BAC Information

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BAC

Clone NameB6Ng01-060L07
Chromosome4 (Build37)
Map Location 145,304,105 - 145,415,662
singlet/doubletdoublet
Overlap geneLOC666351, LOC545704, 1700029I01Rik
Upstream geneLOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349
Downstream geneLOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060L07.bB6Ng01-060L07.g
ACCDH881605DH881606
length1,1741,056
definitionDH881605|Mus musculus domesticus DNA, BAC clone: B6Ng01-060L07, 5' end.DH881606|Mus musculus domesticus DNA, BAC clone: B6Ng01-060L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,304,105 - 145,305,305)(145,414,599 - 145,415,662)
sequence
gaattccaggaaagccagggctacacagaaaaccccagtcttgaaaaaca
aaaacaaaaacaaaaaacaaaacaacaacaacaaaccaaaaccaaaacaa
aacaaaacaaaaaaagcagccaggagatggcagcacatgcctttaatccc
aaaattcgggagtcagaggcaagcagaccttttgagtttgaggacaacct
ggtatatgcagcaaatctcagaacagccaaggctacacagagaaaccctg
tctagaagaaaaaaatcaataacaacaacaataataataaataaacaatt
ttaaaaagaaagtagtttatcttgccacttttgttataagatcttagcag
ttgtaaagagctaaacaactagctataagaacagtacgaagactatccaa
tgcccaagacgtttacagttagcctaatactgccacagtgaattatagat
cagcctgaaaagggacagtctcaggcagcataaacccgaggctcctggga
ctctgagagccagccatgtctgtgcagctgaaaacacagggaaaccagaa
gactgaaatggtaggcagagttcagttctcttgttctaggttctttagac
tgtaaatgaaaagaaaactcagttcagaattaatccactggatagggatt
tctagactatattgtagaattatagaactgaagagaaaaaaccaaaacag
tatggtaatatgaataggaatgtcccccataaggctcaaatatttgaatg
cttggtcattagggagtgccactacttaaagagattaggaggtatggcct
tgctggaggaagtgtgtcactaggggtggactttagggtttcagaagccc
aagccaggcccagtgactctctattttcccgatgcttgtggatctgaata
tagaactctcatttttcctgtaccacaatgtctttacacaggctaccatg
cttcctagccatgatgacatgaactaaactctaaactgtaagccagcaca
gttaattgctttctttttaagaatcgtatgatagtggtgttctcacagca
atagaaactgactaagaccctaggaagataaaatatagaacgtcattggt
ctccctaatattttcctccttcttctttttcctcttccaactttcttagc
atactactcatcttcccatctctc
gaattctgattggatgaggtggggtggagctagatgagatccaaagatgc
aaggataggagttttgttttttagcccgtgccctaagtagaagctagttg
tagtaagagaagctgttgtaaggggagttttataagaaaagctgcaagaa
ggagaacaagtaaagaagctgttgtgtgaacccaacttggtatccgtgtc
catgtcgttcgtgtctccgtgggcgcaaaggacagcagcacttttctact
ttataaaaagaagtaattaagataccttttttgatgcagatgaggttgaa
ggataattgttttctaaaagtgttatggagatgtgtctgaagatacgaat
tgctgctcttacactgaccaaaaagaatgtagatcatagaaaataagccc
tttagataacattctacatatagagattaaaacttttggatgacttgaat
aaaaagagatttttaaaaaaagaaatgtggaaaggacactgacctgtggt
gtatttaccagacacacactcattcttgttgttgtccttctcccagggtc
tctgtgaagaacaaagattgaattcttcatgaaatttcacatcaaggtct
gaataattcaaagatgaaataaatacaacaccattacagaaaatgctaaa
ccacattatatacataaaaaaaaaattaaagcaaaatgataccaggaatc
ttgacaatgtgcactcatgaaagtaagtaatgatatatttagactgtaac
tgtaacctagttcctgcccaccacccttgattctcaaagttaattcacaa
cacctgatatggaaatccctgccacctgacctaaatgacacacagcaaaa
gaaaattaagacgctggagctaaagcaatttgacatgttaataaattacc
atacccaaatcactaactcaataccattcctcatgacaataaatcatgaa
acaaacctcaagaggcaaagtcaaatataatctgaccatcattcaatgtg
gacaaatgacctaaagagggaacaagcccagaaattctagaaggcagacc
aactta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145304105_145305305
seq2: B6Ng01-060L07.b_48_1221

seq1  GAATTCCAGGAAAGCCAGGGCTACACAGAAAACCCCAGTCTTGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAAGCCAGGGCTACACAGAAAACCCCAGTCTTGAAAAACA  50

seq1  AAAACAAAAACAAAAAACAAAACAACAACAACAAACCAAAACCAAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAAAAAACAAAACAACAACAACAAACCAAAACCAAAACAA  100

seq1  AACAAAACAAAAAAAGCAGCCAGGAGATGGCAGCACATGCCTTTAATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAAAAGCAGCCAGGAGATGGCAGCACATGCCTTTAATCCC  150

seq1  AAAATTCGGGAGTCAGAGGCAAGCAGACCTTTTGAGTTTGAGGACAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCGGGAGTCAGAGGCAAGCAGACCTTTTGAGTTTGAGGACAACCT  200

seq1  GGTATATGCAGCAAATCTCAGAACAGCCAAGGCTACACAGAGAAACCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATGCAGCAAATCTCAGAACAGCCAAGGCTACACAGAGAAACCCTG  250

seq1  TCTAGAAGAAAAAAATCAATAACAACAACAATAATAATAAATAAACAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGAAAAAAATCAATAACAACAACAATAATAATAAATAAACAATT  300

seq1  TTAAAAAGAAAGTAGTTTATCTTGCCACTTTTGTTATAAGATCTTAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGAAAGTAGTTTATCTTGCCACTTTTGTTATAAGATCTTAGCAG  350

seq1  TTGTAAAGAGCTAAACAACTAGCTATAAGAACAGTACGAAGACTATCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGAGCTAAACAACTAGCTATAAGAACAGTACGAAGACTATCCAA  400

seq1  TGCCCAAGACGTTTACAGTTAGCCTAATACTGCCACAGTGAATTATAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGACGTTTACAGTTAGCCTAATACTGCCACAGTGAATTATAGAT  450

seq1  CAGCCTGAAAAGGGACAGTCTCAGGCAGCATAAACCCGAGGCTCCTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAAAAGGGACAGTCTCAGGCAGCATAAACCCGAGGCTCCTGGGA  500

seq1  CTCTGAGAGCCAGCCATGTCTGTGCAGCTGAAAACACAGGGAAACCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAGCCAGCCATGTCTGTGCAGCTGAAAACACAGGGAAACCAGAA  550

seq1  GACTGAAATGGTAGGCAGAGTTCAGTTCTCTTGTTCTAGGTTCTTTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAATGGTAGGCAGAGTTCAGTTCTCTTGTTCTAGGTTCTTTAGAC  600

seq1  TGTAAATGAAAAGAAAACTCAGTTCAGAATTAATCCACTGGATAGGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGAAAAGAAAACTCAGTTCAGAATTAATCCACTGGATAGGGATT  650

seq1  TCTAGACTATATTGTAGAATTATAGAACTGAAGAGAAAAAACCAAAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACTATATTGTAGAATTATAGAACTGAAGAGAAAAAACCAAAACAG  700

seq1  TATGGTAATATGAATAGGAATGTCCCCCATAAGGCTCAAATATTTGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTAATATGAATAGGAATGTCCCCCATAAGGCTCAAATATTTGAATG  750

seq1  CTTGGTCATTAGGGAGTGCCACTACTTAAAGAGATTAGGAGGTATGGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCATTAGGGAGTGCCACTACTTAAAGAGATTAGGAGGTATGGCCT  800

seq1  TGCTGGAGGAAGTGTGTCACTAGGGGTGGACTTTAGGGTTTCAGAAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGGAAGTGTGTCACTAGGGGTGGACTTTAGGGTTTCAGAAGCCC  850

seq1  AAGCCAGGCCCAGTGACTCTCTATTTTCCCGATGCTTGTGGATCTGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGCCCAGTGACTCTCTATTTTCCCGATGCTTGTGGATCTGAATA  900

seq1  TAGAACTCTCATTTTTCCTGTACCACAATGTCTTTACACAGGCTACCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTCTCATTTTTCCTGTACCACAATGTCTTTACACAGGCTACCATG  950

seq1  CTTCCTAGCCATGATGACAATGAACTAAACCTCTAAAACTGTAAGCCAGC  1000
      |||||||||||||||||| |||||||||| |||| |||||||||||||| 
seq2  CTTCCTAGCCATGATGAC-ATGAACTAAA-CTCT-AAACTGTAAGCCAG-  996

seq1  CACAGTTAAATGCTTTCCTTTTTAAGAATCGTTATGATAGTGGTGTTTCT  1050
      ||||||||| |||||| |||||||||||||| |||||||||||||||   
seq2  CACAGTTAATTGCTTT-CTTTTTAAGAATCG-TATGATAGTGGTGTT--C  1042

seq1  TCACAGCAATAGAACACTGACTAAGACACTTAGGAAGATTAAAATTATAG  1100
      |||||||||||||| |||||||||||| | |||||||||  ||| |||||
seq2  TCACAGCAATAGAA-ACTGACTAAGAC-CCTAGGAAGAT--AAAATATAG  1088

seq1  AAACGTCATTGGGTCTCCCTAATTATTTTTTCCTCCCTCCTTTCTTTTTC  1150
       ||||||||| ||||||||||   || ||||||||| ||  |||||||||
seq2  -AACGTCATT-GGTCTCCCTA---ATATTTTCCTCCTTC--TTCTTTTTC  1131

seq1  TCTCTTCCCAACTTTCCTTAGCCATACCTACTCTATCCTTCCTCATCTCT  1200
       ||||| |||||||| ||||| |||| |||||| || ||||| |||||||
seq2  -CTCTT-CCAACTTT-CTTAG-CATA-CTACTC-AT-CTTCC-CATCTCT  1173

seq1  C  1201
      |
seq2  C  1174

seq1: chr4_145414599_145415662
seq2: B6Ng01-060L07.g_68_1123 (reverse)

seq1  TAAGTTTGTTTCTGCCTTCTTTGAATTTCTGTGCTTGTTCCCTCTTTATG  50
      |||||| |  ||||||||| | ||||||||| |||||||||||||||| |
seq2  TAAGTTGG--TCTGCCTTC-TAGAATTTCTGGGCTTGTTCCCTCTTTAGG  47

seq1  TCATTTGTCCACATTGAATGGTGTTCAGATTATATTTTGACTTTTGCCTC  100
      |||||||||||||||||||| || |||||||||| |||||| ||||||||
seq2  TCATTTGTCCACATTGAATGATGGTCAGATTATA-TTTGAC-TTTGCCTC  95

seq1  TTG-TGTTTGTTTCATAATTTATTTGTCATGAGAATTGGTATTGAGTTAG  149
      |||  ||||||||||| ||||| |||||||||| | ||||||||||||||
seq2  TTGAGGTTTGTTTCATGATTTA-TTGTCATGAGGAATGGTATTGAGTTAG  144

seq1  TGATTTGTGGTATGGTAATTTTATTAACATTGTCAAATTGCTTTAGCTCC  199
      ||||||| |||||||||| |||||||||| ||||||||||||||||||||
seq2  TGATTTG-GGTATGGTAA-TTTATTAACA-TGTCAAATTGCTTTAGCTCC  191

seq1  AGCGTCTTAATTTTCTTTTGCTGTGTGTCATTTAGGTCAGGTGGCAGGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCTTAATTTTCTTTTGCTGTGTGTCATTTAGGTCAGGTGGCAGGGA  241

seq1  TTTCCATATCAGGTGTTGTGAATTAACTTTGAGAATCAAGGGTGGTGGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATATCAGGTGTTGTGAATTAACTTTGAGAATCAAGGGTGGTGGGC  291

seq1  AGGAACTAGGTTACAGTTACAGTCTAAATATATCATTACTTACTTTCATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTAGGTTACAGTTACAGTCTAAATATATCATTACTTACTTTCATG  341

seq1  AGTGCACATTGTCAAGATTCCTGGTATCATTTTGCTTTAATTTTTTTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACATTGTCAAGATTCCTGGTATCATTTTGCTTTAATTTTTTTTTT  391

seq1  AAGTATATAATGTGGTTTAGCATTTTCTGTAATGGTGTTGTATTTATTTC  449
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATAATGTGGTTTAGCATTTTCTGTAATGGTGTTGTATTTATTTC  441

seq1  ATCTTTGAATTATTCAGACCTTGATCTGAAATTTCAAGAAGAATTCAATC  499
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  ATCTTTGAATTATTCAGACCTTGATGTGAAATTTCATGAAGAATTCAATC  491

seq1  TTTGTTCTTCACAGAGACCCTGGGAGAAGGACAGCAACAAGAATGAGTGT  549
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTGTTCTTCACAGAGACCCTGGGAGAAGGACAACAACAAGAATGAGTGT  541

seq1  GTGTCTGGTAAATACACCACAGGTCAGTGTCCTTTCCACATTTCTTTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGTAAATACACCACAGGTCAGTGTCCTTTCCACATTTCTTTTTT  591

seq1  TAAAAATCTCTTTTTATTCAAGTCATCCAAAAGTTTTAATCTCTATATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTCTTTTTATTCAAGTCATCCAAAAGTTTTAATCTCTATATGT  641

seq1  AGAATGTTATCTAAAGGGCTTATTTTCTATGATCTACATTCTTTTTGGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTATCTAAAGGGCTTATTTTCTATGATCTACATTCTTTTTGGTC  691

seq1  AGTGTAAGAGCAGCAATTTGTATTTTCAGACACATCTCCATAACACTTTT  749
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  AGTGTAAGAGCAGCAATTCGTATCTTCAGACACATCTCCATAACACTTTT  741

seq1  AGAAAACAATTATCCTTCAACCTCATCTGCATCAAAAAAGGTATCTTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAATTATCCTTCAACCTCATCTGCATCAAAAAAGGTATCTTAAT  791

seq1  TACTTCTTTTTATAAAGTAGAAAAGTGCTGCTGTCCTCTGCGCCCACGGA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACTTCTTTTTATAAAGTAGAAAAGTGCTGCTGTCCTTTGCGCCCACGGA  841

seq1  GACAGGAACGACATGGACACGGATACCAAGTTGGGTTCACACAACAGCTT  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGAACGACATGGACACGGATACCAAGTTGGGTTCACACAACAGCTT  891

seq1  CTTTACTTGTTCTCCTTCTTGCAGCTTTTCTTATAAAACTCCCCTTACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTGTTCTCCTTCTTGCAGCTTTTCTTATAAAACTCCCCTTACAA  941

seq1  CAGCTTCTCTTACTACAACTAGCTTCTACTTAGGGCAAGGGCTAAAAAAC  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGCTTCTCTTACTACAACTAGCTTCTACTTAGGGCACGGGCTAAAAAAC  991

seq1  AAAACTCCTATCCTTGCATCTTTGGATCTCATCTAGCTCCACCCCACCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCTATCCTTGCATCTTTGGATCTCATCTAGCTCCACCCCACCTC  1041

seq1  ATCCAATCAGAATTC  1064
      |||||||||||||||
seq2  ATCCAATCAGAATTC  1056