BAC Information

Click to search

BAC

Clone NameB6Ng01-056N09
Chromosome4 (Build37)
Map Location 33,656,614 - 33,807,459
singlet/doubletdoublet
Overlap genenone
Upstream geneBach2, Gja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
Downstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056N09.bB6Ng01-056N09.g
ACCDH878876DH878877
length1,0951,071
definitionDH878876|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N09, 5' end.DH878877|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,656,614 - 33,657,722)(33,806,378 - 33,807,459)
sequence
gaattcaagtcgctaaacaaattgagtgtctaataattgtaagagactat
attttccctagacaaagctctcatagatctatttcaactaactttgtgat
gggtttcctcttcattgccctaattaacacagagatgtaataatgtctta
ggttaaccagggaagggattagaaactacaaacccaggaactattttcac
caggatatggcatcttcaaattttagctctggatcacatatttagaagtt
ggaattggctagataaacaaggatagcagataggtgtcgtgacagagtca
cgttaccaggctctggaaataacgggagaaaatccattcttcctgggtcc
accctgggatgtttgttgtgaaacctcatgaaccaagatagatgacagat
gtgttagaaaagagcccagagaagagagtgctccacagagagtgctctgt
gtcagcagaggagaggcaagctctggtctgtagtgcatggtaaacagaag
gagtttctgctgcctggatcagcaaatgtgaaactagaataattgaaata
ggttttgagagctctactttgaggcaaattctaaaaacatttcttctctc
aatcatttttgaatagatgaactttgttgtcttggggttaggagatgtga
tagccacgtttccccaatgttctcccacatctaggactttaaagatgttc
ctgtctccaaggctaaatgtagctcagatggaatactggttccatcctgt
tgtgaagagactctagccagcctgatcacgcttgctaaaaaccgttagat
ttactttcttacagctaacccttcctttctctttccttatctggtcactt
cctccttcctgaagctgactaccaaggccagctatcaagcattgaagtcc
agcaatcaaaagccccctttgggttactaactatcagctcggttaaaatt
aacactcgtcttttacatgaaattccctttacctttatgaactgccattg
cctatgggcctggctgtctcctctctatcagaagtagtctttgtactctg
gcaaaaattcctccctactcctcatgcctctttctcccctccctt
gaattctttaaaagaatcttttagtaaaacatttccagaagaaagatatg
atttgcctaaaactaggtggcttcctatatctgtttagtttcccttctgc
tcaaagtataactttcatgtacatgcatagttcatgcacatttacagatt
gtatgtgacacaggagaggtatatacacaagtcatatacacacacaggtc
atgtacacacaggtcatatatatgactttctcagcctccatgtcatctat
aaagtaagaggttgagttgaatagtctttgaggaccctttgatgtctaga
atctcatgtttctccgttcttcccctaaagtctttcagtatcaaataagt
gtaatttctaaacagcacaacaatttgttgtggaattgagacaaagtctt
ctcttggaaaagcaatggaggcagtatgaggtaaataagatgactaacat
caacttatgtcacaaagctgccactataaaaaggaagaaagaaacgaaac
tcttgaagtcaccacctaagttagcaatttgagtctgtgatactttctca
gatactatagtgggacctaagagaaatttcatctcaatcatgaaaaagta
aagttggaccatctgtgagctgagcaggtatattgcagatgaaacagaat
tatgaacgttactaagaaaccttcctgggacgctcacactagattgcaag
aaagaagaaacgagatcccaaaaaagccattacaaagtgttacagtaagt
cttgtctctgaagcatgtacaaaaagtgaaaagattacatagaagtaaat
tcttttcatttacttgacttcatttcacagttcctgctaataatatttta
gaatttgctacagagcaactcagatgctattgaacaatcagtaggacttc
atttcaaaaaaaataaaagctttctaattcagcaagtttgccctcccagt
tcagaccctggagtagtgcagccttctctgaaagaagcactgtagtgaag
attcaccagcttgggttcaggaactaatactctaaaggctaagcgaaaaa
cggatggatggagtgagtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_33656614_33657722
seq2: B6Ng01-056N09.b_40_1134

seq1  GAATTCAAGTCGCTAAACAAATTGAGTGTCTAATAATTGTAAGAGACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCGCTAAACAAATTGAGTGTCTAATAATTGTAAGAGACTAT  50

seq1  ATTTTCCCTAGACAAAGCTCTCATAGATCTATTTCAACTAACTTTGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCTAGACAAAGCTCTCATAGATCTATTTCAACTAACTTTGTGAT  100

seq1  GGGTTTCCTCTTCATTGCCCTAATTAACACAGAGATGTAATAATGTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCCTCTTCATTGCCCTAATTAACACAGAGATGTAATAATGTCTTA  150

seq1  GGTTAACCAGGGAAGGGATTAGAAACTACAAACCCAGGAACTATTTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACCAGGGAAGGGATTAGAAACTACAAACCCAGGAACTATTTTCAC  200

seq1  CAGGATATGGCATCTTCAAATTTTAGCTCTGGATCACATATTTAGAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATGGCATCTTCAAATTTTAGCTCTGGATCACATATTTAGAAGTT  250

seq1  GGAATTGGCTAGATAAACAAGGATAGCAGATAGGTGTCGTGACAGAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGGCTAGATAAACAAGGATAGCAGATAGGTGTCGTGACAGAGTCA  300

seq1  CGTTACCAGGCTCTGGAAATAACGGGAGAAAATCCATTCTTCCTGGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACCAGGCTCTGGAAATAACGGGAGAAAATCCATTCTTCCTGGGTCC  350

seq1  ACCCTGGGATGTTTGTTGTGAAACCTCATGAACCAAGATAGATGACAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGATGTTTGTTGTGAAACCTCATGAACCAAGATAGATGACAGAT  400

seq1  GTGTTAGAAAAGAGCCCAGAGAAGAGAGTGCTCCACAGAGAGTGCTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGAAAAGAGCCCAGAGAAGAGAGTGCTCCACAGAGAGTGCTCTGT  450

seq1  GTCAGCAGAGGAGAGGCAAGCTCTGGTCTGTAGTGCATGGTAAACAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGAGGAGAGGCAAGCTCTGGTCTGTAGTGCATGGTAAACAGAAG  500

seq1  GAGTTTCTGCTGCCTGGATCAGCAAATGTGAAACTAGAATAATTGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTGCTGCCTGGATCAGCAAATGTGAAACTAGAATAATTGAAATA  550

seq1  GGTTTTGAGAGCTCTACTTTGAGGCAAATTCTAAAAACATTTCTTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGAGAGCTCTACTTTGAGGCAAATTCTAAAAACATTTCTTCTCTC  600

seq1  AATCATTTTTGAATAGATGAACTTTGTTGTCTTGGGGTTAGGAGATGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTTGAATAGATGAACTTTGTTGTCTTGGGGTTAGGAGATGTGA  650

seq1  TAGCCACGTTTCCCCAATGTTCTCCCACATCTAGGACTTTAAAGATGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACGTTTCCCCAATGTTCTCCCACATCTAGGACTTTAAAGATGTTC  700

seq1  CTGTCTCCAAGGCTAAATGTAGCTCAGATGGAATACTGGTTCCATCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCAAGGCTAAATGTAGCTCAGATGGAATACTGGTTCCATCCTGT  750

seq1  TGTGAAGAGACTCTAGCCAGCCTGATCACGCTTGCTAAAAACCGTTAGA-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTGAAGAGACTCTAGCCAGCCTGATCACGCTTGCTAAAAACCGTTAGAT  800

seq1  TTACTTTCTTACAGCTAACCCTTCCTTTCTCTTCCCTTATCTGGTCACTT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTACTTTCTTACAGCTAACCCTTCCTTTCTCTTTCCTTATCTGGTCACTT  850

seq1  CCTCC-TCCTGAGGCTGACTACCAAGGCCCAGCTATCAAAGCATTGAAGT  898
      ||||| |||||| |||||||||||||| ||||||||| ||||||||||||
seq2  CCTCCTTCCTGAAGCTGACTACCAAGG-CCAGCTATC-AAGCATTGAAGT  898

seq1  CCAGCAATCAAAAGCCCCCTTTGGGTTACCTAACTATCAAGCTCGGTTAA  948
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  CCAGCAATCAAAAGCCCCCTTTGGGTTA-CTAACTATC-AGCTCGGTTAA  946

seq1  AATTAAACACTCGTCTTTTACCATGAGATTCCCCCTTTTACCTTTATGAA  998
      |||| ||||||||||||||| ||||| ||||||   ||||||||||||||
seq2  AATT-AACACTCGTCTTTTA-CATGAAATTCCC---TTTACCTTTATGAA  991

seq1  CTGCCATTTGCCTATGGGCCTGGCCTGTCTCCTCTCTATCCAGAAGTAGT  1048
      |||||| |||||||||||||||| ||||||||||||||| ||||||||| 
seq2  CTGCCA-TTGCCTATGGGCCTGG-CTGTCTCCTCTCTAT-CAGAAGTAG-  1037

seq1  TCTTTGTTCTCTGACAAACACTCCTCCCTCATCTCCCTTGCCTCCTTTCT  1098
      ||||||| ||||| |||| | ||||||||  || | | ||||| ||||||
seq2  TCTTTGTACTCTGGCAAAAATTCCTCCCTACTC-CTCATGCCT-CTTTCT  1085

seq1  CCCCTCTCCTT  1109
      |||||| ||||
seq2  CCCCTC-CCTT  1095

seq1: chr4_33806378_33807459
seq2: B6Ng01-056N09.g_70_1140 (reverse)

seq1  TGCACTCACTCC-TCCATCCGTTTTCTCTGCCTAAGCCTGTTTAGTGGTG  49
      |||||||||||| ||||||||||||   |  || ||||  |||||  || 
seq2  TGCACTCACTCCATCCATCCGTTTT---TCGCTTAGCC--TTTAG-AGTA  44

seq1  TTAGTTCCTGGACCCAGCTTGGTGAGTCTTCACTTCAAGTGCTCCTTTCA  99
      |||||||||| |||||   |||||| |||||||| | |||||| ||||||
seq2  TTAGTTCCTGAACCCAAGCTGGTGAATCTTCACTAC-AGTGCTTCTTTCA  93

seq1  GAGAAGGCTGCACCTACTCCAGGGTCTGATCTTGGGAGGGCAAACTTGCT  149
      |||||||||||| |||||||||||||||| | ||||||||||||||||||
seq2  GAGAAGGCTGCA-CTACTCCAGGGTCTGAAC-TGGGAGGGCAAACTTGCT  141

seq1  GGATTAAGAAGCTTTTATTCTTTTCTGAAATGGAGTCCTAACTGATTTGT  199
      | ||||  ||||||||||| |||| ||||||| |||||| ||||| ||||
seq2  GAATTAGAAAGCTTTTATT-TTTTTTGAAATGAAGTCCT-ACTGA-TTGT  188

seq1  TCAATAGCATCTGAGTTGCTCTGTAGC-AACTCTAAAATATTATTAGCAG  248
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  TCAATAGCATCTGAGTTGCTCTGTAGCAAATTCTAAAATATTATTAGCAG  238

seq1  GAACTGTTGAAATGAAGTCAAGTAAATGAAAAGAATTTACTTCTATGTAA  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTG-TGAAATGAAGTCAAGTAAATGAAAAGAATTTACTTCTATGTAA  287

seq1  TCTTTTCACTTTTTGTACATGCTTCAGAGACAAGACTTACTGTAACACTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCACTTTTTGTACATGCTTCAGAGACAAGACTTACTGTAACACTT  337

seq1  TGTAATGGCTTTTTTGGGATCTCGTTTCTTCTTTCTTGCAATCTAGTGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGCTTTTTTGGGATCTCGTTTCTTCTTTCTTGCAATCTAGTGTG  387

seq1  AGCGTCCCAGGAAGGTTTCTTAGTAACGTTCATAATTCTGTTTCATCTGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCCCAGGAAGGTTTCTTAGTAACGTTCATAATTCTGTTTCATCTGC  437

seq1  AATATACCTGCTCAGCTCACAGATGGTCCAACTTTACTTTTTCATGATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCTGCTCAGCTCACAGATGGTCCAACTTTACTTTTTCATGATTG  487

seq1  AGATGAAATTTCTCTTAGGTCCCACTATAGTATCTGAGAAAGTATCACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAATTTCTCTTAGGTCCCACTATAGTATCTGAGAAAGTATCACAG  537

seq1  ACTCAAATTGCTAACTTAGGTGGTGACTTCAAGAGTTTCGTTTCTTTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATTGCTAACTTAGGTGGTGACTTCAAGAGTTTCGTTTCTTTCTT  587

seq1  CCTTTTTATAGTGGCAGCTTTGTGACATAAGTTGATGTTAGTCATCTTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTATAGTGGCAGCTTTGTGACATAAGTTGATGTTAGTCATCTTAT  637

seq1  TTACCTCATACTGCCTCCATTGCTTTTCCAAGAGAAGACTTTGTCTCAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCATACTGCCTCCATTGCTTTTCCAAGAGAAGACTTTGTCTCAAT  687

seq1  TCCACAACAAATTGTTGTGCTGTTTAGAAATTACACTTATTTGATACTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAACAAATTGTTGTGCTGTTTAGAAATTACACTTATTTGATACTGA  737

seq1  AAGACTTTAGGGGAAGAACGGAGAAACATGAGATTCTAGACATCAAAGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTAGGGGAAGAACGGAGAAACATGAGATTCTAGACATCAAAGGG  787

seq1  TCCTCAAAGACTATTCAACTCAACCTCTTACTTTATAGATGACATGGAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAGACTATTCAACTCAACCTCTTACTTTATAGATGACATGGAGG  837

seq1  CTGAGAAAGTCATATATATGACCTGTGTGTACATGACCTGTGTGTGTATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGTCATATATATGACCTGTGTGTACATGACCTGTGTGTGTATA  887

seq1  TGACTTGTGTATATACCTCTCCTGTGTCACATACAATCTGTAAATGTGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTGTATATACCTCTCCTGTGTCACATACAATCTGTAAATGTGCA  937

seq1  TGAACTATGCATGTACATGAAAGTTATACTTTGAGCAGAAGGGAAACTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTATGCATGTACATGAAAGTTATACTTTGAGCAGAAGGGAAACTAA  987

seq1  ACAGATATAGGAAGCCACCTAGTTTTAGGCAAATCATATCTTTCTTCTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATAGGAAGCCACCTAGTTTTAGGCAAATCATATCTTTCTTCTGG  1037

seq1  AAATGTTTTACTAAAAGATTCTTTTAAAGAATTC  1082
      ||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTACTAAAAGATTCTTTTAAAGAATTC  1071