTGAGATAGATATTATTC  300

seq1  TCCCATTTAAAGATGTAAAGTTGTAGAATAAGAAAGATGGATATTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTAAAGATGTAAAGTTGTAGAATAAGAAAGATGGATATTGTATA  350

seq1  AAGGTCTTTTGGTCTTAGAAGTTGGGGGGAGTGGAGAGGGGCTATTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTTTGGTCTTAGAAGTTGGGGGGAGTGGAGAGGGGCTATTCCAA  400

seq1  AGTTCTTACAAGGGGTCAGACTCTGAGGAGTTGTCAGTGAAAACCCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTACAAGGGGTCAGACTCTGAGGAGTTGTCAGTGAAAACCCTCAA  450

seq1  TGAATTCCCCTTTCAAACTGAAAAGTGTCTCCTCCCCAAGTCTAAGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCCCTTTCAAACTGAAAAGTGTCTCCTCCCCAAGTCTAAGCCAC  500

seq1  TTTAGCATGTTAAGCCTTTCTCCACTGAGGCCTCAGCCTTCCCCTCCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATGTTAAGCCTTTCTCCACTGAGGCCTCAGCCTTCCCCTCCTTA  550

seq1  GCTTCTTTCTCTCCTGCTCCTACTCCCATTCTGCTTTAGGCAAGATGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTCTCTCCTGCTCCTACTCCCATTCTGCTTTAGGCAAGATGTCC  600

seq1  TGCCACTGGTTGCCAGAAACTCATCTGGCAGATCTTCCAGCAAACCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGGTTGCCAGAAACTCATCTGGCAGATCTTCCAGCAAACCATCC  650

seq1  ATAGCCCAAGCTTCCTTGTAGAAAGAGCACACTCAAATGAATGTTTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCAAGCTTCCTTGTAGAAAGAGCACACTCAAATGAATGTTTAGTA  700

seq1  ACTTTCTGGTAGTATATTTGTGCTATAGGTTTATGAGTGCCCCA-TTGAC  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTTTCTGGTAGTATATTTGTGCTATAGGTTTATGAGTGCCCCATTTGAC  750

seq1  TTTGCTAAAGTACCTAACAC-TTCATATGCATCTGCAGGTGCCTCAAACG  798
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTGCTAAAGTACCTAACACTTTCATATGCATCTGCAGGTGCCTCAAACG  800

seq1  AAACATCAATAAACACCAAG-TTTTCAATTAAATCTAATGTAGCTAAATG  847
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAACATCAATAAACACCAAGTTTTTCAATTAAATCTAATGTAGCTAAATG  850

seq1  TAAAACTATATTCTTGAATGATATTTACCTCTACT-GGGAGCCAAAATTA  896
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAAACTATATTCTTGAATGATATTTACCTCTACTGGGGAGCCAAAATTA  900

seq1  GAAATTTATTTGGTATCCCTCAAAATAGGAATTGTCATGCCAAACTATTA  946
      ||||||||||| ||||||||||||  ||||||||||||||||||||||||
seq2  GAAATTTATTTTGTATCCCTCAAATAAGGAATTGTCATGCCAAACTATTA  950

seq1  GAGTAATTTTATACCTTTTCCTTTAAAAGGTAAAAACGATGGATCAGAGA  996
      |||| ||||||||| |||||  ||||||||||||||||||||||| ||| 
seq2  GAGT-ATTTTATACTTTTTC--TTAAAAGGTAAAAACGATGGATC-GAGG  996

seq1  ATTGAAAGCCACAGGGATCATATAGTATCCATGACATGAAAAAAAAAATG  1046
      ||   |||||||| |||||||||||||||||||||| ||||||||| | |
seq2  AT--GAAGCCACA-GGATCATATAGTATCCATGACAGGAAAAAAAATA-G  1042

seq1  CG-TACTGAT  1055
      || |||||||
seq2  CGTTACTGAT  1052

seq1: chr4_24030395_24031487
seq2: B6Ng01-056F16.g_68_1153 (reverse)

seq1  GAGGTTTGGTTAGTCATTTAGAAGAAACTTCTCCCTTCTATCCAAAGACA  50
      ||||||||  |||||| |  |||||||||||| |||||||||| ||||||
seq2  GAGGTTTG--TAGTCA-TAGGAAGAAACTTCT-CCTTCTATCC-AAGACA  45

seq1  GAGATGAGAAACAAAGAGGTCAGTTAAAATGGCCCACCTCACAGTAGGTT  100
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGATGAGAAACAAAGAGGTCAGTTAAAATGG-CCACCTCACAGTAGGTT  94

seq1  CATATGGTCGTTTTAATTCATTACATCTGTATAGCTCGAGACAGTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGTCGTTTTAATTCATTACATCTGTATAGCTCGAGACAGTTTTGT  144

seq1  GCTAGGGGCAATGAGAGGATTAATATACCCGTCAGTAAATAAGTACTTTA  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTAGGGGCAATGAGAGGATT-ATATACCCGTCAGTAAATAAGTACTTTA  193

seq1  ACTTCGCAGCACATAACTGAATGCAGATAGATGGTTTGTCCAATAGCCTG  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACTTCGCAGCACATAACTGAATGCAGATAGATGTTTTGTCCAATAGCCTG  243

seq1  TGGTAATGGTTATGGTTATAAGAAATTTGCATTTTTGGTGGTGCGGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATGGTTATGGTTATAAGAAATTTGCATTTTTGGTGGTGCGGAGGT  293

seq1  AATACATTTTGCAAAATCCTAAAACCTGGAAACTCTATGCATGAACTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTTTGCAAAATCCTAAAACCTGGAAACTCTATGCATGAACTATT  343

seq1  AAGATCACATATCTAGGCCTGAAATAAACCAAAAGAACAGTTTCAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCACATATCTAGGCCTGAAATAAACCAAAAGAACAGTTTCAACACA  393

seq1  TTTTCTGTATAATAACAACATTGAGAAATTAGCTGGCACTGTATTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTATAATAACAACATTGAGAAATTAGCTGGCACTGTATTTATAT  443

seq1  AATGAAGCAGAATTAAAATGGCAAAAGTCAAATTATAATGCAGAATCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCAGAATTAAAATGGCAAAAGTCAAATTATAATGCAGAATCACT  493

seq1  GCCTTTGTTTTCCAAGGGAGAGGAAAAAACTCTTCACAGATTTGAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTTTTCCAAGGGAGAGGAAAAAACTCTTCACAGATTTGAAAATA  543

seq1  GTGATTCACATAAAATTAATATTGGCAGTCTTTAATCTATTTAGCTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCACATAAAATTAATATTGGCAGTCTTTAATCTATTTAGCTGACA  593

seq1  CTTTGAAGATTATAATTAAAGAACCTCAATAAATGCATAATAGATGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGATTATAATTAAAGAACCTCAATAAATGCATAATAGATGCAGT  643

seq1  TAAGAATTCAGGGGATATCTTTTCTGTGAAATCTCTCTTAGTAACAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTCAGGGGATATCTTTTCTGTGAAATCTCTCTTAGTAACAAAAA  693

seq1  AAAGAAAAAATATAAAGGTCTAATTTTGCTTTTGATGTAACTATAGCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAATATAAAGGTCTAATTTTGCTTTTGATGTAACTATAGCCAC  743

seq1  AGATATTTCAGTACTAGTACATGGGCATTTGCAATTGTTTAGGATATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTCAGTACTAGTACATGGGCATTTGCAATTGTTTAGGATATATC  793

seq1  ATAACAGCTCACAAATTCATATTTACTCTTCTCTATAGCTGATGCAAACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGCTCACAAATTCATATTTACTCTTCTCTATAGCTGATGCAAACG  843

seq1  GTCCATAGAATGTCTGTCTTCCCCTGGTGTGCTGCAATAGCCTTTTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATAGAATGTCTGTCTTCCCCTGGTGTGCTGCAATAGCCTTTTCTGT  893

seq1  ATCTGCTCCTAGTTCCCTGGATTATTCTGTATGATATGAATCATAGGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCCTAGTTCCCTGGATTATTCTGTATGATATGAATCATAGGCAG  943

seq1  GACCCTAAGGAAATGTATCATTTCAGCTGATGGACCATGTAAGGTAAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAAGGAAATGTATCATTTCAGCTGATGGACCATGTAAGGTAAGGA  993

seq1  TCTCAAAACCTATATAGGTGTCTTCACAACTAGACCCAAGTCTTGGTCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAACCTATATAGGTGTCTTCACAACTAGACCCAAGTCTTGGTCCT  1043

seq1  TTTGCAATGAGACAAGTAAAAAAAAAAAAAAAAGGGGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATGAGACAAGTAAAAAAAAAAAAAAAAGGGGGAATTC  1086