BAC Information

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BAC

Clone NameB6Ng01-059K06
Chromosome4 (Build37)
Map Location 28,698,164 - 28,802,442
singlet/doubletdoublet
Overlap geneEpha7
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
Downstream geneLOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059K06.bB6Ng01-059K06.g
ACCDH880857DH880858
length1,064894
definitionDH880857|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K06, 5' end.DH880858|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,698,164 - 28,699,224)(28,801,540 - 28,802,442)
sequence
gaattcattactagagtgcctgactagcaggtgggacacaggattcaact
accagaaatacagcaataataacacgtaacatcacaggaactcggaagtg
atgaagataccttgtccccattttcttcatttcctaattcacttactaat
atttatttgatacctgttgtgttctggccattgattaagttctggtccta
ataaaataaaatataaaagtatgtcataatctaagggaatgatagagaga
aaatgtaataaccctttgtgcttcaagggccctggaaccaattggaaggg
gaagctaatgcagagaaaaatggtgaggcagttattgctttaatattgac
agtatacaatagagaaggggcagagacacagtgaccccacaaggaaaaga
agaagagcctagtgacagaagcctagcattccaggcacttgggaagctaa
ggcaggaagatactgaattcaaactggacatgagcaacttagtgatactc
tgtctaaacccataggataaaaaagaggacttaagatacgtcatgaattt
ggcatgaggcgtatcatgtatcagttctagcttcaattcccagcactgta
aaatagttaactactgaacctaatcaattaattaatgcatggcaggaaga
aaaataaactattattgcaatatacaggtaaacacctttaagacaaaaga
gggctggccatctgcaaaagttacactggtaatacagttttataaaactt
gttctttatcagttttgtgcatatagtacttcaaatcccacttccctgca
cactctctaattcttccagctcctataccttacccctttcttcttatgag
tccccccacccgcgggggatgtctgttttattttactttgttttgggact
tgcttatttaaccaggagcatctgtatgactaaggattgaacttatccat
taaaagtttgtgacttcattattgccatgtaaataaggagaatgtttagc
ttcttcaggatctatcaatagacagccagtcagcataagcccacaatagc
tccctatatgatga
gaattcccatgcaatggattctacaatctttgatatactcatatacacac
ttttgaaaattctgaggtagtcagtgtaataagttgcaataatatgggta
aagcaacttactggtgatcctttaaagtcacattctcttttttttttttt
tttttttttttttttgcttttcaaaaacagggtttctctgtgtagccctg
gctgtcctggaactcactctgtagaccaggctggcctcgaactcaaaaat
ccgcctgcctctgcctcccgagtgctgggattaaaggcatgcaccaccac
tgcccggctaaagtcacattcttatagtcaatgttttacctacaaaattt
cacaaaatcattcaaacttttagtgatatgatatgagctctgtgaaaacc
atttacccatatacaatcaaacttacaatgagtgaaagaaaacaaactaa
gatatcaatggattttattgtgtctgtaaaacactgaataatgcccacat
atgcctacctgtccttagaaaatacttcatactggtggggtttttttttt
tttttttttttttttttggaaataatctaaaaagggatttatgggagttt
ttctggggtcccccaataaagaccaagaaagagacaaagcccaaacaggc
catctctccctactaaagcataatgtattctgtttaccaaagaaggccca
tgggaacccctaaacaacaacaggcaatgccaagacttaagggtactctc
tgcgctctcacagcaaggccatagctggaatgcatatccccacacttgtg
gacatcgagctgcatggttgtgctcatggtgttcacagtgggggtggggt
ttctgatcttgtgcctttttcaagggctcttttcttccattgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28698164_28699224
seq2: B6Ng01-059K06.b_45_1100

seq1  GAATTCATTACTAGAGTGCCTGACTAGCAGGTGGGACACAGGATTCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACTAGAGTGCCTGACTAGCAGGTGGGACACAGGATTCAACT  50

seq1  ACCAGAAATACAGCAATAATAACACGTAACATCACAGGAACTCGGAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAATACAGCAATAATAACACGTAACATCACAGGAACTCGGAAGTG  100

seq1  ATGAAGATACCTTGTCCCCATTTTCTTCATTTCCTAATTCACTTACTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATACCTTGTCCCCATTTTCTTCATTTCCTAATTCACTTACTAAT  150

seq1  ATTTATTTGATACCTGTTGTGTTCTGGCCATTGATTAAGTTCTGGTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGATACCTGTTGTGTTCTGGCCATTGATTAAGTTCTGGTCCTA  200

seq1  ATAAAATAAAATATAAAAGTATGTCATAATCTAAGGGAATGATAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAATATAAAAGTATGTCATAATCTAAGGGAATGATAGAGAGA  250

seq1  AAATGTAATAACCCTTTGTGCTTCAAGGGCCCTGGAACCAATTGGAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAATAACCCTTTGTGCTTCAAGGGCCCTGGAACCAATTGGAAGGG  300

seq1  GAAGCTAATGCAGAGAAAAATGGTGAGGCAGTTATTGCTTTAATATTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAATGCAGAGAAAAATGGTGAGGCAGTTATTGCTTTAATATTGAC  350

seq1  AGTATACAATAGAGAAGGGGCAGAGACACAGTGACCCCACAAGGAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACAATAGAGAAGGGGCAGAGACACAGTGACCCCACAAGGAAAAGA  400

seq1  AGAAGAGCCTAGTGACAGAAGCCTAGCATTCCAGGCACTTGGGAAGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCCTAGTGACAGAAGCCTAGCATTCCAGGCACTTGGGAAGCTAA  450

seq1  GGCAGGAAGATACTGAATTCAAACTGGACATGAGCAACTTAGTGATACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAAGATACTGAATTCAAACTGGACATGAGCAACTTAGTGATACTC  500

seq1  TGTCTAAACCCATAGGATAAAAAAGAGGACTTAAGATACGTCATGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAACCCATAGGATAAAAAAGAGGACTTAAGATACGTCATGAATTT  550

seq1  GGCATGAGGCGTATCATGTATCAGTTCTAGCTTCAATTCCCAGCACTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAGGCGTATCATGTATCAGTTCTAGCTTCAATTCCCAGCACTGTA  600

seq1  AAATAGTTAACTACTGAACCTAATCAATTAATTAATGCATGGCAGGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTAACTACTGAACCTAATCAATTAATTAATGCATGGCAGGAAGA  650

seq1  AAAATAAACTATTATTGCAATATACAGGTAAACACCTTTAAGACAAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACTATTATTGCAATATACAGGTAAACACCTTTAAGACAAAAGA  700

seq1  GGGCTGGCCATCTGCAAAAGTTACACTGGTAATACAGTTTTATAAAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGCCATCTGCAAAAGTTACACTGGTAATACAGTTTTATAAAACTT  750

seq1  GTTCTTTATCAGTTTTGTGCATATAGTACTTCAAATCCCACTTCCCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTATCAGTTTTGTGCATATAGTACTTCAAATCCCACTTCCCTGCA  800

seq1  CACTCTCTAATTCTTCCAGCTCCTATACCTTACCCCTTTCTTCTTATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTAATTCTTCCAGCTCCTATACCTTACCCCTTTCTTCTTATGAG  850

seq1  TCCCCCCACCCGCGGGGGATGTCTGTTTTATTTTACTTTGTTTTGGGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCACCCGCGGGGGATGTCTGTTTTATTTTACTTTGTTTTGGGACT  900

seq1  TGCTTATTTAACCAGGAGCATCTGTATGACTAAGGATTTGAACTTATCCA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCTTATTTAACCAGGAGCATCTGTATGACTAAGGA-TTGAACTTATCCA  949

seq1  TTAAAAGTTTGTGACTTCATTATTTGCCATGTAAATAAGGAGAATGTTTA  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTAAAAGTTTGTGACTTCATTA-TTGCCATGTAAATAAGGAGAATGTTTA  998

seq1  GCTTTCTCCAGGATCTATCAATAGACAGCCAGTCCAGCATAGGCCCACAA  1050
      || |||| ||||||||||||||||||||||||| ||||||| ||||||||
seq2  GC-TTCTTCAGGATCTATCAATAGACAGCCAGT-CAGCATAAGCCCACAA  1046

seq1  TAGCCTCCCTA  1061
      ||| |||||||
seq2  TAG-CTCCCTA  1056

seq1: chr4_28801540_28802442
seq2: B6Ng01-059K06.g_67_960 (reverse)

seq1  AACAATGGGAAGGAAAAGAGCCCCTGAAAAAGGCACAAGGATCAGAGACC  50
      ||||||||  | ||||||||||| |||||||||||||| ||||||| |||
seq2  AACAATGG--AAGAAAAGAGCCCTTGAAAAAGGCACAA-GATCAGAAACC  47

seq1  CCACCCCCCAACTGTGAACACCAATGAGCACCAACATGGCAGCTCGATGT  100
      ||||||||  |||||||||||| |||||||| | ||| ||||||||||| 
seq2  CCACCCCC--ACTGTGAACACC-ATGAGCACAACCAT-GCAGCTCGATG-  92

seq1  TCAACAAGTTGTGTGGATATTGCATT-CAGCTATGGCCTTGCTGTGAGAC  149
      || ||||| |||| ||||| |||||| |||||||||||||||||||||| 
seq2  TCCACAAG-TGTGGGGATA-TGCATTCCAGCTATGGCCTTGCTGTGAGAG  140

seq1  TGCAGAGAGTACCCTATAGTCTTGGCAATTGCCTG-TGTTGTTTAGGGGT  198
       ||||||||||||||  ||||||||| |||||||| ||||||||||||||
seq2  CGCAGAGAGTACCCTTAAGTCTTGGC-ATTGCCTGTTGTTGTTTAGGGGT  189

seq1  TCCCATGGGACCTCTTTGGCTAACAG-ATACATTAGTGCTTTAGTAGGGA  247
      ||||||||| | |||||||  ||||| |||||||| ||||||||||||||
seq2  TCCCATGGGCCTTCTTTGGTAAACAGAATACATTA-TGCTTTAGTAGGGA  238

seq1  GAGATGGCCTGTTTGGGCTTTGTCTCTTTCTTTGTCTTTATTTGGTGACT  297
      |||||||||||||||||||||||||||||||| ||||||||| || ||| 
seq2  GAGATGGCCTGTTTGGGCTTTGTCTCTTTCTTGGTCTTTATTGGGGGACC  288

seq1  CCAGATAAACTGCCATAAATACCTCTCTAGATTAATTCCAAAAAAAAAAA  347
      ||||| ||||| |||||||| ||| | ||||||| |||||||||||||||
seq2  CCAGAAAAACTCCCATAAATCCCTTTTTAGATTATTTCCAAAAAAAAAAA  338

seq1  AAAAAAAAAAAAAAAAACCCAACAGTATGAAGTATTTTCTAAGGACAGGT  397
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAACCCCACCAGTATGAAGTATTTTCTAAGGACAGGT  388

seq1  AGGCATATGTGGGCATTATTCAGTGTCTTACAGACACAATAAAATCCATT  447
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGCATATGTGGGCATTATTCAGTGTTTTACAGACACAATAAAATCCATT  438

seq1  GATATCTTAGTTTGTTTTCTTTCACTCATTGTAAGTTTGATTGTATATGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTAGTTTGTTTTCTTTCACTCATTGTAAGTTTGATTGTATATGG  488

seq1  GTAAATGGTTTTCACAGAGCTCATATCATATCACTAAAAGTTTGAATGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGGTTTTCACAGAGCTCATATCATATCACTAAAAGTTTGAATGAT  538

seq1  TTTGTGAAATTTTGTAGGTAAAACATTGACTATAAGAATGTGACTTTAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAAATTTTGTAGGTAAAACATTGACTATAAGAATGTGACTTTAGC  588

seq1  CGGGCAGTGGTGGTGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGTGGTGGTGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGC  638

seq1  AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  697
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGATTTTTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  688

seq1  GACAGCCAGGGCTACACAGAGAAACCCTGTCTCTGAAAAGCAAAAAAAAA  747
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  GACAGCCAGGGCTACACAGAGAAACCCTGTTTTTGAAAAGCAAAAAAAAA  738

seq1  AAAAAAAAAAAAAAAAAAAGAGAATGTGACTTTAAAGGATCACCAGTAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAGAGAATGTGACTTTAAAGGATCACCAGTAAG  788

seq1  TTGCTTTACCCATATTATTGCAACTTATTACACTGACTACCTCAGAATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTACCCATATTATTGCAACTTATTACACTGACTACCTCAGAATTT  838

seq1  TCAAAAGTGTGTATATGAGTATATCAAAGATTGTAGAATCCATTGCATGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTGTGTATATGAGTATATCAAAGATTGTAGAATCCATTGCATGG  888

seq1  GAATTC  903
      ||||||
seq2  GAATTC  894