BAC Information

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BAC

Clone NameB6Ng01-060J02
Chromosome4 (Build37)
Map Location 129,278,943 - 129,414,362
singlet/doubletdoublet
Overlap gene2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1
Upstream geneTlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2
Downstream geneLOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060J02.bB6Ng01-060J02.g
ACCDH881507DH881508
length1,088487
definitionDH881507|Mus musculus domesticus DNA, BAC clone: B6Ng01-060J02, 5' end.DH881508|Mus musculus domesticus DNA, BAC clone: B6Ng01-060J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,278,943 - 129,280,020)(129,413,870 - 129,414,362)
sequence
gaattctgtacagagagatgaagctggaggacatggagtgggctacttag
aaggggtaacactgtcactcaaggccttataccagcagggacgatgggaa
ctggccatgacgagggagagggcatttaaggcaatagagtacattgaatg
cgtttctctgtttgctctaaggggtcttcaaacacatgagcggtccctga
gcatttgtaaccatgccaacccccgtgggaaggtgcaagccagaacaggg
actctcgaactgggtaacaactggcaaggggtctgacaccagatatcctg
catatcagatacttacgtgacagtccataactgtagtaaaattacagttg
tgaagtggcaatgaaaataattttatggttggggggtccccacaacatga
ggaactggattaaagggtcgcagcattaggaaggttgagaactgggaaag
ccgttgcacacgcaggcagcccctgacaggtctctcctctttctagtacc
tgatgccctttctcctcaatcagagtggatcccttctctactacttgact
ttggcatcaacaggtgggtctctggctcgggtcttctctggggtggacgc
catattttacgaagggaacctgaaagaccttgcacctgtcaatgaggcag
agcaccggtttctggtccttctgtgggtcacagggccagtgaggcgagtc
agtgtgcagcggcggcggcagcaggaggctcattgtggtctcctaagtgg
tgatgtcctttatcatctgggaggagggggttttcctgatacgtttgctg
tgtgtttgatgggttgttttcattttctattagaatttatttttgtgtgt
gcacatgtgtcacagtgtgtgtttggtcagaggaacaggttttaggagta
aggttttccttgtgtcttgtagattctagtaaggagctgggaccatcagt
cctgatggcgaatgcttctccccactgagcggctagggctggccgggact
gtcctgtttgttgttttgggaaaatctaccttattctaacttgggacttg
gcttccagtttctcagcctctgtcccaagtgctagggg
tgaggagcgtagtgatatgtatgtatatatctatgtatttttgagaagga
atgtagaatttgaacatagacacacttctgtatgccaaattgatgttcag
ctgcagcgaaacaatgcaaatgtgcaaagacacagttacctacccatgct
agactttttttttttgtttttgtttttttcaagacagggtttctctgtat
agccctggctgtcctggaactcactctgtagaccaggctggcctcgaact
cagaaatccgcctgcctctgcctccgcctcccaagtgctggggttaaagg
cctgtgccaccactgcctggcaaagatttttttttttttttaacctgtgt
tttgcattttgtaaactgattccaactagattttgttttctgtcttgaag
gcctggaatgtagttctgaagtagaaggcttgtttgccatattcaagagc
ctgtgcttttggggggacttgggggggggttaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129278943_129280020
seq2: B6Ng01-060J02.b_49_1135

seq1  GAATTCTGTACAGAGAGATGAAGCTGGAGGACATGGAGTGGGCTACTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACAGAGAGATGAAGCTGGAGGACATGGAGTGGGCTACTTAG  50

seq1  AAGGGGTAACACTGTCACTCAAGGCCTTATACCAGCAGGGACGATGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTAACACTGTCACTCAAGGCCTTATACCAGCAGGGACGATGGGAA  100

seq1  CTGGCCATGACGAGGGAGAGGGCATTTAAGGCAATAGAGTACATTGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATGACGAGGGAGAGGGCATTTAAGGCAATAGAGTACATTGAATG  150

seq1  CGTTTCTCTGTTTGCTCTAAGGGGTCTTCAAACACATGAGCGGTCCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCTCTGTTTGCTCTAAGGGGTCTTCAAACACATGAGCGGTCCCTGA  200

seq1  GCATTTGTAACCATGCCAACCCCCGTGGGAAGGTGCAAGCCAGAACAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTAACCATGCCAACCCCCGTGGGAAGGTGCAAGCCAGAACAGGG  250

seq1  ACTCTCGAACTGGGTAACAACTGGCAAGGGGTCTGACACCAGATATCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCGAACTGGGTAACAACTGGCAAGGGGTCTGACACCAGATATCCTG  300

seq1  CATATCAGATACTTACGTGACAGTCCATAACTGTAGTAAAATTACAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGATACTTACGTGACAGTCCATAACTGTAGTAAAATTACAGTTG  350

seq1  TGAAGTGGCAATGAAAATAATTTTATGGTTGGGGGGTCCCCACAACATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGCAATGAAAATAATTTTATGGTTGGGGGGTCCCCACAACATGA  400

seq1  GGAACTGGATTAAAGGGTCGCAGCATTAGGAAGGTTGAGAACTGGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGATTAAAGGGTCGCAGCATTAGGAAGGTTGAGAACTGGGAAAG  450

seq1  CCGTTGCACACGCAGGCAGCCCCTGACAGGTCTCTCCTCTTTCTAGTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGCACACGCAGGCAGCCCCTGACAGGTCTCTCCTCTTTCTAGTACC  500

seq1  TGATGCCCTTTCTCCTCAATCAGAGTGGATCCCTTCTCTACTACTTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCTTTCTCCTCAATCAGAGTGGATCCCTTCTCTACTACTTGACT  550

seq1  TTGGCATCAACAGGTGGGTCTCTGGCTCGGGTCTTCTCTGGGGTGGACGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATCAACAGGTGGGTCTCTGGCTCGGGTCTTCTCTGGGGTGGACGC  600

seq1  CATATTTTACGAAGGGAACCTGAAAGACCTTGCACCTGTCAATGAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTACGAAGGGAACCTGAAAGACCTTGCACCTGTCAATGAGGCAG  650

seq1  AGCACCGGTTTCTGGTCCTTCTGTGGGTCACAGGGCCAGTGAGGCGAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGGTTTCTGGTCCTTCTGTGGGTCACAGGGCCAGTGAGGCGAGTC  700

seq1  AGTGTGCAGCGGCGGCGGCAGCAGGAGGCTCATTGTGGTCTCCTAAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCAGCGGCGGCGGCAGCAGGAGGCTCATTGTGGTCTCCTAAGTGG  750

seq1  TGATGTCCTTTATCATCTGGGAGGAGGGGGTTTTCCTGATACGTTTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCCTTTATCATCTGGGAGGAGGGGGTTTTCCTGATACGTTTGCTG  800

seq1  TGTGTTTGAT-GGTTGTTTTCATTTTCTATTAGAATTTA-TTTTGTGTGT  848
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TGTGTTTGATGGGTTGTTTTCATTTTCTATTAGAATTTATTTTTGTGTGT  850

seq1  GCACATGTGTCACAGTGTGTGTTTGGTCAGAGG-ACAGGTTTTAGGAGT-  896
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  GCACATGTGTCACAGTGTGTGTTTGGTCAGAGGAACAGGTTTTAGGAGTA  900

seq1  AGGTTCTCCTTGTGTCTTGTAGATTCTAGTAAGGAGCTGGGACCATCAGT  946
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTCCTTGTGTCTTGTAGATTCTAGTAAGGAGCTGGGACCATCAGT  950

seq1  CCTGATGGCGAATGCCTCTCCCCACTGAGCGGCT-GGGCTGGCC-GGACT  994
      ||||||||||||||| |||||||||||||||||| ||||||||| |||||
seq2  CCTGATGGCGAATGCTTCTCCCCACTGAGCGGCTAGGGCTGGCCGGGACT  1000

seq1  GCCTTGTTTGTTGTTTTTGGGAGAGTCTCACT--ATCTAAC-TGGGAC-T  1040
      | | ||||||||| |||||||| | |||  ||   |||||| |||||| |
seq2  GTCCTGTTTGTTG-TTTTGGGAAAATCTACCTTATTCTAACTTGGGACTT  1049

seq1  GGCTTCCAAGTTCTCAGCCTCATGCCCAAGTGCTAGGG  1078
      ||||||||  |||||||||||   ||||||||||||||
seq2  GGCTTCCAGTTTCTCAGCCTCTGTCCCAAGTGCTAGGG  1087

seq1: chr4_129413870_129414362
seq2: B6Ng01-060J02.g_69_561 (reverse)

seq1  TCCCTTAACCCCCCCCCAAGTCCCCCCAAAAGCACAGGCTCTTGAATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAACCCCCCCCCAAGTCCCCCCAAAAGCACAGGCTCTTGAATATG  50

seq1  GCAAACAAGCCTTCTACTTCAGAACTACATTCCAGGCCTTCAAGACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAGCCTTCTACTTCAGAACTACATTCCAGGCCTTCAAGACAGAA  100

seq1  AACAAAATCTAGTTGGAATCAGTTTACAAAATGCAAAACACAGGTTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATCTAGTTGGAATCAGTTTACAAAATGCAAAACACAGGTTAAAA  150

seq1  AAAAAAAAAAATCTTTGCCAGGCAGTGGTGGCACAGGCCTTTAACCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAATCTTTGCCAGGCAGTGGTGGCACAGGCCTTTAACCCCAG  200

seq1  CACTTGGGAGGCGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGAGGCGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAG  250

seq1  CCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACC  300

seq1  CTGTCTTGAAAAAAACAAAAACAAAAAAAAAAAGTCTAGCATGGGTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGAAAAAAACAAAAACAAAAAAAAAAAGTCTAGCATGGGTAGGT  350

seq1  AACTGTGTCTTTGCACATTTGCATTGTTTCGCTGCAGCTGAACATCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTCTTTGCACATTTGCATTGTTTCGCTGCAGCTGAACATCAATT  400

seq1  TGGCATACAGAAGTGTGTCTATGTTCAAATTCTACATTCCTTCTCAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATACAGAAGTGTGTCTATGTTCAAATTCTACATTCCTTCTCAAAAA  450

seq1  TACATAGATATATACATACATATCACTACGCTCCTCAGAATTC  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGATATATACATACATATCACTACGCTCCTCAGAATTC  493