BAC Information

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BAC

Clone NameB6Ng01-058C05
Chromosome4 (Build37)
Map Location 77,926,160 - 78,040,998
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058C05.bB6Ng01-058C05.g
ACCDH879797DH879798
length1,1031,121
definitionDH879797|Mus musculus domesticus DNA, BAC clone: B6Ng01-058C05, 5' end.DH879798|Mus musculus domesticus DNA, BAC clone: B6Ng01-058C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,926,160 - 77,927,278)(78,039,847 - 78,040,998)
sequence
gaattcaacatgatctgacatagactagactacagtacataatctgggaa
atgttttcttgataacccatttccaggtgactgtttgctaatagtcactt
attttcacagagatcattcttatggagttctggattctttcctttgtctt
attcaggacaacaataacataatgttatccagtaatgccagttaatcagt
tagcaaactctcattttatttgtttatatcttgtcataatgcttagggaa
ttcaccttttggtttatcttctagaacactagaatcatttctattttctc
tcatgtcagcttcctatgcaaatcattccaactcacaaacttgctatgta
acccagaaggatatttaattttgaattcctctagatgttgttttaaccta
tcactctttatttcataactccagtaatgtttttctttttcctatatagt
atcaagtcttggcagtgttttgtactgctaactgccctctagtaaagaca
ctagatactacacttcctttaaatgcaggtcatttaccactatctttttc
cagtgttctccttggtaccccaggataaggaatgatttgcaaagaatatc
ttggtagaatacttaaacaaaacattcttaaacttcaagtcacagtctat
tataacactacaaattctttgaggattttttttttcttttctgtttggca
aggaaatactaagatgcctaactgtgttctagcttcagtgaatttctctc
acatagtatgaagactgactataattgtagaaagaatattgagtgtttaa
ggataggagtgggtggctccagttcaatattttagtgtcaactgatatgt
gattttagattgccactcaagtctgatgtatgctagtcctggtgttgaga
gtttggcttgttacttaccctaagcatgtttctgaagagcttcttttggc
cataaagaattcctcaaatgagttctcaacctccaaaggtaggtacatat
tgaaaggtgggtcataggcccccgccttgctgatgtattgagactctttc
cagcaaaacccacacccataaaaattttaaaattattttaacgtacagac
ctt
gaattctcctgcatactgagtgttacttttctatactatttaattatatt
ccttcctttctatcttttctaatgagataaaaagaatgccctctaaaaca
gttaccaaaattctgaatgattatacttctacaccaaaacatgattaagg
atgaattattttgaaagctattggtaatatagttttaataaacaccggct
atgtgctttttgttagggtgataatggctatttacttttttagttccatg
cattgcaatcccagaaaatgtggaaaaattattttgttttattttatttt
taactagaactagagagagtagaataataacttcacactataaacatatt
cagttgacacattcatataatatgtcatttcattcgaggtggggtctgaa
gaaagcacttatgttactatttaattatccccttccatttagtgcacaca
tacacacttttgctttttatcaataggtaacattttgaaggctggtattg
ctcccttttttctattgtattttctataatgattatagaatgtgagctgg
ttctgtttttccaccaatattttatctcttataaggaacctaggagacca
attctcactttcctaaatccaaggtccactgtgtttgaaaaaaaaaatcc
ttctaacatttcagacaaagaaacatgcaagggtgcagttatcaaacact
gcctttgactgcctaacacacgaataggagaaaaaaatctatagttataa
gtctaagcataagaacagacactgcagagctacttctacaagtatcgagt
tcatttgttccactctggtcattctctttcattttgtaaatgtatagttt
ggcaacttgcaggacacaggcattgtgtcttaacttgagagtgtattgag
catttctgcatattattctacacatattcataaacatagctattttcact
tagatcatgttcagtatatatcacactgacattttctacaagaacctgga
aatgctttactgcccatttcccatctcttttgtgcataaaatgggatgga
agaagctgcctctcatgtcaaatctgaagaatcagttcatgctgagtctc
acagtctgattcacacaccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_77926160_77927278
seq2: B6Ng01-058C05.b_47_1149

seq1  GAATTCAACATGATCTGACATAGACTAGACTACAGTACATAATCTGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATGATCTGACATAGACTAGACTACAGTACATAATCTGGGAA  50

seq1  ATGTTTTCTTGATAACCCATTTCCAGGTGACTGTTTGCTAATAGTCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCTTGATAACCCATTTCCAGGTGACTGTTTGCTAATAGTCACTT  100

seq1  ATTTTCACAGAGATCATTCTTATGGAGTTCTGGATTCTTTCCTTTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACAGAGATCATTCTTATGGAGTTCTGGATTCTTTCCTTTGTCTT  150

seq1  ATTCAGGACAACAATAACATAATGTTATCCAGTAATGCCAGTTAATCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGACAACAATAACATAATGTTATCCAGTAATGCCAGTTAATCAGT  200

seq1  TAGCAAACTCTCATTTTATTTGTTTATATCTTGTCATAATGCTTAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAACTCTCATTTTATTTGTTTATATCTTGTCATAATGCTTAGGGAA  250

seq1  TTCACCTTTTGGTTTATCTTCTAGAACACTAGAATCATTTCTATTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTTTTGGTTTATCTTCTAGAACACTAGAATCATTTCTATTTTCTC  300

seq1  TCATGTCAGCTTCCTATGCAAATCATTCCAACTCACAAACTTGCTATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCAGCTTCCTATGCAAATCATTCCAACTCACAAACTTGCTATGTA  350

seq1  ACCCAGAAGGATATTTAATTTTGAATTCCTCTAGATGTTGTTTTAACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAGGATATTTAATTTTGAATTCCTCTAGATGTTGTTTTAACCTA  400

seq1  TCACTCTTTATTTCATAACTCCAGTAATGTTTTTCTTTTTCCTATATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTTTATTTCATAACTCCAGTAATGTTTTTCTTTTTCCTATATAGT  450

seq1  ATCAAGTCTTGGCAGTGTTTTGTACTGCTAACTGCCCTCTAGTAAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCTTGGCAGTGTTTTGTACTGCTAACTGCCCTCTAGTAAAGACA  500

seq1  CTAGATACTACACTTCCTTTAAATGCAGGTCATTTACCACTATCTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATACTACACTTCCTTTAAATGCAGGTCATTTACCACTATCTTTTTC  550

seq1  CAGTGTTCTCCTTGGTACCCCAGGATAAGGAATGATTTGCAAAGAATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTCTCCTTGGTACCCCAGGATAAGGAATGATTTGCAAAGAATATC  600

seq1  TTGGTAGAATACTTAAACAAAACATTCTTAAACTTCAAGTCACAGTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGAATACTTAAACAAAACATTCTTAAACTTCAAGTCACAGTCTAT  650

seq1  TATAACACTACAAATTCTTTGAGGATTTTTTTTTTCTTTTCTGTTTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACTACAAATTCTTTGAGGATTTTTTTTTTCTTTTCTGTTTGGCA  700

seq1  AGGAAATACTAAGATGCCTAACTGTGTTCTAGCTTCAGTGAATTTCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATACTAAGATGCCTAACTGTGTTCTAGCTTCAGTGAATTTCTCTC  750

seq1  ACATAGTATGAAGACTGACTATAATTGTAGAAAGAATATTGAGTGTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTATGAAGACTGACTATAATTGTAGAAAGAATATTGAGTGTTTAA  800

seq1  GGATAGGAGTGGGTGGCTCCAGTTCAATATTTTAGTGTCAACTGATATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGAGTGGGTGGCTCCAGTTCAATATTTTAGTGTCAACTGATATGT  850

seq1  GATTTTAGATTGCCACTCAAGTCTGATGTATGCTAGTCCTGGTGTTGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAGATTGCCACTCAAGTCTGATGTATGCTAGTCCTGGTGTTGAGA  900

seq1  GTTTGGCTTGTTACTTACCCTAAAGCATGTTTCTG-AGAGCTTCTTTTGG  949
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  GTTTGGCTTGTTACTTACCCT-AAGCATGTTTCTGAAGAGCTTCTTTTGG  949

seq1  CCATAAAGTATTACCTCAAATGAGTTCTCAACCTCCAAAGGTTAGTACAT  999
      |||||||| ||| |||||||||||||||||||||||||||||  ||||||
seq2  CCATAAAGAATT-CCTCAAATGAGTTCTCAACCTCCAAAGGTAGGTACAT  998

seq1  ATTGAAAGGTTGGTCATAGGCACCAGGCATGCATGATGTATGTAGACATT  1049
      |||||||||| |||||||||| || | | ||| ||||||||  ||||  |
seq2  ATTGAAAGGTGGGTCATAGGCCCCCGCCTTGC-TGATGTATTGAGAC--T  1045

seq1  CATACCAGCAAAACACCCACACCCATAAAATATTTTTAAAATATTATTTT  1099
      | | ||||||||  |||||||||||||||| |||||   || ||||||||
seq2  CTTTCCAGCAAA--ACCCACACCCATAAAA-ATTTT---AAAATTATTTT  1089

seq1  TAAAACTGTTCACAGACCTT  1119
         ||| ||  |||||||||
seq2  ---AAC-GT--ACAGACCTT  1103

seq1: chr4_78039847_78040998
seq2: B6Ng01-058C05.g_68_1188 (reverse)

seq1  TAGGTGTGGTTGAATCAGACCTAGTTTTGAGAACTTCAAGCATGAAACCT  50
      ||||||||  ||||||||||     | |||| |||   ||||||||    
seq2  TAGGTGTG--TGAATCAGAC-----TGTGAG-ACT--CAGCATGAA---C  37

seq1  TGATTTACTACAGATTTGTAACATGAGAGGCAGCTTCCTTCACTCCCACT  100
      |||||  || ||||||||  |||||||||||||||| ||||  ||||| |
seq2  TGATT--CTTCAGATTTG--ACATGAGAGGCAGCTT-CTTCCATCCCA-T  81

seq1  TTTATGCACAAAAAGAGATGTGGAAATGTGCAGTTAAAGCATTTTCCAAG  150
      ||||||||| |||||||||| ||||||| |||| ||||||||||  | ||
seq2  TTTATGCAC-AAAAGAGATG-GGAAATGGGCAG-TAAAGCATTT--CCAG  126

seq1  TTTCTTTGTTAGAAAATGTCAGTGTGATATTATACCTGGACATGATTCTT  200
       |||||   |||||||||||||||||||| |||| ||| |||||||   |
seq2  GTTCTT--GTAGAAAATGTCAGTGTGATA-TATA-CTGAACATGAT--CT  170

seq1  AAGTGAAAATAGCTATGTTTATGAATATTGTGTAGAATAATATGCAGAAA  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGTGAAAATAGCTATGTTTATGAATA-TGTGTAGAATAATATGCAGAAA  219

seq1  TGCTCAATACACTCTCAAGTTAAGACACAATGCCTGTGTCCTGCAAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAATACACTCTCAAGTTAAGACACAATGCCTGTGTCCTGCAAGTTG  269

seq1  CCAAACTATACATTTACAAAATGAAAGAGAATGACCAGAGTGGAACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTATACATTTACAAAATGAAAGAGAATGACCAGAGTGGAACAAAT  319

seq1  GAACTCGATACTTGTAGAAGTAGCTCTGCAGTGTCTGTTCTTATGCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCGATACTTGTAGAAGTAGCTCTGCAGTGTCTGTTCTTATGCTTAG  369

seq1  ACTTATAACTATAGATTTTTTTCTCCTATTCGTGTGTTAGGCAGTCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAACTATAGATTTTTTTCTCCTATTCGTGTGTTAGGCAGTCAAAG  419

seq1  GCAGTGTTTGATAACTGCACCCTTGCATGTTTCTTTGTCTGAAATGTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTTGATAACTGCACCCTTGCATGTTTCTTTGTCTGAAATGTTAG  469

seq1  AAGGATTTTTTTTTTCAAACACAGTGGACCTTGGATTTAGGAAAGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTTTTTTTTCAAACACAGTGGACCTTGGATTTAGGAAAGTGAGA  519

seq1  ATTGGTCTCCTAGGTTCCTTATAAGAGATAAAATATTGGTGGAAAAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCTCCTAGGTTCCTTATAAGAGATAAAATATTGGTGGAAAAACAG  569

seq1  AACCAGCTCACATTCTATAATCATTATAGAAAATACAATAGAAAAAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTCACATTCTATAATCATTATAGAAAATACAATAGAAAAAAGGG  619

seq1  AGCAATACCAGCCTTCAAAATGTTACCTATTGATAAAAAGCAAAAGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATACCAGCCTTCAAAATGTTACCTATTGATAAAAAGCAAAAGTGTG  669

seq1  TATGTGTGCACTAAATGGAAGGGGATAATTAAATAGTAACATAAGTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGCACTAAATGGAAGGGGATAATTAAATAGTAACATAAGTGCTT  719

seq1  TCTTCAGACCCCACCTCGAATGAAATGACATATTATATGAATGTGTCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACCCCACCTCGAATGAAATGACATATTATATGAATGTGTCAAC  769

seq1  TGAATATGTTTATAGTGTGAAGTTATTATTCTACTCTCTCTAGTTCTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGTTTATAGTGTGAAGTTATTATTCTACTCTCTCTAGTTCTAGT  819

seq1  TAAAAATAAAATAAAACAAAATAATTTTTCCACATTTTCTGGGATTGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAAATAAAACAAAATAATTTTTCCACATTTTCTGGGATTGCAA  869

seq1  TGCATGGAACTAAAAAAGTAAATAGCCATTATCACCCTAACAAAAAGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGAACTAAAAAAGTAAATAGCCATTATCACCCTAACAAAAAGCAC  919

seq1  ATAGCCGGTGTTTATTAAAACTATATTACCAATAGCTTTCAAAATAATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCGGTGTTTATTAAAACTATATTACCAATAGCTTTCAAAATAATTC  969

seq1  ATCCTTAATCATGTTTTGGTGTAGAAGTATAATCATTCAGAATTTTGGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAATCATGTTTTGGTGTAGAAGTATAATCATTCAGAATTTTGGTA  1019

seq1  ACTGTTTTAGAGGGCATTCTTTTTATCTCATTAGAAAAGATAGAAAGGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTAGAGGGCATTCTTTTTATCTCATTAGAAAAGATAGAAAGGAA  1069

seq1  GGAATATAATTAAATAGTATAGAAAAGTAACACTCAGTATGCAGGAGAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATAATTAAATAGTATAGAAAAGTAACACTCAGTATGCAGGAGAAT  1119

seq1  TC  1152
      ||
seq2  TC  1121