BAC Information

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BAC

Clone NameB6Ng01-061C08
Chromosome4 (Build37)
Map Location 6,255,699 - 6,402,988
singlet/doubletdoublet
Overlap geneSdcbp, Nsmaf
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1
Downstream geneLOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061C08.bB6Ng01-061C08.g
ACCDH881903DH881904
length7611,100
definitionDH881903|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C08, 5' end.DH881904|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,255,699 - 6,256,457)(6,401,863 - 6,402,988)
sequence
gaattcagtactttcgagattttaatgatgaagttttaattttgaatttt
aattatgaatgaagtttgcatggaaactgtcagattttgttactctgcta
ggaaaaaatatttttacttggtctctttggatttttaaccttggagtgga
tttcttttgtaaagatcttaactggcacgtttacaatctcaagactttga
aatcacgtgtgtttgcttgtgtgagagaggggtggggtgggatgcaggta
ccacatgaggacaaagggcaattttcaggagtctatgctctcctgtcacg
tgggtactaggaacaaaattcagctttccatgctcggcaggcaggacctc
taccctctggctcaaaatctcaagtgtttagcatataaacatagatggca
gatgttctgctcacgtcaggcagagaaactgtgaaacacatgaaaggcta
agcctgctgcagaggtgaggccatccatcggggaatgcgaccccagaccc
tggaagggcgagaagccctctcccttctcaaaagaaaagaggggtttcca
gagaggacccgcaggagccttcttgtgtcagtcagtatgtatttgggatc
atacatgccagggcacatgcgtggaagtcagatgacagaccgtggaattt
ggttttatcttttctaacctgtgagtcctagggattgaactcggtcatta
ggcttggcagcaagcacctttcacctttagccctctcgctggccttgcct
ttttattcttg

gaattccaaccagtacatagaaagaaaaccattgactctggcccactgag
cttctcttttctttatctggtccccactcttcatagtatctgtacctctg
tatctggcccatccatcatcctatcctgatcagagttctctcatatctga
gccaaatgatagtgaaccaactagtccaggggcactggacaggtgttaag
gactattaagacatatgaaaagctgttaaaaatcacaaatcatagtaatg
ataagatttttttttaacctttgacctggcttaaatgataagtttgaaat
aggatctcatgtatgttggcatcaaatgctatatagtcaagggtgactac
cctgtctgggttttatgtcacgttgacacaaactagagtcatctaagagt
aggaaacttcaattaagagaatgcctccataatatcagactgtaggtcaa
cctgtagggtattaataaattagtgactaatgtgagaggtcccaggccat
tgagggtggtgccattcctgacctggtgatctggggtgctataagaaagc
aagctcacaatctatgatgagcaagccagtaagcagtaaccttccatggc
ctctgcatcagcttctatctcgacattcctgccctaactgctcctgatga
tgaactgttatattgaagtgtgagtgaaataaatgatttcctttccagat
tgcttttggtaatgttgtttcaccacaacaaaaggaacttgaaatcctca
tggtccagcctcccactcttgagtgctgcaattacagatgtgcactattt
ggtttggacagtgtagggtactgggcacagatcttagagtaagctattca
aggatgcttgaccagtgagctacatcccaagccctggtgcttagactttc
acagaaaacactccgttagatcttattgtcttataaatagcaaaatggcg
tcctcttgagccagcatgactaagccaggacatattcctctccaatctct
ctgaagtgagaaaattatcttatgatccactgatgagtgtgtataagtct
cctgttctgaagcatcctttcgagcaggctgttgttgagcagaaatgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6255699_6256457
seq2: B6Ng01-061C08.b_47_806

seq1  GAATTCAGTACTTTCGAGATTTTAATGATGAAGTTTTAATTTTGAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACTTTCGAGATTTTAATGATGAAGTTTTAATTTTGAATTTT  50

seq1  AATTATGAATGAAGTTTGCATGGAAACTGTCAGATTTTGTTACTCTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGAATGAAGTTTGCATGGAAACTGTCAGATTTTGTTACTCTGCTA  100

seq1  GGAAAAAATATTTTTACTTGGTCTCTTTGGATTTTTAACCTTGGAGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATATTTTTACTTGGTCTCTTTGGATTTTTAACCTTGGAGTGGA  150

seq1  TTTCTTTTGTAAAGATCTTAACTGGCACGTTTACAATCTCAAGACTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGTAAAGATCTTAACTGGCACGTTTACAATCTCAAGACTTTGA  200

seq1  AATCACGTGTGTTTGCTTGTGTGAGAGAGGGGTGGGGTGGGATGCAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGTGTGTTTGCTTGTGTGAGAGAGGGGTGGGGTGGGATGCAGGTA  250

seq1  CCACATGAGGACAAAGGGCAATTTTCAGGAGTCTATGCTCTCCTGTCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGAGGACAAAGGGCAATTTTCAGGAGTCTATGCTCTCCTGTCACG  300

seq1  TGGGTACTAGGAACAAAATTCAGCTTTCCATGCTCGGCAGGCAGGACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACTAGGAACAAAATTCAGCTTTCCATGCTCGGCAGGCAGGACCTC  350

seq1  TACCCTCTGGCTCAAAATCTCAAGTGTTTAGCAGAGAAACATAGATGGCA  400
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  TACCCTCTGGCTCAAAATCTCAAGTGTTTAGCATATAAACATAGATGGCA  400

seq1  GATGTTCTGCGCACGTCAGGCAGAGAAACTGTGAAACACATGAAAGGCTA  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTGCTCACGTCAGGCAGAGAAACTGTGAAACACATGAAAGGCTA  450

seq1  AGCCTGCTGCAGAGGTGAGGCCATCCATCGGGGAATGCGACCCCAGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTGCAGAGGTGAGGCCATCCATCGGGGAATGCGACCCCAGACCC  500

seq1  TGGAAGGGCGAGAAGCCCTCTCCCTTCTCAAAAGAAAAGAGGGGTTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGCGAGAAGCCCTCTCCCTTCTCAAAAGAAAAGAGGGGTTTCCA  550

seq1  GAGAGGACCCGCAGGAGCCTTCTTGTGTCAGTCAGTATGTATTTGGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGACCCGCAGGAGCCTTCTTGTGTCAGTCAGTATGTATTTGGGATC  600

seq1  ATACATGCCAGGGCACATGCGTGGAAGTCAGATGACAGACCGTGGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCCAGGGCACATGCGTGGAAGTCAGATGACAGACCGTGGAATTT  650

seq1  GGTTTTATC-TTTCTAACCTGTGAGTCCTAGGGATTGAACTCAGGTCATT  699
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  GGTTTTATCTTTTCTAACCTGTGAGTCCTAGGGATTGAACTC-GGTCATT  699

seq1  AGGCTTGGCAGCAAGCACC-TTCACCTTTAGCCCTCTCGCTGGCCTTGCC  748
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGCTTGGCAGCAAGCACCTTTCACCTTTAGCCCTCTCGCTGGCCTTGCC  749

seq1  TTTTTATTCTT  759
      |||||||||||
seq2  TTTTTATTCTT  760


seq1: chr4_6401863_6402988
seq2: B6Ng01-061C08.g_68_1167 (reverse)

seq1  TTACATTTTCTTGCTACAAACAACAGCACTGCTCTAGAAAGGAGTGCTTT  50
      ||||||||   ||||   ||||||||| ||||||  ||||||| ||||| 
seq2  TTACATTT--CTGCT--CAACAACAGC-CTGCTC--GAAAGGA-TGCTT-  41

seq1  CAAGAACAGGGAGAACTTTATACAACACTCATCAGTGGGATCATAAAGAT  100
        |||||| |||||   |||||| |||||||||||| ||||||| |||||
seq2  -CAGAACA-GGAGA--CTTATAC-ACACTCATCAGT-GGATCAT-AAGAT  84

seq1  AATTTTCTCACCTTCAGAAGAGATTGGAAGAGGAATATGGTCCTGGCCTT  150
      |||||||||| |||||| ||||||||| |||||||||| ||||||| |||
seq2  AATTTTCTCA-CTTCAG-AGAGATTGG-AGAGGAATAT-GTCCTGG-CTT  129

seq1  AGTCATGCTGGCTTCAAGGGGACGCCATTTTTGCTTATTTATAAGACAAT  200
      |||||||||||| ||||| |||||||| |||||| |||||||||||||||
seq2  AGTCATGCTGGC-TCAAGAGGACGCCA-TTTTGC-TATTTATAAGACAAT  176

seq1  AAAGATCTAACGGAGTGTTTTCTGTGAAAGTCTAAAGCACCAGGGCTTGG  250
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  -AAGATCTAACGGAGTGTTTTCTGTGAAAGTCT-AAGCACCAGGGCTTGG  224

seq1  GATGTAGCTCACTGGTCAAGCATCCTTGAATAGCTTACTCTAAGATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGCTCACTGGTCAAGCATCCTTGAATAGCTTACTCTAAGATCTGT  274

seq1  GCCCAGTACCCTACACTGTCCAAACCAAATAGTGCACATCTGTAATTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTACCCTACACTGTCCAAACCAAATAGTGCACATCTGTAATTGCA  324

seq1  GCACTCAAGAGTGGGAGGCTGGACCATGAGGATTTCAAGTTCCTTTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAAGAGTGGGAGGCTGGACCATGAGGATTTCAAGTTCCTTTTGTT  374

seq1  GTGGTGAAACAACATTACCAAAAGCAATCTGGAAAGGAAATCATTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAAACAACATTACCAAAAGCAATCTGGAAAGGAAATCATTTATTT  424

seq1  CACTCACACTTCAATATAACAGTTCATCATCAGGAGCAGTTAGGGCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACACTTCAATATAACAGTTCATCATCAGGAGCAGTTAGGGCAGGA  474

seq1  ATGTCGAGATAGAAGCTGATGCAGAGGCCATGGAAGGTTACTGCTTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGAGATAGAAGCTGATGCAGAGGCCATGGAAGGTTACTGCTTACTG  524

seq1  GCTTGCTCATCATAGATTGTGAGCTTGCTTTCTTATAGCACCCCAGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCATCATAGATTGTGAGCTTGCTTTCTTATAGCACCCCAGATCA  574

seq1  CCAGGTCAGGAATGGCACCACCCTCAATGGCCTGGGACCTCTCACATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCAGGAATGGCACCACCCTCAATGGCCTGGGACCTCTCACATTAG  624

seq1  TCACTAATTTATTAATACCCTACAGGTTGACCTACAGTCTGATATTATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAATTTATTAATACCCTACAGGTTGACCTACAGTCTGATATTATGG  674

seq1  AGGCATTCTCTTAATTGAAGTTTCCTACTCTTAGATGACTCTAGTTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCTCTTAATTGAAGTTTCCTACTCTTAGATGACTCTAGTTTGTG  724

seq1  TCAACGTGACATAAAACCCAGACAGGGTAGTCACCCTTGACTATATAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGTGACATAAAACCCAGACAGGGTAGTCACCCTTGACTATATAGCA  774

seq1  TTTGATGCCAACATACATGAGATCCTATTTCAAACTTATCATTTAAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGCCAACATACATGAGATCCTATTTCAAACTTATCATTTAAGCCA  824

seq1  GGTCAAAGGTTAAAAAAAAATCTTATCATTACTATGATTTGTGATTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAGGTTAAAAAAAAATCTTATCATTACTATGATTTGTGATTTTTA  874

seq1  ACAGCTTTTCATATGTCTTAATAGTCCTTAACACCTGTCCAGTGCCCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTTCATATGTCTTAATAGTCCTTAACACCTGTCCAGTGCCCCTG  924

seq1  GACTAGTTGGTTCACTATCATTTGGCTCAGATATGAGAGAACTCTGATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTTGGTTCACTATCATTTGGCTCAGATATGAGAGAACTCTGATCA  974

seq1  GGATAGGATGATGGATGGGCCAGATACAGAGGTACAGATACTATGAAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGATGATGGATGGGCCAGATACAGAGGTACAGATACTATGAAGAG  1024

seq1  TGGGGACCAGATAAAGAAAAGAGAAGCTCAGTGGGCCAGAGTCAATGGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCAGATAAAGAAAAGAGAAGCTCAGTGGGCCAGAGTCAATGGTT  1074

seq1  TTCTTTCTATGTACTGGTTGGAATTC  1126
      ||||||||||||||||||||||||||
seq2  TTCTTTCTATGTACTGGTTGGAATTC  1100


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