BAC Information

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BAC

Clone NameB6Ng01-059M21
Chromosome4 (Build37)
Map Location 83,957,336 - 84,167,466
singlet/doubletdoublet
Overlap geneBnc2
Upstream gene1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2, A930009N24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059M21.bB6Ng01-059M21.g
ACCDH880973DH880974
length1,0211,025
definitionDH880973|Mus musculus domesticus DNA, BAC clone: B6Ng01-059M21, 5' end.DH880974|Mus musculus domesticus DNA, BAC clone: B6Ng01-059M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,957,336 - 83,958,363)(84,166,446 - 84,167,466)
sequence
gaattcaatgttgccattcaggggctgtttcaggctacctttcaagtctt
acttcatatgcacactgccacccagtcctgggcaacatgactttcacaga
gcattgtgcatgtctcaacaaccactttctacttctaccattccttctac
ctgcaatgatgtctcatgtgcgaactcatgactgttcaaagtccacctct
caagtgctgtcttaaacgctgtgatgttcttacaaactccatccttctgg
gggagctgtcttgtacctatatgctacatgtaatctgggaagactcttta
ctgtttaagcagccccctgagtatcagaattctctaacactcatctttct
acatgaggtaccgcaagtgtcatctcatgaacttttgaaatgcactgctt
ttcttaaatgtaattcatctgttgtacactaacaactagttatgtctgta
aacccagctgttctctttagagacgcttacagaaacaaacagaaagcagc
cactgtctgtgctcagaggcaggttttctactgtctgctcagtcacattt
gcaaatgcagatgctcaaaacatttcacgccacacactcctgaaacaaca
aataagctttcagacacagcaggaattcattttttccagaaatgctttta
agatcttggctaattttatgttcctcaattcattttgtcacaggacctgt
aagtttagacccaatcatcacaattttctaaactattgaaataataattt
taaaaaaaaggtgaaaaaggatgtttcaccacagaagaatatgctagatg
aaatttaggaaatccagcatacattaaggggtaccaaatgcaaatgttaa
gaatttgaatatgaatttgaaaaactgacaactagaagccatgacaacat
gatatcatgacaaacgatatcatggacaaacatgatagccacagtgaatt
actgaatggccaactgatatattagacatcagattcttataaaccttagt
cattaacttctggatagaatt
gaattcattaaaattttcagtcatgtacccattcagtaattgagattgaa
accaggatcatttgttcagagagtcttgtactactgagctcatctttgat
tctatgatggagacaggatattaaccttgaggaagggaaaagaagaatac
acgctagaggttgtggcttgttgtagggccttcatagtctgtagcccctt
gagttgttctgtagctttggtccctagggaagcttgactgtttagaaaca
acggagtaaagctttaggaaagcatttcttccttcacctgtaggaaggga
gagaacagtgttaccaggtccgggaggtccaaaatcatctccgtctttct
gtgataccctctgtgacaaattctattgcacctacttatccttgtatcgc
cagtcttaaccatttgcttaaattttaaacatttcctatttgtgctagat
aaaaagccggaacaagtgagttgtagaaatcgcttggcccttctggaaat
tatttgtacttttttgaacatttctccttttcctttcatttattcttctc
tcatgcaattcctcccctccctccattcctcccagttcctctcccccaga
tccactgctcctcattttcccttcagaagagaacagatctcccagggata
tcagccaaacatgatctaacacattgcaataagaagaggcacaaacgctt
atatcaaggctggacaaggcaacccagtaggaggaaaagggtcctaagag
cagacaaaaatgtcagagacacacccccacccctccactctcactgttag
gagtcttacaaaaaccctaagctaaacaccacaaggtattcacagaggac
atatcctagacccattcaggtctgtgattggagcttctgtctctgtgaac
cctgtaggctgcttagtggttctgtgggcatgttcttcagaacactctgc
tctagtgtctaccactaccactacccccacttcccagggatggctggagc
cttgaggatgtatccacatctgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_83957336_83958363
seq2: B6Ng01-059M21.b_45_1065

seq1  GAATTCAATGTTGCCATTCAGGGGCTGTTTCAGGCTACCTTTCAAGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTTGCCATTCAGGGGCTGTTTCAGGCTACCTTTCAAGTCTT  50

seq1  ACTTCATATGCACACTGCCACCCAGTCCTGGGCAACATGACTTTCACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATATGCACACTGCCACCCAGTCCTGGGCAACATGACTTTCACAGA  100

seq1  GCATTGTGCATGTCTCAACAACCACTTTCTACTTCTACCATTCCTTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGCATGTCTCAACAACCACTTTCTACTTCTACCATTCCTTCTAC  150

seq1  CTGCAATGATGTCTCATGTGCGAACTCATGACTGTTCAAAGTCCACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATGATGTCTCATGTGCGAACTCATGACTGTTCAAAGTCCACCTCT  200

seq1  CAAGTGCTGTCTTAAACGCTGTGATGTTCTTACAAACTCCATCCTTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTGTCTTAAACGCTGTGATGTTCTTACAAACTCCATCCTTCTGG  250

seq1  GGGAGCTGTCTTGTACCTATATGCTACATGTAATCTGGGAAGACTCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTGTCTTGTACCTATATGCTACATGTAATCTGGGAAGACTCTTTA  300

seq1  CTGTTTAAGCAGCCCCCTGAGTATCAGAATTCTCTAACACTCATCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAGCAGCCCCCTGAGTATCAGAATTCTCTAACACTCATCTTTCT  350

seq1  ACATGAGGTACCGCAAGTGTCATCTCATGAACTTTTGAAATGCACTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGTACCGCAAGTGTCATCTCATGAACTTTTGAAATGCACTGCTT  400

seq1  TTCTTAAATGTAATTCATCTGTTGTACACTAACAACTAGTTATGTCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAATGTAATTCATCTGTTGTACACTAACAACTAGTTATGTCTGTA  450

seq1  AACCCAGCTGTTCTCTTTAGAGACGCTTACAGAAACAAACAGAAAGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCTGTTCTCTTTAGAGACGCTTACAGAAACAAACAGAAAGCAGC  500

seq1  CACTGTCTGTGCTCAGAGGCAGGTTTTCTACTGTCTGCTCAGTCACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTGTGCTCAGAGGCAGGTTTTCTACTGTCTGCTCAGTCACATTT  550

seq1  GCAAATGCAGATGCTC-AAACATTTCACGCCACACACTCCTGAAACAACA  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCAAATGCAGATGCTCAAAACATTTCACGCCACACACTCCTGAAACAACA  600

seq1  AATAAGCTTTCAGACACAGCAGGAATTCATTTTTTCCAGAAATGCTTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCTTTCAGACACAGCAGGAATTCATTTTTTCCAGAAATGCTTTTA  650

seq1  AGATCTTGGCTAATTTTATGTTCCTCAATTCATTTTGTCACAGGACCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTGGCTAATTTTATGTTCCTCAATTCATTTTGTCACAGGACCTGT  700

seq1  AAGTTTAGACCCAATCATCACAATTTTCTAAACTATTGAAATAATAATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGACCCAATCATCACAATTTTCTAAACTATTGAAATAATAATTT  750

seq1  T-AAAAAAAGGTGAAAAAGGATG-TTCACCACAGAAGAATATGCTAGATG  797
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAAAAAAAAGGTGAAAAAGGATGTTTCACCACAGAAGAATATGCTAGATG  800

seq1  AAAATTTAGGAAAATCCAGCATACATTAAGGGGTACCAAATGCAAATGTT  847
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -AAATTTAGG-AAATCCAGCATACATTAAGGGGTACCAAATGCAAATGTT  848

seq1  AAGAATTTGAATATGAATTTGAAAAACTGACAAACTAGAAGCCATGACAA  897
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  AAGAATTTGAATATGAATTTGAAAAACTGAC-AACTAGAAGCCATGAC-A  896

seq1  ACATGATATCATGACAAACGATATCAT-GACAAACATGATAGCCAACAGT  946
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  ACATGATATCATGACAAACGATATCATGGACAAACATGATAGCC-ACAGT  945

seq1  GAATTACTGAATGGCCAAACTGA-ATATTAGAACATCAAGATTCTTAATT  995
      |||||||||||||||| |||||| ||||||| ||||| |||||||||   
seq2  GAATTACTGAATGGCC-AACTGATATATTAG-ACATC-AGATTCTTA---  989

seq1  AAAACCTTAAGTCATTAACTTCTGGATAGAATT  1028
       ||||||| ||||||||||||||||||||||||
seq2  TAAACCTT-AGTCATTAACTTCTGGATAGAATT  1021

seq1: chr4_84166446_84167466
seq2: B6Ng01-059M21.g_91_1097 (reverse)

seq1  GAACAGATGTGGATTACATCACTCAGAGCTCAGGCAATCCCTGGGGAAGT  50
      ||||||||||||| |||||| ||||  ||||  || |||||| |||||||
seq2  GAACAGATGTGGA-TACATC-CTCAAGGCTCCAGCCATCCCT-GGGAAGT  47

seq1  GGGGGTAGGTGGTATGTGGTAGGACACTTAGGAGCCAGAGTGGTCCTGGA  100
      ||||||| |||||| |||||| ||||||   ||| |||||| || ||| |
seq2  GGGGGTA-GTGGTA-GTGGTA-GACACT--AGAG-CAGAGT-GTTCTGAA  90

seq1  GAACATGGCCCACAGAACCAACTAAGCAGGCCTCACAGGGTTCACAGAGA  150
      |||||| |||||||||||| |||||||| |||| ||||||||||||||||
seq2  GAACAT-GCCCACAGAACC-ACTAAGCA-GCCT-ACAGGGTTCACAGAGA  136

seq1  CAGAAGCTCCAATCACAGAACCTGAATGGGTCTAGGATATGTCCTCTGTG  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGAAGCTCCAATCACAG-ACCTGAATGGGTCTAGGATATGTCCTCTGTG  185

seq1  TATACCTTGTGGTTGTTTAGCTTAGGGTTTTTGTAAGACTCCTAACAGTG  250
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATACCTTGTGG-TGTTTAGCTTAGGGTTTTTGTAAGACTCCTAACAGTG  234

seq1  GGAGTGG-GGGGTGGGGGTGTGTCTCTGACATTTTTGTCTGCTCTTAGGA  299
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGAGGGGTGGGGGTGTGTCTCTGACATTTTTGTCTGCTCTTAGGA  284

seq1  CCCTTTTCCTCCTACTGGGTTGCCTTGTCCAGCCTTGATATAAACGTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCTTTTCCTCCTACTGGGTTGCCTTGTCCAGCCTTGATATAAGCGTTTG  334

seq1  TGCCTCTTCTTATTGCAATGTGTTAGATCATGTTTGGCTGATATCCCTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTCTTATTGCAATGTGTTAGATCATGTTTGGCTGATATCCCTGG  384

seq1  GAGATCTGTTCTCTTCTGAAGGG-AAATGAGGAGCAGTGGATCTGGGGGA  448
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAGATCTGTTCTCTTCTGAAGGGAAAATGAGGAGCAGTGGATCTGGGGGA  434

seq1  GAGGAACTGGGAGGAATGGAGGGAGGGGAGGAATTGCATGAGAGAAGAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACTGGGAGGAATGGAGGGAGGGGAGGAATTGCATGAGAGAAGAAT  484

seq1  AAATGAAAGGAAAAGGAGAAATGTTCAAAAAAGTACAAATAATTTCCAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGGAAAAGGAGAAATGTTCAAAAAAGTACAAATAATTTCCAGA  534

seq1  AGGGCCAAGCGATTTCTACAACTCACTTGTTCCGGCTTTTTATCTAGCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAAGCGATTTCTACAACTCACTTGTTCCGGCTTTTTATCTAGCAC  584

seq1  AAATAGGAAATGTTTAAAATTTAAGCAAATGGTTAAGACTGGCGATACAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAAATGTTTAAAATTTAAGCAAATGGTTAAGACTGGCGATACAA  634

seq1  GGATAAGTAGGTGCAATAGAATTTGTCACAGAGGGTATCACAGAAAGACG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGTAGGTGCAATAGAATTTGTCACAGAGGGTATCACAGAAAGACG  684

seq1  GAGATGATTTTGGACCTCCCGGACCTGGTAACACTGTTCTCTCCCTTCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATTTTGGACCTCCCGGACCTGGTAACACTGTTCTCTCCCTTCCT  734

seq1  ACAGGTGAAGGAAGAAATGCTTTCCTAAAGCTTTACTCCGTTGTTTCTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGAAGGAAGAAATGCTTTCCTAAAGCTTTACTCCGTTGTTTCTAA  784

seq1  ACAGTCAAGCTTCCCTAGGGACCAAAGCTACAGAACAACTCAAGGGGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAAGCTTCCCTAGGGACCAAAGCTACAGAACAACTCAAGGGGCTA  834

seq1  CAGACTATGAAGGCCCTACAACAAGCCACAACCTCTAGCGTGTATTCTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTATGAAGGCCCTACAACAAGCCACAACCTCTAGCGTGTATTCTTC  884

seq1  TTTTCCCTTCCTCAAGGTTAATATCCTGTCTCCATCATAGAATCAAAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTCCTCAAGGTTAATATCCTGTCTCCATCATAGAATCAAAGAT  934

seq1  GAGCTCAGTAGTACAAGACTCTCTGAACAAATGATCCTGGTTTCAATCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGTAGTACAAGACTCTCTGAACAAATGATCCTGGTTTCAATCTC  984

seq1  AATTACTGAATGGGTACATGACT  1021
      |||||||||||||||||||||||
seq2  AATTACTGAATGGGTACATGACT  1007