BAC Information

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BAC

Clone NameB6Ng01-059G24
Chromosome4 (Build37)4 (Build37)
Map Location 146,706,796 - 146,707,787145,750,741 - 145,751,744
singlet/doubletsingletsinglet
Overlap geneLOC666581
Upstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059G24.bB6Ng01-059G24.g
ACCDH880721DH880722
length1,1661,048
definitionDH880721|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G24, 5' end.DH880722|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,706,796 - 146,707,787)(145,750,741 - 145,751,744)
sequence
gaattcatacaggagagaaaccttacaaatgcagtgaatgtggcaaatgc
tttactgaaaaaagcagtctgagaactcatcagagaattcatacaggaga
gaaaccttacaaatgcaatgaatgtggcaaatgctttactgaaaaaagca
gtctgagaattcatcagagaattcatacaggagagaaaccttacaaatgc
agtgaatgtggcaaatgctttactgtaaaaagcagtctgagaattcatca
gagaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaat
gctttaccaaacaatccaatcttagtattcatcagagaattcatacagga
gagaaaccttacaaatgcagtgaatgtgaaaaatgcttttcccgaaaatt
ccatcttggtattcatcagagaattcatacaggagagagaccttacaaat
gcagtgaatgtgaaaaatgcttttcccgaaaattccatcttggtattcat
cagagaattcatacaggaaagaaaccttacaaatagattgtatgtgacaa
atacaatactcacaatgtcagtcttagaaatcatcagttatttcatacag
tagagaatctttataaatgaagtaaatgaggcaattctttaccaagatat
attatctcaaaattcattagagaatacttagagaagacaaacttttcaaa
tatattgtaggtatgaatcctttccttttggcctatttcctagactgtaa
cagtgaatacttacaggctagaaacttaactcatgcattgtatgaagaaa
tatctttgacttcatttcatgtcagagagaacatctaagaactttttagg
gtaaagtatttctgttggggaaaatggtgtattcttgacaacacttgagg
ctccacactagagaattagtatgattatgaaaatcttgtgaaatattcat
gcatgttcaaatctagtatgtcactatttatgctgtgagaaactctgaaa
tgtgaatgtagaagcttttcatgacaccttttacttgtcatcctcaaacg
ttaccagatgagacaagtgggagtcgaagatggattttataacctttatt
cggaagagataatccatttcaagaactatcagtcttatacaaccctcaaa
gaaaactggtagcatt
gaattcatcccatatacagacaccaatcgcagacactattgtggatgaca
attagtgcttgctgacaggagcctgatatggctgtctcctgagaggctct
gccagtgcctaaaaaatacaaaggcagatgcttgcagccaaccaatggac
tgagcactgggtccatatggcagaagttagagaaaggactgaagaagctg
aaaagttttgcaaccctatagggagaacaacaatatcaaacaaccagaca
caccagagctcccaaggactaaatcaccaaccaacgagtacaaatggagc
aacccatgtccccagctacatatttaatagaggatggtcatgttgggcat
gcctgggaggagaggtcctaggtcctgtgtagacttgatggcccagtgta
cattaatgccagggaacggagacaggagtaggtgggggcatgtgggagga
ccctcatagaagcaggcgggaaataatagggggtttctggaggggaaccg
ggaaaggggataacatttgaaatataaataaataaaatatacaaaaaatt
agtcaccaagacatttaagtaaaatggaatattgaaagtgtcttaatcat
acaccaatagccaaggtcctcatttgtacccccccatcctcagtgtaccc
cctcttcctatctttgtaaatgggagcctcatgaacctaataagtcaagc
tatgccttgaatttgcccctttttacatctaaaatttctacatctacagt
ttttacatctaatttctacatttttttacatataaaatttccttagtaca
attataaaatttacaacttctctcttgctgtccatgcttactatcactta
ttagcgtcaaggatgaatcctataaaaatatgtcctactttccctgaatc
tctcagactctgagctgcattgttcaacccacaccctgcactgtactctg
gtcatggtctcatctgacctcacaccacagttcctgactaatcagcgctt
tcgaaacttcacctactggagtatcttttgagttttctatgtgacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146706796_146707787
seq2: B6Ng01-059G24.b_257_1212

seq1  GCAAATGCTTTACTGTAAAAAGCAGTCTGAGAATTCATCAGAGAATTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCTTTACTGTAAAAAGCAGTCTGAGAATTCATCAGAGAATTCAT  50

seq1  ACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACCAA  100

seq1  ACAATCCAATCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCAATCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTT  150

seq1  ACAAATGCAGTGAATGTGAAAAATGCTTTTCCCGAAAATTACATCTTGGT  200
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACAAATGCAGTGAATGTGAAAAATGCTTTTCCCGAAAATTCCATCTTGGT  200

seq1  ATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGCAGTGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGCAGTGAATG  250

seq1  TGAAAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATCAGAGAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATCAGAGAATTC  300

seq1  ATACAGGAAAGAAACCTTACAAATAGATTGTATGTGACAAATACAATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAAAGAAACCTTACAAATAGATTGTATGTGACAAATACAATACT  350

seq1  CACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATCT  400

seq1  TTATAAATGAAGTAAATGAGGCAATTCTTTACCAAGATATATTATCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGAAGTAAATGAGGCAATTCTTTACCAAGATATATTATCTCAA  450

seq1  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAG  500

seq1  GTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGAATAC  550

seq1  TTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTTGAC  600

seq1  TTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGTATT  650
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCATGTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGTATT  650

seq1  TCTGTTGGGGAAAATGGTGTATTCTTGACAACACTTGAGGCTCCACACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGGGAAAATGGTGTATTCTTGACAACACTTGAGGCTCCACACTA  700

seq1  GAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCATGCAATGTTC  750
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  GAGAATTAGTATGATTATGAAAATCTTGTG-AAATATTCATGC-ATGTTC  748

seq1  AAATCTTAGGTAATGTCAACTATTTATGCTGTGAGAAACTCTGAAAATGT  800
      ||||| |||   ||||| ||||||||||||||||||||||||| ||||||
seq2  AAATC-TAG--TATGTC-ACTATTTATGCTGTGAGAAACTCTG-AAATGT  793

seq1  GAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCATCCTCAAAC  850
      | ||||||| ||||||||||||||||| ||||||||| ||||||||||||
seq2  G-AATGTAG-AAGCTTTTCATGACACC-TTTTACTTG-TCATCCTCAAAC  839

seq1  GTTACCAGATGAAGACAAGTTGGGAAGTCAGAAGATAGTATTTTATAACA  900
      ||||||||||| ||||||||  || |||| |||||| | |||||||||| 
seq2  GTTACCAGATG-AGACAAGT--GGGAGTC-GAAGAT-GGATTTTATAAC-  883

seq1  CTTTAATCGAGAAAGAAATAATCCATTTCAAAAGGAAACTATTTAAGGTC  950
      ||||| ||  | |||| ||||||||||||||     ||||||     |||
seq2  CTTTATTC--GGAAGAGATAATCCATTTCAA----GAACTAT---CAGTC  924

seq1  TTTAATACAACCCTCAAAATAGGTAATAAAACTGGTAGCATT  992
      ||  ||||||||||||        || |||||||||||||||
seq2  TT--ATACAACCCTCA--------AAGAAAACTGGTAGCATT  956

seq1: chr4_145750741_145751744
seq2: B6Ng01-059G24.g_116_1115

seq1  CAATTAGTGCTTGCTGACAGGAGCCTGATATGGCTGTCTCCTGAGAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGTGCTTGCTGACAGGAGCCTGATATGGCTGTCTCCTGAGAGGCT  50

seq1  CTGCCAGTGCCTAAAAAATACAAAGGCAGATGCTTGCAGCCAACCAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTGCCTAAAAAATACAAAGGCAGATGCTTGCAGCCAACCAATGG  100

seq1  ACTGAGCACTGGGTCCATATGGCAGAAGTTAGAGAAAGGACTGAAGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCACTGGGTCCATATGGCAGAAGTTAGAGAAAGGACTGAAGAAGC  150

seq1  TGAAAAGTTTTGCAACCCTATAGGGAGAACAACAATATCAAACAACCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTTTTGCAACCCTATAGGGAGAACAACAATATCAAACAACCAGA  200

seq1  CACACCAGAGCTCCCAAGGACTAAATCACCAACCAACGAGTACAAATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGAGCTCCCAAGGACTAAATCACCAACCAACGAGTACAAATGGA  250

seq1  GCAACCCATGTCCCCAGCTACATATTTAATAGAGGATGGTCATGTTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCATGTCCCCAGCTACATATTTAATAGAGGATGGTCATGTTGGGC  300

seq1  ATGCCTGGGAGGAGAGGTCCTAGGTCCTGTGTAGACTTGATGGCCCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGGAGGAGAGGTCCTAGGTCCTGTGTAGACTTGATGGCCCAGTG  350

seq1  TACATTAATGCCAGGGAACGGAGACAGGAGTAGGTGGGGGCATGTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAATGCCAGGGAACGGAGACAGGAGTAGGTGGGGGCATGTGGGAG  400

seq1  GACCCTCATAGAAGCAGGCGGGAAATAATAGGGGGTTTCTGGAGGGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCATAGAAGCAGGCGGGAAATAATAGGGGGTTTCTGGAGGGGAAC  450

seq1  CGGGAAAGGGGATAACATTTGAAATATAAATAAATAAAATATACAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAAGGGGATAACATTTGAAATATAAATAAATAAAATATACAAAAAA  500

seq1  TTAGTCACCAAGACATTTAAGTAAAATGGAATATTGAAAGTGTCTTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACCAAGACATTTAAGTAAAATGGAATATTGAAAGTGTCTTAATC  550

seq1  ATACACCAATAGCCAAGGTCCTCATTTGTACCCCCCCATCCTCAGTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCAATAGCCAAGGTCCTCATTTGTACCCCCCCATCCTCAGTGTAC  600

seq1  CCCCTCTTCCTATCTTTGTAAATGGGAGCCTCATGAACCTAATAAGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTCCTATCTTTGTAAATGGGAGCCTCATGAACCTAATAAGTCAA  650

seq1  GCTATGCCTTGAATTTGCCCCTTTTTACATCTAAAATTTCTACATCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCCTTGAATTTGCCCCTTTTTACATCTAAAATTTCTACATCTACA  700

seq1  GTTTTTACATCTAATTTCTACATTTTTTTACATATAAAATTTCCTTAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACATCTAATTTCTACATTTTTTTACATATAAAATTTCCTTAGTA  750

seq1  CAATTATAAAATTTACAACTTCTCTCTTGCTGTCCATGCTTACTATCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATAAAATTTACAACTTCTCTCTTGCTGTCCATGCTTACTATCACT  800

seq1  TATTAGCGTCAAGGATGAATCCTATAAAAATATGTCCTACTTTCCCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCGTCAAGGATGAATCCTATAAAAATATGTCCTACTTTCCCTGAA  850

seq1  TCCTCTCAGACTCTGAGCTGCATTGTTCAACCCACACCCTGCACTGTACT  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CTCTCAGACTCTGAGCTGCATTGTTCAACCCACACCCTGCACTGTACT  899

seq1  CTGGTCATGGTCTCATCCTGACCTCACACCACAAGTTCCTGACTAATCAG  950
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  CTGGTCATGGTCTCAT-CTGACCTCACACCAC-AGTTCCTGACTAATCAG  947

seq1  CGCTTTCGAAACTTCACCTACTGATGTATCTTTTTGAGTTTTCTATGTGA  1000
      |||||||||||||||||||||||  ||||| |||||||||||||||||||
seq2  CGCTTTCGAAACTTCACCTACTGGAGTATC-TTTTGAGTTTTCTATGTGA  996

seq1  CTTC  1004
      ||||
seq2  CTTC  1000