BAC Information

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BAC

Clone NameB6Ng01-057J18
Chromosome4 (Build37)
Map Location 135,001,290 - 135,099,654
singlet/doubletdoublet
Overlap geneNpal3, 4930555I21Rik, Grhl3
Upstream geneStmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2
Downstream gene1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057J18.bB6Ng01-057J18.g
ACCDH879427DH879428
length1101,017
definitionDH879427|Mus musculus domesticus DNA, BAC clone: B6Ng01-057J18, 5' end.DH879428|Mus musculus domesticus DNA, BAC clone: B6Ng01-057J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,099,545 - 135,099,654)(135,001,290 - 135,002,313)
sequence
aggtccaattaatttgtgtgcaggagcaatgtcctgcacatgaaagtgtc
cagcaaagactgaaagatcagagataaatggatatatggagggaggatgg
aggaaagaga
gaattccaggatcatatggtcaattccttttttttttttttttttgagag
gcagaatctctttgggtacaggctggccttgaactctgtgtggcccagat
tggtctcaaactcaatactttgtcacagacaggagaaacacaactagttt
acccaggaacctttcctcaagctttagtcttagcaaccattagagctgga
aagcttcagtagttcatgtagtgtgttattatgtatgatgggacacaagc
tagagtccccaagagatgtacatggtgtttagttcattagggcagagctt
tgtattcattccaggtgttaggatatcctggtggccatctgcatgggcta
cgtttggatctacatcttgcactgtacagagagaaaaactgagtgactgt
cacagatcttttaaatgatgagtcaaaattcagaaaccatgagacactaa
ttatgtacataaactacatatataaacacctacatagagataattcaatc
atatacataaaatggggtaaaaatagactttctttgagccaggatgttat
tgtaacccaggctggcctggaactcgttatgtggcccagggtgacctcaa
agatcactcctcctgcctctgcctccttagtgctaagattcaggtttgag
caaccatgtttggcaaacaaacatctccactaacaaagcagcaaaaacct
gagtgtatttgtcttagggtttactgctgtgaacagacaccatgaccaag
gcaagtcttataaggacaacatttaattgggactggcttataggttcaga
ggtgcagttcctttatcatcagagcatggcagcatctagcaggcatagtg
cagaggagctgagagttctacatcttcatctgaaggctgctagcaaaatt
ctgacttccaggcagctaggatgaagctcttaaggcccacaccccacgat
gacacaccttttcacgaggccacacctttcaaaatgccactatctggaca
agcacaatacaaccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_135099545_135099654
seq2: B6Ng01-057J18.b_50_159 (reverse)

seq1  TCTCTTTCCTCCATCCTCCCTCCATATATCCATTTATCTCTGATCTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCTCCATCCTCCCTCCATATATCCATTTATCTCTGATCTTTCA  50

seq1  GTCTTTGCTGGACACTTTCATGTGCAGGACATTGCTCCTGCACACAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCTGGACACTTTCATGTGCAGGACATTGCTCCTGCACACAAATT  100

seq1  AATTGGACCT  110
      ||||||||||
seq2  AATTGGACCT  110

seq1: chr4_135001290_135002313
seq2: B6Ng01-057J18.g_70_1086

seq1  GAATTCCAGGATCATATGGTCAATTCCTTTTTTTTTTTTTTTTTTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATCATATGGTCAATTCCTTTTTTTTTTTTTTTTTTGAGAG  50

seq1  GCAGAATCTCTTTGGGTACAGGCTGGCCTTGAACTCTGTGTGGCCCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATCTCTTTGGGTACAGGCTGGCCTTGAACTCTGTGTGGCCCAGAT  100

seq1  TGGTCTCAAACTCAATACTTTGTCACAGACAGGAGAAACACAACTAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCAAACTCAATACTTTGTCACAGACAGGAGAAACACAACTAGTTT  150

seq1  ACCCAGGAACCTTTCCTCAAGCTTTAGTCTTAGCAACCATTAGAGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGAACCTTTCCTCAAGCTTTAGTCTTAGCAACCATTAGAGCTGGA  200

seq1  AAGCTTCAGTAGTTCATGTAGTGTGTTATTATGTATGATGGGACACAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCAGTAGTTCATGTAGTGTGTTATTATGTATGATGGGACACAAGC  250

seq1  TAGAGTCCCCAAGAGATGTACATGGTGTTTAGTTCATTAGGGCAGAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCCCCAAGAGATGTACATGGTGTTTAGTTCATTAGGGCAGAGCTT  300

seq1  TGTATTCATTCCAGGTGTTAGGATATCCTGGTGGCCATCTGCATGGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCATTCCAGGTGTTAGGATATCCTGGTGGCCATCTGCATGGGCTA  350

seq1  CGTTTGGATCTACATCTTGCACTGTACAGAGAGAAAAACTGAGTGACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGGATCTACATCTTGCACTGTACAGAGAGAAAAACTGAGTGACTGT  400

seq1  CACAGATCTTTTAAATGATGAGTCAAAATTCAGAAACCATGAGACACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATCTTTTAAATGATGAGTCAAAATTCAGAAACCATGAGACACTAA  450

seq1  TTATGTACATAAACTACATATATAAACACCTACATAGAGATAATTCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACATAAACTACATATATAAACACCTACATAGAGATAATTCAATC  500

seq1  ATATACATAAAATGGGGTAAAAATAGACTTTCTTTGAGCCAGGATGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATAAAATGGGGTAAAAATAGACTTTCTTTGAGCCAGGATGTTAT  550

seq1  TGTAACCCAGGCTGGCCTGGAACTCGTTATGTGGCCCAGGGTGACCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCCAGGCTGGCCTGGAACTCGTTATGTGGCCCAGGGTGACCTCAA  600

seq1  AGATCACTCCTCCTGCCTCTGCCTCCTTAGTGCTAAGATTCAGGTTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTCCTCCTGCCTCTGCCTCCTTAGTGCTAAGATTCAGGTTTGAG  650

seq1  CAACCATGTTTGGCAAACAAACATCTCCACTAACAAAGCAGCAAAAACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGTTTGGCAAACAAACATCTCCACTAACAAAGCAGCAAAAACCT  700

seq1  GAGTGTATTTGTCTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAA  750
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGTGTATTTGTCTTAGGG-TTTACTGCTGTGAACAGACACCATGACCAA  749

seq1  GGCAAGTCTTATAAGGACAACATTTAATTGGGACTGGCTTATAGGTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTCTTATAAGGACAACATTTAATTGGGACTGGCTTATAGGTTCAG  799

seq1  AGGTGCAG-TCCATTATCATCAAGGCATGGCAGCATCCAGGCAGGCATAG  849
      |||||||| ||| |||||||||  ||||||||||||| | ||||||||||
seq2  AGGTGCAGTTCCTTTATCATCAGAGCATGGCAGCATCTA-GCAGGCATAG  848

seq1  TGCAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGCAAA  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCA-GAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGCAAA  897

seq1  ATACTGACTTCCAGGCAGCTAGGATGAGGCTCTTAAAGCCCACA-CCCAC  948
      || |||||||||||||||||||||||| |||||||| ||||||| |||||
seq2  ATTCTGACTTCCAGGCAGCTAGGATGAAGCTCTTAAGGCCCACACCCCAC  947

seq1  AGTGACACACCTCTCCAACGAGGCCACACCTTTCAATAATGCCACTATCT  998
        |||||||||| | | ||||||||||||||||||| |||||||||||||
seq2  GATGACACACCTTTTC-ACGAGGCCACACCTTTCAA-AATGCCACTATCT  995

seq1  GGACCAAGCATCATATACAAACCATA  1024
      ||| |||||| || |||| |||||||
seq2  GGA-CAAGCA-CA-ATAC-AACCATA  1017