BAC Information

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BAC

Clone NameB6Ng01-060G18
Chromosome4 (Build37)
Map Location 66,481,115 - 66,482,213
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499
Downstream geneTlr4, LOC100039379, Hmgb1-rs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060G18.bB6Ng01-060G18.g
ACCDH881398DH881399
length1,0821,175
definitionDH881398|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G18, 5' end.DH881399|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgcacactggatcattctttcattcttgtggaaacaagagactc
atatttagcatccagaacaaacttgccttcatttttgagcaattataagg
tgtggagggagagaaatatctatactatttctttgtgatccgtgggaagc
aaactgcttgagattaattaaagtatgatttttcccactaaaaaagtgac
tttatctgagaagactttacttacatatttaggggatagtcatgaaaact
gcagctgacacaaatccatcctgcacaaacctagagcatacttctacaca
gtaatacaaatagattacaagtagagagatgagaaagagagggttttggg
tcaaagacagaatgctatgttgtttttttttttttttactgaactgaact
atttaaagacgaggctgtattgccaggcatggtggtacatgcctttaatc
ccagcacttgagaggcagaggcaggtggatttctgagttcgaggccagcc
tggtctacaaagtgagttccaggacagccagggctatacagagaaaccct
gtctcgaaaaaacaaaaacaaaacaaacaaacaaacaaaacaaacaaaca
aacaaaaagatgatgagggtgtacaaagtaaaatcatcaagaaatcaaat
attaataatcaaagagaaaaatagtgtacatagaacgtattccaggaggc
atctctgaaaatcactcactatcaacatcattattgaaattaaagagtag
ggctaggcagaaacctatgttcttaacctcacctatccagtgtttccgta
tgtctcaccaatgtgggagaactgggtgactacatgactatcttgtgtca
gtgctataaactcctatgattatcactgagtttcagtggattgtcttgat
tatattttcatcattagccatgtgccctctggctgtctagataacataaa
tatctatttgtgaatataaagcacttttcattattttctctgagaaatta
tctgtggatcacaacatcaccatagcgatagttgactcagatccaatcgt
ttacagtagtaatatcaattgtgactagtact
gaattctcacctgaggaatacagaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgcttgcgaggatgtggagaaagaggaacactcctccattgttggtg
gattgcaagcttgtacaaccactgaaaatcagtctggcggttactcagaa
aattggacatagtactacaggaggatcccgcaatacctctcctgggcata
tatccagaagatgtcccaaccggtaagaagaacacatactccactatgtt
cttagcagccttatttataatagccagaagctggaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggaa
tactactcagctattaaaaaaaatgaatttatgaaattcctaggcaaatg
gatggacctggagggtatcatcctgagtgaaataacccaatcacaaagga
agtcgcacaatatgtactcactgataagtggatattagcccagaaaccta
ggatacccaagatataagatacaacttgccaaacgcatgaaattcaagaa
gaacgaagaccaaagtgtggacactctaccctttcttagaaatgggaaca
aaacacccatagaaggagttacagagacaaaatttggagctgtgatgaaa
ggatggaccatctagtgattgccatatgcagggatccatcccataattag
cttccaaatgctgacaccattgcatacactagtaagattttgctgaaagg
acccagatatagctctctcttgtgagactatgccggggcctatcaaacac
agaagtggatgatcacagtcagctattgggtgggtcacatggctccttat
ggaggagctagagaaattacccaaggagctaaagggaactgcaaccctat
agtggacacaatatgaactaaccagtacccgggagctcttgtctttagct
gcaaatgtatcaaagaatggcctagtcgtcatcctgcaagaaagtcaatg
gaacttgccagttatatatgtcccagtatcaggaaccaaaggcccaaaag
gcagtgggtgtgagagggacatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66481115_66482213
seq2: B6Ng01-060G18.b_39_1120 (reverse)

seq1  AGTACTAGTTTCACAATTTGATATTAACCTACTGGTAAAAACGATTTGTA  50
      ||||||||  |||||| |||||||||  ||||||    |||||| ||| |
seq2  AGTACTAG--TCACAA-TTGATATTA--CTACTG---TAAACGA-TTGGA  41

seq1  TCTGAGTTCAACTATTCTGCTATGGTGATGTTTGTTGATCCACAGATAAA  100
      |||||| ||||||||   ||||||||||||||   |||||||||||| ||
seq2  TCTGAG-TCAACTAT--CGCTATGGTGATGTT--GTGATCCACAGAT-AA  85

seq1  TTTCTCAGAGAAAATAATGAAAAGTGCTTTATATTCACAAATAGATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGAGAAAATAATGAAAAGTGCTTTATATTCACAAATAGATATTT  135

seq1  ATGTTATCTAGACAGCCCAGAGGGCACATGGCTAATGATGAAAATATAAT  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGTTATCTAGACAG-CCAGAGGGCACATGGCTAATGATGAAAATATAAT  184

seq1  CAAGACAATCCACTGAAACTCAGTGATAATCATAGGAGTTTATAGCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAGACAATCCACTGAAACTCAGTGATAATCATAGGAGTTTATAGCA-CT  233

seq1  GACACAAGATAGTCATGTAGTCACCCAGTTCTCCCACATTGGTGAGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAGATAGTCATGTAGTCACCCAGTTCTCCCACATTGGTGAGACAT  283

seq1  ACGGAAACACTGGATAGGTGAGGTTAAGAACATAGGTTTCTGCCTAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAACACTGGATAGGTGAGGTTAAGAACATAGGTTTCTGCCTAGCCC  333

seq1  TACTCTTTAATTTCAATAATGATGTTGATAGTGAGTGATTTTCAGAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTAATTTCAATAATGATGTTGATAGTGAGTGATTTTCAGAGATG  383

seq1  CCTCCTGGAATACGTTCTATGTACACTATTTTTCTCTTTGATTATTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGAATACGTTCTATGTACACTATTTTTCTCTTTGATTATTAATA  433

seq1  TTTGATTTCTTGATGATTTTACTTTGTACACCCTCATCATCTTTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTCTTGATGATTTTACTTTGTACACCCTCATCATCTTTTTGTTT  483

seq1  GTTTGTTTGTTTTGTTTGTTTGTTTGTTTTGTTTTTGTTTTTTCGAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTTGTTTGTTTGTTTGTTTTGTTTTTGTTTTTTCGAGACA  533

seq1  GGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAG  583

seq1  GCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCTCAAGTGCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCTCAAGTGCTGGG  633

seq1  ATTAAAGGCATGTACCACCATGCCTGGCAATACAGCCTCGTCTTTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGCATGTACCACCATGCCTGGCAATACAGCCTCGTCTTTAAATA  683

seq1  GTTCAGTTCAGTAAAAAAAAAAAAAAACAACATAGCATTCTGTCTTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTCAGTAAAAAAAAAAAAAAACAACATAGCATTCTGTCTTTGAC  733

seq1  CCAAAACCCTCTCTTTCTCATCTCTCTACTTGTAATCTATTTGTATTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCCTCTCTTTCTCATCTCTCTACTTGTAATCTATTTGTATTACT  783

seq1  GTGTAGAAGTATGCTCTAGGTTTGTGCAGGATGGATTTGTGTCAGCTGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAAGTATGCTCTAGGTTTGTGCAGGATGGATTTGTGTCAGCTGCA  833

seq1  GTTTTCATGACTATCCCCTAAATATGTAAGTAAAGTCTTCTCAGATAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATGACTATCCCCTAAATATGTAAGTAAAGTCTTCTCAGATAAAG  883

seq1  TCACTTTTTTAGTGGGAAAAATCATACTTTAATTAATCTCAAGCAGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTTTAGTGGGAAAAATCATACTTTAATTAATCTCAAGCAGTTTG  933

seq1  CTTCCCACGGATCACAAAGAAATAGTATAGATATTTCTCTCCCTCCACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCACGGATCACAAAGAAATAGTATAGATATTTCTCTCCCTCCACAC  983

seq1  CTTATAATTGCTCAAAAATGAAGGCAAGTTTGTTCTGGATGCTAAATATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAATTGCTCAAAAATGAAGGCAAGTTTGTTCTGGATGCTAAATATG  1033

seq1  AGTCTCTTGTTTCCACAAGAATGAAAGAATGATCCAGTGTGCAGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTGTTTCCACAAGAATGAAAGAATGATCCAGTGTGCAGAATTC  1082