BAC Information

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BAC

Clone NameB6Ng01-058M05
Chromosome4 (Build37)
Map Location 127,416,126 - 127,417,238
singlet/doubletsinglet
Overlap genenone
Upstream geneNcdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
Downstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058M05.bB6Ng01-058M05.g
ACCDH880253DH880254
length1,099135
definitionDH880253|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M05, 5' end.DH880254|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctagttgctattcgaaatcagtgtttgagtgtgtacactatggac
atcttggcttagatgtgagagaggctcagaccacactgcccatggcctat
agttgaccaaaacaacagagacgacaacaaaacaacggctgaacataaag
actgacacctaagggaggaacatctcatatagaatcttggacatcgaaga
ccatgctacagagagctgtaggataagccaagagagggagctcagaagaa
atggctgactccagtggactttcataagatctgactaattttttaaatgc
cttgaataaattattttaacctagattcagcatcctataatttttcttgt
tttaaaactaaaaaaaatgggagtaaaaaagagaggcacaaagagatggg
tgtgtcaccacacaaatgtcacctagcacatgggaggtgtaggagagagt
acgaaaaattcaaggtcttgttcagctataaagtgagttttgggtagcct
gggctacatgaaaccctgcttcaaaaacaccaaacaacaatgactatgaa
atgatttagttgatttctcttcttaataattattgatgaaggcttctttt
ctaacatgtgttagggaaagtgtggtccttcaaaaaaaaaaaaaaagaaa
gaaagaaagaaagaaaagcaactccctagcacaaaacaggccataaactt
caaactcttcaggtaaaaaacaacagaaaatacatttccatagagccaag
ataataaaaacagaatcaatacaggtaagcatcaaaccaaaatataacac
aaataaacccacctgctttcggtagaacaccagagtgagactctctagat
gaaagagctttaactgtcagcttgacacagcctagagtcatctgagagag
tctcagagaagcttgcctagatcagcttggcctgtgggcatgtctgtggg
gcactgtctagattgttagtcgatatagagggtgcagcccactgtgggcg
gtacagtttctaggcagagggtatgctggacttcatagaagctagctagg
catgagcttgtgagtgatcaacagcagcagtcctagtttctggtcaaat
atgtctgcatctggggtgagggggcagggatatatgtttggggttagtgt
ctccaggctgagaggaggtcactcatgggtgatgatgctcttcacctcca
aggaagaggaggaagaggaggaggaggaagaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_127416126_127417238
seq2: B6Ng01-058M05.b_44_1142

seq1  GAATTCTAGTTGCTATTCGAAATCAGTGTTTGAGTGTGTACACTATGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTGCTATTCGAAATCAGTGTTTGAGTGTGTACACTATGGAC  50

seq1  ATCTTGGCTTAGATGTGAGAGAGGCTCAGACCACACTGCCCATGGCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGCTTAGATGTGAGAGAGGCTCAGACCACACTGCCCATGGCCTAT  100

seq1  AGTTGACCAAAACAACAGAGACGACAACAAAACAACGGCTGAACATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACCAAAACAACAGAGACGACAACAAAACAACGGCTGAACATAAAG  150

seq1  ACTGACACCTAAGGGAGGAACATCTCATATAGAATCTTGGACATCGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACACCTAAGGGAGGAACATCTCATATAGAATCTTGGACATCGAAGA  200

seq1  CCATGCTACAGAGAGCTGTAGGATAAGCCAAGAGAGGGAGCTCAGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTACAGAGAGCTGTAGGATAAGCCAAGAGAGGGAGCTCAGAAGAA  250

seq1  ATGGCTGACTCCAGTGGACTTTCATAAGATCTGACTAATTTTTTAAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGACTCCAGTGGACTTTCATAAGATCTGACTAATTTTTTAAATGC  300

seq1  CTTGAATAAATTATTTTAACCTAGATTCAGCATCCTATAATTTTTCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATAAATTATTTTAACCTAGATTCAGCATCCTATAATTTTTCTTGT  350

seq1  TTTAAAACTAAAAAAAATGGGAGTAAAAAAGAGAGGCACAAAGAGATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTAAAAAAAATGGGAGTAAAAAAGAGAGGCACAAAGAGATGGG  400

seq1  TGTGTCACCACACAAATGTCACCTAGCACATGGGAGGTGTAGGAGAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCACCACACAAATGTCACCTAGCACATGGGAGGTGTAGGAGAGAGT  450

seq1  ACGAAAAATTCAAGGTCTTGTTCAGCTATAAAGTGAGTTTTGGGTAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAAATTCAAGGTCTTGTTCAGCTATAAAGTGAGTTTTGGGTAGCCT  500

seq1  GGGCTACATGAAACCCTGCTTCAAAAACACCAAACAACAATGACTATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACATGAAACCCTGCTTCAAAAACACCAAACAACAATGACTATGAA  550

seq1  ATGATTTAGTTGATTTCTCTTCTTAATAATTATTGATGAAGGCTTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAGTTGATTTCTCTTCTTAATAATTATTGATGAAGGCTTCTTTT  600

seq1  CTAACATGTGTTAGGGAAAGTGTGGTCCTTCAAAAAAAAAAAAAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATGTGTTAGGGAAAGTGTGGTCCTTCAAAAAAAAAAAAAAAGAAA  650

seq1  GAAAGAAAGAAAGAAAAGCAACTCCCTAGCACAAAACAGGCCATAAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAAGCAACTCCCTAGCACAAAACAGGCCATAAACTT  700

seq1  CAAACTCTTCAGGTAAAAAACAACAGAAAATACATTTCCATAGAGCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTTCAGGTAAAAAACAACAGAAAATACATTTCCATAGAGCCAAG  750

seq1  ATAATAAAAACAGAATCAATACAGGTAAGCATCAAACCAAAATATAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAAACAGAATCAATACAGGTAAGCATCAAACCAAAATATAACAC  800

seq1  AAATAAACCCACCTGCTTTCGGTAGAACACCAGAGTGAGACTCTCTAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACCCACCTGCTTTCGGTAGAACACCAGAGTGAGACTCTCTAGAT  850

seq1  GAAAGAGCTTTAACTGTCAGCTTGACACAGCCTAGAGTCATCTGAGAAGA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAAGAGCTTTAACTGTCAGCTTGACACAGCCTAGAGTCATCTGAG-AGA  899

seq1  GTCTCAAGAGAAGGCTTGCCTAGATCAGCTTGGCCTGTGGGCATGTCTGT  950
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCTC-AGAGAA-GCTTGCCTAGATCAGCTTGGCCTGTGGGCATGTCTGT  947

seq1  GGGGCACTGTCTAGATTGTTAGTCGATATAGGAGGGTGCAGCCCACTGTG  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGGGCACTGTCTAGATTGTTAGTCGATATA-GAGGGTGCAGCCCACTGTG  996

seq1  GGCGGTACAGTTTCCTAGGCAGAGGGTATGCTGGACTTCATAAGAAAGCT  1050
      ||||||||||||| ||||||||||||||||||||||||||||   |||||
seq2  GGCGGTACAGTTT-CTAGGCAGAGGGTATGCTGGACTTCATA--GAAGCT  1043

seq1  AGCTAGGCATGAGCTTGTGAGTGATCCAGCAGGCAGCATGTCCCCATAGT  1100
      ||||||||||||||||||||||||| || || |||||| ||||   ||||
seq2  AGCTAGGCATGAGCTTGTGAGTGAT-CAACA-GCAGCA-GTCC---TAGT  1087

seq1  TTCTGGCTCAAAT  1113
      |||||| ||||||
seq2  TTCTGG-TCAAAT  1099