BAC Information

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BAC

Clone NameB6Ng01-056G05
Chromosome4 (Build37)
Map Location 14,741,147 - 14,742,096
singlet/doubletsinglet
Overlap geneOtud6b
Upstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik
Downstream geneLOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64, LOC100040095
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056G05.bB6Ng01-056G05.g
ACCDH878561DH878562
length754943
definitionDH878561|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G05, 5' end.DH878562|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaaattcttaagcaaatggatagatctggaggatatcatcct
gagtgaagtaacccaatcacaaaagtacacacatgatatgcactcactaa
taagtggatattagctcagaaactcagaatgcccaggatacaattcgcaa
aacacatgaaactcaagaagaaggaagatcaaagtgtgaatactttgctc
cttcttagaatggggaacaaaatacccatggaggaagttacagagacaaa
gtttggagctgagacagaaggaaggaccatccagatactgccccacccgg
ggacccatctcataaacaaccaccaaacccagacactattgcatatgcca
gcaagattttgctgacagcaccctgatatagctgtctcctgtgaggttat
gccagtgcctggcaaatacagaagaggatgctctgttatctattggatgg
agcacagggtccccaatgaaggagctagaggaaatacccaaggtgctgaa
ggggtctgcagccctatacgaggaacaacaatatggactaaccagtaccc
cccagagctccctgggactatagtaccaatcaaagaaaacacatggtggg
actcatgttttctcactgcatatgtaacagaggatggcctagttgccaat
caatgggaagagaggcccttggtcttgtgaagattctatgccccagttta
gaggaatgccagtgccaggaatgaggagtggggtggatttggggagctta
tgaa

gaattcttcctggatagtggattgcgtgaagtcaataaatcaatgtattg
acatttttgtataagaaaacaatagaaacttaaacattatttctttgagc
attaatttttaaaatttactgttaaccatgtttaattacatcaaaacatc
tatttaatatttaagcctggtgtctgaggtgttagagaaaggatgaaatg
gcaaatcctaggctcatgttctgacttttcctctgtgccttggatgattc
tccaacttcatgtcctagttctcagacgattgagtaagaccccttgtagt
atgtgaatgagtctgtgaactaagatgccagacgaatgcctctagcatgg
ttactattctgtaggtgattagttgtctttagtggtctgtgcttctgaaa
gaaagaccctttgcactgtttggataggagatgtaaatgctccttaatac
agtgctgtagtaggacctctccaccagagggaaccatccccattgttttt
ctcctgattcagacacagcaaatgtctagtatgccggataaagagacttg
aagtacccttaatgtaaaggttcatcgagtaacatctgattgttttggat
gctttattctgttaaattgagaatttgagacactttaaaaaaacatcatt
tactcattcattgcttatgaatttctgtaaagtacaagttgttttcacac
ttagataaatgtatatttttgatcaaatccaaagctaaaagactatctta
ctcagtgtgtgtgcatgtgctcttgggtgtgtggtcacatgagagccata
atgcacttgtgggatttatcaggggatagctttcaggagctgatgtattt
ctccatatggattcaactagccaggtttgtggcagggccttagcctgcta
ttactctctctggcctattttttggctttgaagacattgatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_14741147_14742096
seq2: B6Ng01-056G05.g_70_1012 (reverse)

seq1  ATATCAATGTCTTCAAAAGCCAAAAAATAGGGCCAGAGAGATGTAATAGC  50
      |||||||||||||| |||||||||||||| ||||||||||| ||||||||
seq2  ATATCAATGTCTTC-AAAGCCAAAAAATA-GGCCAGAGAGA-GTAATAGC  47

seq1  AGGCTAAGGCCCTTGCCACCAACCTGGCTAGTTGAATCCATATGGTAGAA  100
      |||||||||||| |||||| ||||||||||||||||||||||||| ||||
seq2  AGGCTAAGGCCC-TGCCACAAACCTGGCTAGTTGAATCCATATGG-AGAA  95

seq1  ATAACATCAGCTCCTGAAAGCTATCCCCTGATATAATCCCACAAGTGCAT  150
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AT-ACATCAGCTCCTGAAAGCTATCCCCTGATA-AATCCCACAAGTGCAT  143

seq1  TATGGCTCTCATGTGACCACACACCCAAGAGCACATGCACACACACTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTCTCATGTGACCACACACCCAAGAGCACATGCACACACACTGAG  193

seq1  TAAGATAGTCTTTTAGCTTTGGATTTGATCAAAAATATACATTTATCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGTCTTTTAGCTTTGGATTTGATCAAAAATATACATTTATCTAA  243

seq1  GTGTGAAAACAACTTGTACTTTACAGAAATTCATAAGCAATGAATGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAACAACTTGTACTTTACAGAAATTCATAAGCAATGAATGAGTA  293

seq1  AATGATGTTTTTTTAAAGTGTCTCAAATTCTCAATTTAACAGAATAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTTTTTTTAAAGTGTCTCAAATTCTCAATTTAACAGAATAAAGC  343

seq1  ATCCAAAACAATCAGATGTTACTCGATGAACCTTTACATTAAGGGTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAACAATCAGATGTTACTCGATGAACCTTTACATTAAGGGTACTT  393

seq1  CAAGTCTCTTTATCCGGCATACTAGACATTTGCTGTGTCTGAATCAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCTTTATCCGGCATACTAGACATTTGCTGTGTCTGAATCAGGAG  443

seq1  AAAAACAATGGGGATGGTTCCCTCTGGTGGAGAGGTCCTACTACAGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATGGGGATGGTTCCCTCTGGTGGAGAGGTCCTACTACAGCACT  493

seq1  GTATTAAGGAGCATTTACATCTCCTATCCAAACAGTGCAAAGGGTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAGGAGCATTTACATCTCCTATCCAAACAGTGCAAAGGGTCTTTC  543

seq1  TTTCAGAAGCACAGACCACTAAAGACAACTAATCACCTACAGAATAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAGCACAGACCACTAAAGACAACTAATCACCTACAGAATAGTAA  593

seq1  CCATGCTAGAGGCATTCGTCTGGCATCTTAGTTCACAGACTCATTCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTAGAGGCATTCGTCTGGCATCTTAGTTCACAGACTCATTCACAT  643

seq1  ACTACAAGGGGTCTTACTCAATCGTCTGAGAACTAGGACATGAAGTTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAGGGGTCTTACTCAATCGTCTGAGAACTAGGACATGAAGTTGGA  693

seq1  GAATCATCCAAGGCACAGAGGAAAAGTCAGAACATGAGCCTAGGATTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATCCAAGGCACAGAGGAAAAGTCAGAACATGAGCCTAGGATTTGC  743

seq1  CATTTCATCCTTTCTCTAACACCTCAGACACCAGGCTTAAATATTAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATCCTTTCTCTAACACCTCAGACACCAGGCTTAAATATTAAATA  793

seq1  GATGTTTTGATGTAATTAAACATGGTTAACAGTAAATTTTAAAAATTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTGATGTAATTAAACATGGTTAACAGTAAATTTTAAAAATTAAT  843

seq1  GCTCAAAGAAATAATGTTTAAGTTTCTATTGTTTTCTTATACAAAAATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGAAATAATGTTTAAGTTTCTATTGTTTTCTTATACAAAAATGT  893

seq1  CAATACATTGATTTATTGACTTCACGCAATCCACTATCCAGGAAGAATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATTGATTTATTGACTTCACGCAATCCACTATCCAGGAAGAATTC  943


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