BAC Information

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BAC

Clone NameB6Ng01-060C13
Chromosome4 (Build37)
Map Location 86,259,196 - 86,369,351
singlet/doubletdoublet
Overlap geneLOC100040388, Adfp
Upstream geneA930009N24, LOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik
Downstream geneEG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060C13.bB6Ng01-060C13.g
ACCDH881219DH881220
length1,1311,070
definitionDH881219|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C13, 5' end.DH881220|Mus musculus domesticus DNA, BAC clone: B6Ng01-060C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,259,196 - 86,260,169)(86,368,272 - 86,369,351)
sequence
gaattcattttagggaagattcctgctattaatattgcttttcctgttat
tattaaaaatatataacaatcactaagtagtagcacacccctttggagca
gatctctgcagatccatgaagatgtattgtcttgtagtgatgccatatag
acaaatagatgacttaagtcatcatgatgatcctataagaattcctaaaa
ttttatctgtgattattaagctcatttttactgggactcctattaagtcg
tttttgatagtcaaaactgcaatgagaactcggccaattttccacatgtt
accagttcttagatggtaaccagattttctcctattcagagcacattcca
agaggtgataaaacaattaaccaaaagtcatataaagggaactaatgatt
tattataggtgctaggacagaagataaaatattgactgggtttatctata
caaaacttcactaataacttagttatggttttaaaccttcagtgaacctg
tggagctgagacaggtgatggatgtttagccagaaaattattcctaatgg
atacgaatgtagacattctctattgtaaacttctatttcaatttatgatt
tgattttttgtgtgaactttgtgatcatgtattctgaaagatgtataggt
actgaagacaaatgagaaagaagaattttttaaagcctttccccacttag
actagaattttttgcctttccccccttagaagaatttttcccttttcctt
ttcccacttaggatcttttcgcttttccccttagatggcttccataggaa
actttttacaacttagtaataaatgctataataacttttctaagtgtccc
tttttctcctgtgacttctgactagcaggctgaaagttagagcccagcag
ttctgccgagatggaacaaaggcacattgtttaatcctctgctgttaggc
tacagttataatcacctaaaccagcagtcttttactctcagaaggacgtt
ttaggaggtatcatcagcattcagtacagtagagagctagaagcctcaga
ccttcgacttaaagcatcatcgagtcctacttatgactccacacttcact
ctctcaggctaggaggctccttacctaagta
gaattcaagaccattcagagcaacatagtctatgaattccagatcagcat
gagctccacagtgagattttttttttttaatctcacaagaaacaaaacca
aaatcaaaacaaacagctgggaggctgaggccagcagatctcggagtgtg
aggccagcctggtctccagagtgtgatctagggatagccagggttatgca
tagaaaccctgtttctaaaaaccaaaaaccaaaccaaaccaaacagccaa
gattaaatagatttccagttgtgctggtgaaggcctataatcctagcaac
cgagagtctgaagcaagaggactgccgtgaatttgaggccagcttgggct
acatatggagtaccacaccatccaaggactacagagcaaagacccggatt
ttttaaaagaccaacaaacaaaaaacaaaagagagagataatgaatatgt
cacttgattatagtcttagctagcgtgtgagttaggcaggaattcgggag
aggacaggaagggaaatgagttgttctggggacaaagcaaatgggtgcca
tggtgccaagatgcgtacagtgtaacggagagctatggtgaatgatacag
agaaccactggagaaaagccgacatccacacaaaagaatgaaaccagaca
ctcgtctcaccccgtggggctggggatttagcttgtctagcaaacctaag
gtgccaggtttgttctattgcatacaaccagacatgatggcacacatgtg
taattctagcatggaggaattgcagcaccgaggcaggaggattaggagtt
ctatatcatcttctgcatatgcagttcaaggccagcctgggctacgtgag
actgtgtctcaaatacacacatacaatgttaaagaacttgcgtaagtatt
tccttcttggaccttggagttttcataatttctcttaataatcttcatca
cttcaccataaaataaaagaaatccaaatattagagcataagttagtggg
agggggacgatagcctcgggacgtgggagagtcagggacatcaactgcca
tgcttgtttatttgtttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_86259196_86260169
seq2: B6Ng01-060C13.b_217_1177

seq1  ATCATGATGATCCTATAAGAATTCCTAAAATTTTATCTGTGATTATTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATGATCCTATAAGAATTCCTAAAATTTTATCTGTGATTATTAAG  50

seq1  CTCATTTTTACTGGGACTCCTATTAAGTCGTTTTTGATAGTCAAAACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTACTGGGACTCCTATTAAGTCGTTTTTGATAGTCAAAACTGC  100

seq1  AATGAGAACTCGGCCAATTTTCCACATGTTACCAGTTCTTAGATGGTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAACTCGGCCAATTTTCCACATGTTACCAGTTCTTAGATGGTAAC  150

seq1  CAGATTTTCTCCTATTCAGAGCACATTCCAAGAGGTGATAAAACAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTCTCCTATTCAGAGCACATTCCAAGAGGTGATAAAACAATTAA  200

seq1  CCAAAAGTCATATAAAGGGAACTAATGATTTATTATAGGTGCTAGGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGTCATATAAAGGGAACTAATGATTTATTATAGGTGCTAGGACAG  250

seq1  AAGATAAAATATTGACTGGGTTTATCTATACAAAACTTCACTAATAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAATATTGACTGGGTTTATCTATACAAAACTTCACTAATAACTT  300

seq1  AGTTATGGTTTTAAACCTTCAGTGAACCTGTGGAGCTGAGACAGGTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGGTTTTAAACCTTCAGTGAACCTGTGGAGCTGAGACAGGTGATG  350

seq1  GATGTTTAGCCAGAAAATTATTCCTAATGGATACGAATGTAGACATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTAGCCAGAAAATTATTCCTAATGGATACGAATGTAGACATTCTC  400

seq1  TATTGTAAACTTCTATTTCAATTTATGATTTGATTTTTTGTGTGAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAAACTTCTATTTCAATTTATGATTTGATTTTTTGTGTGAACTTT  450

seq1  GTGATCATGTATTCTGAAAGATGTATAGGTACTGAAGACAAATGAGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCATGTATTCTGAAAGATGTATAGGTACTGAAGACAAATGAGAAAG  500

seq1  AAGAATTTTTTAAAGCCTTTCCCCACTTAGACTAGAATTTTTTGCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTTTTAAAGCCTTTCCCCACTTAGACTAGAATTTTTTGCCTTTC  550

seq1  CCCCCTTAGAAGAATTTTTCCCTTTTCCTTTTCCCACTTAGGATCTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTAGAAGAATTTTTCCCTTTTCCTTTTCCCACTTAGGATCTTTTC  600

seq1  GCTTTTCCCCTTAGATGGCTTCCATAGGAAACTTTTTACAACTTAGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCCCTTAGATGGCTTCCATAGGAAACTTTTTACAACTTAGTAAT  650

seq1  AAATGCTATAATAACTTTTCTAAGTGTCCCTTTTTCTTCCTGTGACTTCT  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAATGCTATAATAACTTTTCTAAGTGTCCCTTTTTC-TCCTGTGACTTCT  699

seq1  GACTAGCAGGCTGAAAGTTAGAGCCCAGCAGTTCCTGCCGAGATGGAACA  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACTAGCAGGCTGAAAGTTAGAGCCCAGCAGTT-CTGCCGAGATGGAACA  748

seq1  AAGGCACATTGTTTAATCCTCTGCTGTTAGGCTACAGTTATTAATCACCT  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGGCACATTGTTTAATCCTCTGCTGTTAGGCTACAGTTA-TAATCACCT  797

seq1  AAACCAGCAGTCTTTTACCCTCAGAAGGACGTTTTAGAAGTTATCATCAG  850
      |||||||||||||||||| |||||||||||||||||| || |||||||||
seq2  AAACCAGCAGTCTTTTACTCTCAGAAGGACGTTTTAGGAGGTATCATCAG  847

seq1  CATTTCAGTACAGTTAGAGAGCTAGAAAGCCCCAAGACCTCAGACTTTAA  900
      || |||||||||| ||||||||||| ||||| | ||||||  ||| ||||
seq2  CA-TTCAGTACAG-TAGAGAGCTAG-AAGCCTC-AGACCTTCGAC-TTAA  892

seq1  AGCCATCACCAGAGTCCTACTCTATGACTCCACCACTACACTCTC-CAGG  949
      || ||||| | |||||||||| |||||||||| |||| ||||||| ||||
seq2  AG-CATCATC-GAGTCCTACT-TATGACTCCA-CACTTCACTCTCTCAGG  938

seq1  CTAGGAGGCTCCCTTCACCTAAGTA  974
      ||||||||||||  | |||||||||
seq2  CTAGGAGGCTCC--TTACCTAAGTA  961

seq1: chr4_86368272_86369351
seq2: B6Ng01-060C13.g_69_1135 (reverse)

seq1  AAACAAATAAACCAGCATTGCAGTTCTGATGTCCACTGACTTCTCCCACG  50
      |||||||||||| ||||| |||||  |||||||| ||||| |||||||||
seq2  AAACAAATAAACAAGCATGGCAGT--TGATGTCC-CTGAC-TCTCCCACG  46

seq1  TCCCG-GGCTATCCGTTCCCCCTTCCCACCTAACTTATGCTCTAATATTA  99
      ||||| |||||| |||  |||| ||||| |||||||||||||||||||| 
seq2  TCCCGAGGCTAT-CGT--CCCCCTCCCA-CTAACTTATGCTCTAATATT-  91

seq1  TGGATTTCTTTTTATTTTATGGTGAAGTGAATGAAGATTTATTAAGGAGA  149
      |||||||| |||||||||||||||||||| ||||||| ||||||| ||||
seq2  TGGATTTC-TTTTATTTTATGGTGAAGTG-ATGAAGA-TTATTAA-GAGA  137

seq1  AATTATGAAAACTCCCAAGGTTCCAAGGAGG-AATACTTACGCAAGTTCT  198
      ||||||||||||| |||||| |||||| ||| ||||||||||||||||||
seq2  AATTATGAAAACT-CCAAGG-TCCAAGAAGGAAATACTTACGCAAGTTCT  185

seq1  TTAACATTGTATGTGTGTATTTGAGACACAGTCTCACGTAGCCCAGGCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTGTATGTGTGTATTTGAGACACAGTCTCACGTAGCCCAGGCTG  235

seq1  GCCTTGAACTGCATATGCAGAAGATGATATAGAACTCCTAATCCTCCTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAACTGCATATGCAGAAGATGATATAGAACTCCTAATCCTCCTGC  285

seq1  CTCGGTGCTGCAATTCCTCCATGCTAGAATTACACATGTGTGCCATCATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTGCTGCAATTCCTCCATGCTAGAATTACACATGTGTGCCATCATG  335

seq1  TCTGGTTGTATGCAATAGAACAAACCTGGCACCTTAGGTTTGCTAGACAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTGTATGCAATAGAACAAACCTGGCACCTTAGGTTTGCTAGACAA  385

seq1  GCTAAATCCCCAGCCCCACGGGGTGAGACGAGTGTCTGGTTTCATTCTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATCCCCAGCCCCACGGGGTGAGACGAGTGTCTGGTTTCATTCTTT  435

seq1  TGTGTGGATGTCGGCTTTTCTCCAGTGGTTCTCTGTATCATTCACCATAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGATGTCGGCTTTTCTCCAGTGGTTCTCTGTATCATTCACCATAG  485

seq1  CTCTCCGTTACACTGTACGCATCTTGGCACCATGGCACCCATTTGCTTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGTTACACTGTACGCATCTTGGCACCATGGCACCCATTTGCTTTG  535

seq1  TCCCCAGAACAACTCATTTCCCTTCCTGTCCTCTCCCGAATTCCTGCCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGAACAACTCATTTCCCTTCCTGTCCTCTCCCGAATTCCTGCCTA  585

seq1  ACTCACACGCTAGCTAAGACTATAATCAAGTGACATATTCATTATCTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACGCTAGCTAAGACTATAATCAAGTGACATATTCATTATCTCTC  635

seq1  TCTTTTGTTTTTTGTTTGTTGGTCTTTTAAAAAATCCGGGTCTTTGCTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTTTTTGTTTGTTGGTCTTTTAAAAAATCCGGGTCTTTGCTCT  685

seq1  GTAGTCCTTGGATGGTGTGGTACTCCATATGTAGCCCAAGCTGGCCTCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCTTGGATGGTGTGGTACTCCATATGTAGCCCAAGCTGGCCTCAA  735

seq1  ATTCACGGCAGTCCTCTTGCTTCAGACTCTCGGTTGCTAGGATTATAGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACGGCAGTCCTCTTGCTTCAGACTCTCGGTTGCTAGGATTATAGGC  785

seq1  CTTCACCAGCACAACTGGAAATCTATTTAATCTTGGCTGTTTGGTTTGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCAGCACAACTGGAAATCTATTTAATCTTGGCTGTTTGGTTTGGT  835

seq1  TTGGTTTTTGGTTTTTAGAAACAGGGTTTCTATGCATAACCCTGGCTATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTGGTTTTTAGAAACAGGGTTTCTATGCATAACCCTGGCTATC  885

seq1  CCTAGATCACACTCTGGAGACCAGGCTGGCCTCACACTCCGAGATCTGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATCACACTCTGGAGACCAGGCTGGCCTCACACTCCGAGATCTGCT  935

seq1  GGCCTCAGCCTCCCAGCTGTTTGTTTTGATTTTGGTTTTGTTTCTTGTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGCCTCCCAGCTGTTTGTTTTGATTTTGGTTTTGTTTCTTGTGA  985

seq1  GATTAAAAAAAAAAAATCTCACTGTGGAGCTCATGCTGATCTGGAATTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAAAAAAAAATCTCACTGTGGAGCTCATGCTGATCTGGAATTCA  1035

seq1  TAGACTATGTTGCTCTGAATGGTCTTGAATTC  1080
      ||||||||||||||||||||||||||||||||
seq2  TAGACTATGTTGCTCTGAATGGTCTTGAATTC  1067