BAC Information

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BAC

Clone NameB6Ng01-056H15
Chromosome4 (Build37)
Map Location 99,010,558 - 99,217,532
singlet/doubletdoublet
Overlap geneLOC665212
Upstream geneTm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c
Downstream geneLOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2, Ror1, Ube2u
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056H15.bB6Ng01-056H15.g
ACCDH878620DH878621
length1,0041,076
definitionDH878620|Mus musculus domesticus DNA, BAC clone: B6Ng01-056H15, 5' end.DH878621|Mus musculus domesticus DNA, BAC clone: B6Ng01-056H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,216,526 - 99,217,532)(99,010,558 - 99,011,640)
sequence
gaattcacggtgcgttcataggatggctgctggcacctctagctcctgcc
ctggctgcttgtcacgcaggagtagaagtccactatcttacacataggaa
gacgagtgttctactatgaattacacctccagccccaaacaatgatatcc
tagttaattcttacagttaataaaagtaaagggtaaattataagacaacc
attatacatggttttggggtaaagtaattttaacctgattgtcagcattc
aaacattgacagaattcccaatctggcctccagattgttttgaagaatca
gagctagaaatagtggacttccattccagtactttgtacaaagcttcctt
caacaatggactatgacatgtaagtacacgtcaaataaaccctttcctac
ccagtttgcttttggtcatggtgtttcatcacagcagtagtaaccctatc
taagatggccttccttattttgtctagtttattgtgtctttaaacatact
tataatcattgttttgagttctctgtctgggatttcacctaactcagtcc
cactggacgccattactgttgggttaatgatctttggatgagttgcattg
tcttgtttttgtgtgtttcttatattagagtttatacatctgctgttatt
tctttggtttatttcttatttagccatattctttcagttaacttatttgc
agtgttcaagtgggactcgcatgtggtagtttcagtgtgtagttcagaaa
gtcaatctaggagttcggtgccaagtgtaaattctatattattccctgag
tatgagaaccgagaggcaggcacagttgcttgatattagcactatgttga
tgccataccagccgtttaattacagtagcccatttgacatgactagaaca
ccattgaaggagagtgtgaagtagactcaggttcagctactagattagta
tggcttaggtgaggtggacgaggagaggggtaagttgttagattgacttt
gaaa
gaattccagcgtctgggctttccttacatggaggaagtggctctgggcac
agtgtcctcagtggtcagcatcagtggcgcctgagcgcttcgaccggctc
tctgctgatgcagttagatccctttctagagactgtttcaaccccttact
tcccagaagtaaaaaataggtaagaggggcttccgctgggtctccaggtc
tcagttggcacggtctggggctcaccctcctgactcaccccgtcttcacc
gcgttgatccggttccctccacagctgagcgaggcagcagaaaggactgg
gtctgttcaccgagcatgtttgccgtggcgaacctgtgggcagcctcgcg
gcctttggggtggccatacagaatctaacaggagactccattttcaaaca
acagtttaattacgtaccttactctcgctcttaaaagacaggaaagagag
aaacatagttcccacacaaaccagtttatacttaacaaaagttttaatgt
gatccagaaaatggggtcttaaagaatggttccttccctggggcccggga
agaccaaggtttcgctaaaatcaccttcctcttggtagcacccgcggctt
cctcagagtatctcacacgccttcatgcgctgtggccagtccatggcttc
ttcagagtatctcctgtgcacttaagtgctgtgatggggtccagttttta
atgtttaagtcatggaaatctccatcagatgaaatcttacttgaaccaca
atgtacaaaatcagagaaagtcttggggggagcctagaaaggggtttcca
ggccctcccttagaatgcccttccctcccacccctgctactctcagacag
ccaacaggctaggccagggtgctcttggtttcctctctcactggtcccca
ctctcctcgctcttgttctcagtctccttctttctctccaaatcccatgg
tgcttctgagaggtagaccctgttctactacacctgcacagacgaagtgg
ctgagtttcgttcttcttctcagcggttcattttctgctggtccattaga
ctggaccgaattggggatatctgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_99216526_99217532
seq2: B6Ng01-056H15.b_41_1044 (reverse)

seq1  TTTCAAAGTCAATCTAACACTTAACCCCTCTCCTCGTCCACCTCACCTAA  50
      |||||||||||||||||||  | |||||||||||||||||||||||||||
seq2  TTTCAAAGTCAATCTAACAACTTACCCCTCTCCTCGTCCACCTCACCTAA  50

seq1  GCCATACCTAATCTTAGTAGCTGAAACCTGAGTCTACTTCACACTCTCCT  100
      |||||| |||||| ||||||||| ||||||||||||||||||||||||||
seq2  GCCATA-CTAATC-TAGTAGCTG-AACCTGAGTCTACTTCACACTCTCCT  97

seq1  TCAATGGTTGTTCTAGTCATGTCAAAGTGGGCTACTGTAATTAAACGGCT  150
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  TCAATGG-TGTTCTAGTCATGTCAAA-TGGGCTACTGTAATTAAACGGCT  145

seq1  GGTATGGCATCAACATAGTGCTAATATCAAGCAACTGTGCCTGCCTCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGCATCAACATAGTGCTAATATCAAGCAACTGTGCCTGCCTCTCG  195

seq1  GTTCTCATACTCAGGGAATAATATAGAATTTACACTTGGCACCGAACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATACTCAGGGAATAATATAGAATTTACACTTGGCACCGAACTCC  245

seq1  TAGATTGACTTTCTGAACTACACACTG-AACTACCACATGCGAGTCCCAC  299
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAGATTGACTTTCTGAACTACACACTGAAACTACCACATGCGAGTCCCAC  295

seq1  TTGAACACTGCAAATAAGTTAACTGAAAGAATATGGCTAAATAAG-AATA  348
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGAACACTGCAAATAAGTTAACTGAAAGAATATGGCTAAATAAGAAATA  345

seq1  AACCAAAGAAATAACAGCAGATGTATAAACTCTAATATAAGAAACACACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGAAATAACAGCAGATGTATAAACTCTAATATAAGAAACACACA  395

seq1  AAAACAAGACAATGCAACTCATCCAAAGATCATTAACCCAACAGTAATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGACAATGCAACTCATCCAAAGATCATTAACCCAACAGTAATGG  445

seq1  CGTCCAGTGGGACTGAGTTAGGTGAAATCCCAGACAGAGAACTCAAAACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCAGTGGGACTGAGTTAGGTGAAATCCCAGACAGAGAACTCAAAACA  495

seq1  ATGATTATAAGTATGTTTAAAGACACAATAAACTAGACAAAATAAGGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATAAGTATGTTTAAAGACACAATAAACTAGACAAAATAAGGAAG  545

seq1  GCCATCTTAGATAGGGTTACTACTGCTGTGATGAAACACCATGACCAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTAGATAGGGTTACTACTGCTGTGATGAAACACCATGACCAAAA  595

seq1  GCAAACTGGGTAGGAAAGGGTTTATTTGACGTGTACTTACATGTCATAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGGGTAGGAAAGGGTTTATTTGACGTGTACTTACATGTCATAGT  645

seq1  CCATTGTTGAAGGAAGCTTTGTACAAAGTACTGGAATGGAAGTCCACTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTGAAGGAAGCTTTGTACAAAGTACTGGAATGGAAGTCCACTAT  695

seq1  TTCTAGCTCTGATTCTTCAAAACAATCTGGAGGCCAGATTGGGAATTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTCTGATTCTTCAAAACAATCTGGAGGCCAGATTGGGAATTCTG  745

seq1  TCAATGTTTGAATGCTGACAATCAGGTTAAAATTACTTTACCCCAAAACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTTGAATGCTGACAATCAGGTTAAAATTACTTTACCCCAAAACC  795

seq1  ATGTATAATGGTTGTCTTATAATTTACCCTTTACTTTTATTAACTGTAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAATGGTTGTCTTATAATTTACCCTTTACTTTTATTAACTGTAAG  845

seq1  AATTAACTAGGATATCATTGTTTGGGGCTGGAGGTGTAATTCATAGTAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTAGGATATCATTGTTTGGGGCTGGAGGTGTAATTCATAGTAGA  895

seq1  ACACTCGTCTTCCTATGTGTAAGATAGTGGACTTCTACTCCTGCGTGACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCGTCTTCCTATGTGTAAGATAGTGGACTTCTACTCCTGCGTGACA  945

seq1  AGCAGCCAGGGCAGGAGCTAGAGGTGCCAGCAGCCATCCTATGAACGCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCAGGGCAGGAGCTAGAGGTGCCAGCAGCCATCCTATGAACGCAC  995

seq1  CGTGAATTC  1007
      |||||||||
seq2  CGTGAATTC  1004

seq1: chr4_99010558_99011640
seq2: B6Ng01-056H15.g_69_1144

seq1  GAATTCCAGCGTCTGGGCTTTCCTTACATGGAGGAAGTGGCTCTGGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCGTCTGGGCTTTCCTTACATGGAGGAAGTGGCTCTGGGCAC  50

seq1  AGTGTCCTCAGTGGTCAGCATCAGTGGCGCCTGAGCGCTTCGACCGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTCAGTGGTCAGCATCAGTGGCGCCTGAGCGCTTCGACCGGCTC  100

seq1  TCTGCTGATGCAGTTAGATCCCTTTCTAGAGACTGTTTCAACCCCTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGATGCAGTTAGATCCCTTTCTAGAGACTGTTTCAACCCCTTACT  150

seq1  TCCCAGAAGTAAAAAATAGGTAAGAGGGGCTTCCGCTGGGTCTCCAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAGTAAAAAATAGGTAAGAGGGGCTTCCGCTGGGTCTCCAGGTC  200

seq1  TCAGTTGGCACGGTCTGGGGCTCACCCTCCTGACTCACCCCGTCTTCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGGCACGGTCTGGGGCTCACCCTCCTGACTCACCCCGTCTTCACC  250

seq1  GCGTTGATCCGGTTCCCTCCACAGCTGAGCGAGGCAGCAGAAAGGACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGATCCGGTTCCCTCCACAGCTGAGCGAGGCAGCAGAAAGGACTGG  300

seq1  GTCTGTTCACCGAGCATGTTTGCCGTGGCGAACCTGTGGGCAGCCTCGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTCACCGAGCATGTTTGCCGTGGCGAACCTGTGGGCAGCCTCGCG  350

seq1  GCCTTTGGGGTGGCCATACAGAATCTAACAGGAGACTCCATTTTCAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGGGTGGCCATACAGAATCTAACAGGAGACTCCATTTTCAAACA  400

seq1  ACAGTTTAATTACGTACCTTACTCTCGCTCTTAAAAGACAGGAAAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTAATTACGTACCTTACTCTCGCTCTTAAAAGACAGGAAAGAGAG  450

seq1  AAACATAGTTCCCACACAAACCAGTTTATACTTAACAAAAGTTTTAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGTTCCCACACAAACCAGTTTATACTTAACAAAAGTTTTAATGT  500

seq1  GATCCAGAAAATGGGGTCTTAAAGAATGGTTCCTTCCCTGGGGCCCGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGAAAATGGGGTCTTAAAGAATGGTTCCTTCCCTGGGGCCCGGGA  550

seq1  AGACCAAGGTTTCGCTAAAATCACCTTCCTCTTGGTAGCACCCGCGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAGGTTTCGCTAAAATCACCTTCCTCTTGGTAGCACCCGCGGCTT  600

seq1  CCTCAGAGTATCTCACACGCCTTCATGCGCTGTGGCCAGTCCATGGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGTATCTCACACGCCTTCATGCGCTGTGGCCAGTCCATGGCTTC  650

seq1  TTCAGAGTATCTCCTGTGCACTTAAGTGCTGTGAT-GGGTCCAG-TTTTA  698
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  TTCAGAGTATCTCCTGTGCACTTAAGTGCTGTGATGGGGTCCAGTTTTTA  700

seq1  ATGTTTAAGTCATGGAAATCTCCATCAGATGAAATCTTACTTGAAACCAC  748
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGTTTAAGTCATGGAAATCTCCATCAGATGAAATCTTACTTG-AACCAC  749

seq1  AATGTACAAAATCAGAGAAAGTCTTGGGGGGAGCCTAGAAAGGGGTTTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACAAAATCAGAGAAAGTCTTGGGGGGAGCCTAGAAAGGGGTTTCC  799

seq1  AGGCCCTCCCTTAGAATGCCCTTCCCTCCCACCCCTGCTACTCTCAGACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTCCCTTAGAATGCCCTTCCCTCCCACCCCTGCTACTCTCAGACA  849

seq1  GCCAACAGGCTAGGCCAGGGTGCTCTTGGTTTCCTCTCTCACT-GTCCCC  897
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCCAACAGGCTAGGCCAGGGTGCTCTTGGTTTCCTCTCTCACTGGTCCCC  899

seq1  ACTCTCCTCGCTCTTGTTCTCAGTCTCCTTCTTTCTCTCCAAATCCCATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTCGCTCTTGTTCTCAGTCTCCTTCTTTCTCTCCAAATCCCATG  949

seq1  GTGCCTCTGAGAAGGTAGAACCCTGTTCTACCTACCACCTGCACAGACGA  997
      |||| |||||| |||||| ||||||||||| ||| |||||||||||||| 
seq2  GTGCTTCTGAG-AGGTAG-ACCCTGTTCTA-CTA-CACCTGCACAGACG-  994

seq1  AAGTGGCTGAGCTCCGCTCTTCTTCCACAGCGAGTTCCATTTTCTTCTGG  1047
      ||||||||||| | || ||||||| | ||||| ||| |||||||| ||||
seq2  AAGTGGCTGAGTTTCGTTCTTCTT-CTCAGCG-GTT-CATTTTCTGCTGG  1041

seq1  TCACATTAGACTGGACCGAGTTGGGAATATCTGTGG  1083
      || |||||||||||||||| ||||| ||||||||||
seq2  TC-CATTAGACTGGACCGAATTGGGGATATCTGTGG  1076