BAC Information

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BAC

Clone NameB6Ng01-059L11
Chromosome4 (Build37)
Map Location 118,058,205 - 118,200,412
singlet/doubletdoublet
Overlap geneBC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik
Upstream gene4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi
Downstream gene6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059L11.bB6Ng01-059L11.g
ACCDH880911DH880912
length1,081998
definitionDH880911|Mus musculus domesticus DNA, BAC clone: B6Ng01-059L11, 5' end.DH880912|Mus musculus domesticus DNA, BAC clone: B6Ng01-059L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,199,336 - 118,200,412)(118,058,205 - 118,059,199)
sequence
gaattcaggggtgtggggagagattgtatggggaaagggaagcctcagaa
acggatcgtgcctagttgactcattcattcccaggaaacctctggttgcc
ttctgggccctctctcgaggcagtcagtattcaaaagacaagagtttgtt
atactaccatgagttcatttagacttttcaaaggttttatacccgttccc
tttctcccctgccctgctctgtgaattcttcccaaagacataggcaaagt
cacatcccaaatgcctctgtactcacaacccacacctgtctgcccatccc
cctccaactgtcatttcacaacccacaacacagtaatgcacacccctcag
atctgcagatacacacactcaactggatctagtttctctgctgcacgcag
gagcccttatggatcaaaagaggcctgagcaccctctcccacgaccccaa
cgtcccctttccgctcccaccttcagacactttgcacagtccgtggaggt
ggcttccggctgagactgctgaacctggacaggtgggagggccagagcag
gcgcttgactcacctggaacactggctaggtgggcggggcggaagtgcag
gtgaagggaaggcggggcaccagccaggatttgcagcgtcctcagcaggg
aggactcactctaacacattgagggggcagtaggcttgttccctccccca
cagctgcggattagtgcaactggaatgcagaaggggtccagcctgtctcc
aaaaggacagatctcagcaggcacccctaccagccctgataaacaagtgg
atttccagtgccggtacaaagttcaaagttgaagccgggaattttacaga
cctgcaaaggcaacaagccagatggtaccatgaggggagagagcatgaac
agtctttctcaggcagagcctgaggaaccagcttgctcagacttcctgaa
aagtgctagcacacagggcgcgtgcatctgtgtgtgggtgaccactgaag
tatctattcaagggtcaaactttctcaggtctcctggtcccttgacttga
ctggcagaaccttggcctccttcttctatcc
gaattctcacctctcgcctactggatggcgggcaatagaagaagtagtgg
ggattggagggaacggtgcggaagtgcagacggctgatctccaggaactt
ctcctgttcaggaagaggccatgaggtcagccatccctgaaaggaccctg
ctctcttctctagaccaggacacgtaactatcctcaacccgggggagaat
ctgcgggtggcctaagcaggacttcacccacttcagttcccctcccagtt
cccacctggatgaggctgtgaagggcatcatgtgcctctcctctgagctg
gcagacatctgtcagagaaatttccggaccagggtctaaattcccagaga
cacggctgctctgaaactcgggctcacttaggtcctcggtctctatactg
gggttggaagagcacatcagggttaagaaccgccaagccccagagcagcc
ctcatctgttgttatctacaaggagtcagaacagagcctgggaggtgacc
atgggagccaaccccctctggcttcgggctctgccctacacatttcttac
agtaagggtggcccctttctgatttgcaccactgggtggagggtggtacc
actcagcatacaaggagaacagaagcagcaaagcttgtcagagagaatgt
gtgctcacttggagagtgcgggagatctgggcttcgagagaaatcactgg
ggtggagccagtgggaccctcgcttttctagctgtttttcctcagcagca
acactgcataagctaacagagcatctaccgtcctacctttgtcctttcct
gtatgtagccactgtggggactcagcggatgaacgatcactcccttcagt
tgggaaactcatatggattaattatggaagacatcagaagaatgtctgtg
tacactccttgagatgggctagccttactcagctaaactagaacatatta
atttaagagaaggtgggatatgcctgggagagagactgtctaccaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118199336_118200412
seq2: B6Ng01-059L11.b_49_1115 (reverse)

seq1  GGCCAAGGGTCTGGCAAGTCAAGTCAAGGGGACCAGGAGACCTGAAGAAA  50
      |||||||| ||| || ||||||||||| |||||||||||||||| |||||
seq2  GGCCAAGGTTCT-GCCAGTCAAGTCAA-GGGACCAGGAGACCTG-AGAAA  47

seq1  GGTTTGAACCCCTTGAGTAGATACTTCAGTGTACACACACACACAGGTGC  100
       ||||||  ||||||| ||||||||||||||  ||| ||||||||| |||
seq2  -GTTTGA--CCCTTGAATAGATACTTCAGTGGTCACCCACACACAGATGC  94

seq1  ACGCGCACCGTGTGCTAGCACTTTTCAGGGAAGTCTGGAGCAAGCTTGGT  150
      |||||| | |||||||||||||||||| |||||||| |||||||||  | 
seq2  ACGCGCCCTGTGTGCTAGCACTTTTCA-GGAAGTCT-GAGCAAGCT--GG  140

seq1  TTCCTCAGGCTCTGCCTG-GGAAGACTGTTCATTGCTCTCTCCCCTCATG  199
      |||||||||||||||||| | ||||||||||| |||||||||||||||||
seq2  TTCCTCAGGCTCTGCCTGAGAAAGACTGTTCA-TGCTCTCTCCCCTCATG  189

seq1  GTACCATCTGGCTTGTTGCCTTTGCAGGTCTGTAAAACTCCCGGCTTCAA  249
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTACCATCTGGCTTGTTGCCTTTGCAGGTCTGTAAAATTCCCGGCTTCAA  239

seq1  CTTTGAACTTTGTACCGGCACTGGAAATCCACTTGTTTATCAGGGCTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACTTTGTACCGGCACTGGAAATCCACTTGTTTATCAGGGCTGGT  289

seq1  AGGGGTGCCTGCTGAGATCTGTCCTTTTGGAGACAGGCTGGACCCCTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGCCTGCTGAGATCTGTCCTTTTGGAGACAGGCTGGACCCCTTCT  339

seq1  GCATTCCAGTTGCACTAATCCGCAGCTGTGGGGGAGGGAACAAGCCTACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCAGTTGCACTAATCCGCAGCTGTGGGGGAGGGAACAAGCCTACT  389

seq1  GCCCCCTCAATGTGTTAGAGTGAGTCCTCCCTGCTGAGGACGCTGCAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTCAATGTGTTAGAGTGAGTCCTCCCTGCTGAGGACGCTGCAAAT  439

seq1  CCTGGCTGGTGCCCCGCCTTCCCTTCACCTGCACTTCCGCCCCGCCCACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGGTGCCCCGCCTTCCCTTCACCTGCACTTCCGCCCCGCCCACC  489

seq1  TAGCCAGTGTTCCAGGTGAGTCAAGCGCCTGCTCTGGCCCTCCCACCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTGTTCCAGGTGAGTCAAGCGCCTGCTCTGGCCCTCCCACCTGT  539

seq1  CCAGGTTCAGCAGTCTCAGCCGGAAGCCACCTCCACGGACTGTGCAAAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTCAGCAGTCTCAGCCGGAAGCCACCTCCACGGACTGTGCAAAGT  589

seq1  GTCTGAAGGTGGGAGCGGAAAGGGGACGTTGGGGTCGTGGGAGAGGGTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGGTGGGAGCGGAAAGGGGACGTTGGGGTCGTGGGAGAGGGTGC  639

seq1  TCAGGCCTCTTTTGATCCATAAGGGCTCCTGCGTGCAGCAGAGAAACTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTCTTTTGATCCATAAGGGCTCCTGCGTGCAGCAGAGAAACTAG  689

seq1  ATCCAGTTGAGTGTGTGTATCTGCAGATCTGAGGGGTGTGCATTACTGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTTGAGTGTGTGTATCTGCAGATCTGAGGGGTGTGCATTACTGTG  739

seq1  TTGTGGGTTGTGAAATGACAGTTGGAGGGGGATGGGCAGACAGGTGTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGTTGTGAAATGACAGTTGGAGGGGGATGGGCAGACAGGTGTGGG  789

seq1  TTGTGAGTACAGAGGCATTTGGGATGTGACTTTGCCTATGTCTTTGGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTACAGAGGCATTTGGGATGTGACTTTGCCTATGTCTTTGGGAA  839

seq1  GAATTCACAGAGCAGGGCAGGGGAGAAAGGGAACGGGTATAAAACCTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGCAGGGCAGGGGAGAAAGGGAACGGGTATAAAACCTTTG  889

seq1  AAAAGTCTAAATGAACTCATGGTAGTATAACAAACTCTTGTCTTTTGAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTAAATGAACTCATGGTAGTATAACAAACTCTTGTCTTTTGAAT  939

seq1  ACTGACTGCCTCGAGAGAGGGCCCAGAAGGCAACCAGAGGTTTCCTGGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGCCTCGAGAGAGGGCCCAGAAGGCAACCAGAGGTTTCCTGGGA  989

seq1  ATGAATGAGTCAACTAGGCACGATCCGTTTCTGAGGCTTCCCTTTCCCCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGAGTCAACTAGGCACGATCCGTTTCTGAGGCTTCCCTTTCCCCA  1039

seq1  TACAATCTCTCCCCACACCCCTGAATTC  1077
      ||||||||||||||||||||||||||||
seq2  TACAATCTCTCCCCACACCCCTGAATTC  1067

seq1: chr4_118058205_118059199
seq2: B6Ng01-059L11.g_69_1066

seq1  GAATTCTCACCTCTCGCCTACTGGATGGCGGGCAATAGAAGAAGTAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTCTCGCCTACTGGATGGCGGGCAATAGAAGAAGTAGTGG  50

seq1  GGATTGGAGGGAACGGTGCGGAAGTGCAGACGGCTGATCTCCAGGAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGAGGGAACGGTGCGGAAGTGCAGACGGCTGATCTCCAGGAACTT  100

seq1  CTCCTGTTCAGGAAGAGGCCATGAGGTCAGCCATCCCTGAAAGGACCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTCAGGAAGAGGCCATGAGGTCAGCCATCCCTGAAAGGACCCTG  150

seq1  CTCTCTTCTCTAGACCAGGACACGTAACTATCCTCAACCCGGGGGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTCTAGACCAGGACACGTAACTATCCTCAACCCGGGGGAGAAT  200

seq1  CTGCGGGTGGCCTAAGCAGGACTTCACCCACTTCAGTTCCCCTCCCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGGTGGCCTAAGCAGGACTTCACCCACTTCAGTTCCCCTCCCAGTT  250

seq1  CCCACCTGGATGAGGCTGTGAAGGGCATCATGTGCCTCTCCTCTGAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGGATGAGGCTGTGAAGGGCATCATGTGCCTCTCCTCTGAGCTG  300

seq1  GCAGACATCTGTCAGAGAAATTTCCGGACCAGGGTCTAAATTCCCAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATCTGTCAGAGAAATTTCCGGACCAGGGTCTAAATTCCCAGAGA  350

seq1  CACGGCTGCTCTGAAACTCGGGCTCACTTAGGTCCTCGGTCTCTATACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTGCTCTGAAACTCGGGCTCACTTAGGTCCTCGGTCTCTATACTG  400

seq1  GGGTTGGAAGAGCACATCAGGGTTAAGAACCGCCAAGCCCCAGAGCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGAAGAGCACATCAGGGTTAAGAACCGCCAAGCCCCAGAGCAGCC  450

seq1  CTCATCTGTTGTTATCTACAAGGAGTCAGAACAGAGCCTGGGAGGTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGTTGTTATCTACAAGGAGTCAGAACAGAGCCTGGGAGGTGACC  500

seq1  ATGGGAGCCAACCCCCTCTGGCTTCGGGCTCTGCCCTACACATTTCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGCCAACCCCCTCTGGCTTCGGGCTCTGCCCTACACATTTCTTAC  550

seq1  AGTAAGGGTGGCCCCTTTCTGATTTGCACCACTGGGTGGAGGGTGGTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGGTGGCCCCTTTCTGATTTGCACCACTGGGTGGAGGGTGGTACC  600

seq1  ACTCAGCATACAAGGAGAACAGAAGCAGCAAAGCTTGTCAGAGAGAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCATACAAGGAGAACAGAAGCAGCAAAGCTTGTCAGAGAGAATGT  650

seq1  GTGCTCACTTGGAGAGTGCGGGAGATCTGGGCTTCGAGAGAAATCACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCACTTGGAGAGTGCGGGAGATCTGGGCTTCGAGAGAAATCACTGG  700

seq1  GGTGGAGCCAGTGGGACCCTCGCTTTTCTAGCTGTTTTTTCCTCAGCAGC  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGTGGAGCCAGTGGGACCCTCGCTTTTCTAGCTG-TTTTTCCTCAGCAGC  749

seq1  AACACTGCATAAGCTAACAGAGCATCTACCGTCCTACCTTTGTCCTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGCATAAGCTAACAGAGCATCTACCGTCCTACCTTTGTCCTTTCC  799

seq1  TGTATGTAGCCACTGTGGGGACTCAGC-GATGAACGATACACTCCCTTCA  849
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  TGTATGTAGCCACTGTGGGGACTCAGCGGATGAACGAT-CACTCCCTTCA  848

seq1  GTTGGGGAACTCATAT-GATTAA-TATGGAAGACATCAGAAGAATGTCTG  897
      |||||| ||||||||| |||||| ||||||||||||||||||||||||||
seq2  GTTGGGAAACTCATATGGATTAATTATGGAAGACATCAGAAGAATGTCTG  898

seq1  TGTACACTCC-TGAGAATGGGCTAGCCCTAACTCAGCT-AACTAGAACAT  945
      |||||||||| |||| ||||||||| ||| |||||||| |||||||||||
seq2  TGTACACTCCTTGAG-ATGGGCTAG-CCTTACTCAGCTAAACTAGAACAT  946

seq1  ATTAATTTAGGAG-AGGTGGGATATGCCTGGGAGAGAGACTG-CTACCAA  993
      ||||||||| ||| |||||||||||||||||||||||||||| |||||||
seq2  ATTAATTTAAGAGAAGGTGGGATATGCCTGGGAGAGAGACTGTCTACCAA  996

seq1  AG  995
      ||
seq2  AG  998