BAC Information

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BAC

Clone NameB6Ng01-061K09
Chromosome4 (Build37)
Map Location 58,884,845 - 58,998,336
singlet/doubletdoublet
Overlap geneAI314180, LOC100041581, Ltb4dh
Upstream geneAkap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711, Olfr267
Downstream gene2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061K09.bB6Ng01-061K09.g
ACCDH882264DH882265
length8881,059
definitionDH882264|Mus musculus domesticus DNA, BAC clone: B6Ng01-061K09, 5' end.DH882265|Mus musculus domesticus DNA, BAC clone: B6Ng01-061K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,884,845 - 58,885,744)(58,997,267 - 58,998,336)
sequence
gaattccaaaataattacatactgatttctgttcttccctgaggtgcctg
atgacagacacagggaggcaccttctctgtagagcaccagtcatttttaa
aagctgctcagagaacatctgtgtcctgtttaaatccagaataaaattct
taatgccaattttaaaaccccaagaagaaatataaaagggagtcatgctt
ttccccacattgtcacttgtgaagtatagaggttcctcactttacacaaa
atgtacagccctaaaatattgaataatgaaagataaattgtattttaact
gcatcaaaggaactacataattaagacctatagttataaattaaaatgag
agaaaactaaatttgctcaatataaaataggttgtgcatagtacttgaaa
gatgtgaacactgttagaaagacatacgctcatttcccactccccccatc
cctagggctttaacaaataaatgacagaggaaaagaatttgctcctttcc
aacatactctttagagaacttgaaattacaggaattgctctgcacatgct
tccatgaacttcacaggggcaagagttcatggtcagtactcctataaaga
gcagctgtgatgatacctgttccaactgttcaggtgtccacgggttgtca
ccaataactcgtttagctgcataaaagctcattcctgggggaggctgtgg
gattccagaacctcccccactgtttgaagagaaccctgtgatgatgatga
tgatttggcgactctgggattcatttaccacatatctgaaagaaataaaa
ctttactctctataaaagcatgtgattggtgtatatcttcccatatataa
taaaacctcactctgtcgtgacaggatttgctagagct
gaattcactggggtcccacgtgatgatgggttggtctgggtttctaaccc
ttgaaagcactagctcctttgtctgttggttttgcctggaggcaagatga
aaccaaataattgatttccaccttggagccaaaaccagagaaaattagat
ggagccgctgcgccccctagtggctatgaggtccatgcttctgtaggaaa
aagacaaaacaaacctgtggtctttggttctctgtatttgaggctttcct
gaggagtcacagcaggagaggtgaggaactgcaggactttgcacgtccat
tagttgtttaatgttctagagaaattccagcatggcccggacagaatttt
ccaggttacatttttctttgctttgagtgtttgttttagcctgtttccgc
atctacacacctgagtcttgacaggaaaatcatgggaataaaatgagatc
agacacgtgaagtgcttagcataatgccagaaagttctcaatgaatgtaa
tagaatgataatatgctaaatgataatagggctatgtttcccagcttcag
tgctatgcccaggggctctaagatggtcattgagtccacgtttaccatgt
tctaggtataccaggatggtgcaggccaagagctggaccctgaagaagca
cttcgaaggcttccctacggacggtaacttcgagttgaagacgactgagc
tcccacccttaaataatggaggtaagggagatcttagtgggggctgcaac
agtttgcatctgctgcagaaagagagtcccgccatttgacttcagacaat
agtttttttttttttaattagtttacagttctctgtgttagcagtttgac
tagtataaaagtctcattgtcattcctaaggatagcagcttcctgccgct
cagcctgccgttcgggagtcagatggggttccttccctgcagtgtgttct
tgtgtggatctagaacagcctgggttggcaaactccaagttgagaaactt
tcaagcctgcacttatgatacttttctaaaatccataaatctaagtagtg
tccaagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58884845_58885744
seq2: B6Ng01-061K09.b_48_935

seq1  GAATTCCAAAATAATTACATACTGATTTCTGTTCTTCCCTGAGGTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATAATTACATACTGATTTCTGTTCTTCCCTGAGGTGCCTG  50

seq1  ATGACAGACACAGGGAGGCACCTTCTCTGTAGAGCACCAGTCATTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGACACAGGGAGGCACCTTCTCTGTAGAGCACCAGTCATTTTTAA  100

seq1  AAGCTGCTCAGAGAACATCTGTGTCCTGTTTAAATCCAGAATAAAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTCAGAGAACATCTGTGTCCTGTTTAAATCCAGAATAAAATTCT  150

seq1  TAATGCCAATTTTAAAACCCCAAGAAGAAATATAAAAGGGAGTCATGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAATTTTAAAACCCCAAGAAGAAATATAAAAGGGAGTCATGCTT  200

seq1  TTCCCCACATTGTCACTTGTGAAGTATAGAGGTTCCTCACTTTACACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACATTGTCACTTGTGAAGTATAGAGGTTCCTCACTTTACACAAA  250

seq1  ATGTACAGCCCTAAAATATTGAATAATGAAAGATAAATTGTATTTTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGCCCTAAAATATTGAATAATGAAAGATAAATTGTATTTTAACT  300

seq1  GCATCAAAGGAACTACATAATTAAGACCTATAGTTATAAATTAAAATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAAGGAACTACATAATTAAGACCTATAGTTATAAATTAAAATGAG  350

seq1  AGAAAACTAAATTTGCTCAATATAAAATAGGTTGTGCATAGTACTTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTAAATTTGCTCAATATAAAATAGGTTGTGCATAGTACTTGAAA  400

seq1  GATGTGAACACTGTTAGAAAGACATACGCTCATTTCCCACTCCCCCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAACACTGTTAGAAAGACATACGCTCATTTCCCACTCCCCCCATC  450

seq1  CCTAGGGCTTTAACAAATAAATGACAGAGGAAAAGAATTTGCTCCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGCTTTAACAAATAAATGACAGAGGAAAAGAATTTGCTCCTTTCC  500

seq1  AACATACTCTTTAGAGAACTTGAAATTACAGGAATTGCTCTGCACATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACTCTTTAGAGAACTTGAAATTACAGGAATTGCTCTGCACATGCT  550

seq1  TCCATGAACTTCACAGGGGCAAGAGTTCAGGGTCAGTACTCCTATAAAGA  600
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCATGAACTTCACAGGGGCAAGAGTTCATGGTCAGTACTCCTATAAAGA  600

seq1  GCAGCTGTGATGATACCTGTTCCAACTGTTCAGGTGTCCACGGGTTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGTGATGATACCTGTTCCAACTGTTCAGGTGTCCACGGGTTGTCA  650

seq1  CCAATAACTCGTTTAGCTGCATAAAAGCTCATTCCTGGGGGAGGCTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAACTCGTTTAGCTGCATAAAAGCTCATTCCTGGGGGAGGCTGTGG  700

seq1  GATTCCAGAACCTCCCCCACTGTTTGAAGAAGAACCCTGTGATGATGATG  750
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GATTCCAGAACCTCCCCCACTGTTTGAAG-AGAACCCTGTGATGATGATG  749

seq1  ATGAATTTTGGCGACTCTGGGATTCATTTAACACATATCTGAAAAGAAAA  800
      ||||  |||||||||||||||||||||||| |||||||||||||   |||
seq2  ATGA--TTTGGCGACTCTGGGATTCATTTACCACATATCTGAAA--GAAA  795

seq1  TAAAACTTTAACTCTCTATAAAAGCATGTGAATTTGTGTATATCTACACA  850
      ||||||||| |||||||||||||||||||| ||| |||||||||| | ||
seq2  TAAAACTTT-ACTCTCTATAAAAGCATGTG-ATTGGTGTATATCTTCCCA  843

seq1  TATATACATAAAACACTCACTCTGTCGTTGAACAGTATTATGCTAGAGCT  900
      |||||| ||||||| |||||||||||||   |||| ||| ||||||||||
seq2  TATATA-ATAAAAC-CTCACTCTGTCGT--GACAGGATT-TGCTAGAGCT  888

seq1: chr4_58997267_58998336
seq2: B6Ng01-061K09.g_69_1127 (reverse)

seq1  AATC-TGGACAACTTACTTAGATCTATGGGATTTTTAAGAAAAGTACTAT  49
      |||| ||||||   ||||||||| ||| |||||||  |||||||||  ||
seq2  AATCTTGGACA--CTACTTAGATTTAT-GGATTTT--AGAAAAGTATCAT  45

seq1  AAGTAGAAGCTTGAAAAGTTCTCAAACTTTGGAGTTTGCCAACCCCAGGC  99
      ||||  | ||||||||  |||||||   |||||||||||||| |||||||
seq2  AAGTGCAGGCTTGAAAGTTTCTCAA--CTTGGAGTTTGCCAA-CCCAGGC  92

seq1  TGTTCTAGATCCACCACAGAACCACACTGCAGGGAAGGAACCCAATCTGG  149
      ||||||||||||| ||||  | ||||||||||||||||||||| |||| |
seq2  TGTTCTAGATCCA-CACAAGAACACACTGCAGGGAAGGAACCCCATCT-G  140

seq1  CCTCCCGGAACGGCAGCCTGAGCCGCAGGAAGCCTGCTATCCTTA-GAAT  198
       ||||| ||||||||| |||||| |||||||| |||||||||||| ||||
seq2  ACTCCC-GAACGGCAGGCTGAGCGGCAGGAAG-CTGCTATCCTTAGGAAT  188

seq1  GACAATGAGACTTTTATACTAGTCAAACTGCTAACACAGAGAACTGTAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGAGACTTTTATACTAGTCAAACTGCTAACACAGAGAACTGTAAA  238

seq1  CTAATTAAAAAAAAAAAAACTATTGTCTGAAGTCAAATGGCGGGACTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAAAAAAAAAAAAACTATTGTCTGAAGTCAAATGGCGGGACTCTC  288

seq1  TTTTCTGCAGCAGATGCAAACTGTTGCAGCCCCCACTAAGATCTCCCTTA  348
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTCTGCAGCAGATGCAAACTGTTGCAGCCCCCACTAAGATCTCCCTTA  337

seq1  CCTCCATTATTTAAGGGTGGGAGCTCAGTCGTCTTCAACTCGAAGTTACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTATTTAAGGGTGGGAGCTCAGTCGTCTTCAACTCGAAGTTACC  387

seq1  GTCCGTAGGGAAGCCTTCGAAGTGCTTCTTCAGGGTCCAGCTCTTGGCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTAGGGAAGCCTTCGAAGTGCTTCTTCAGGGTCCAGCTCTTGGCCT  437

seq1  GCACCATCCTGGTATACCTAGAACATGGTAAACGTGGACTCAATGACCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATCCTGGTATACCTAGAACATGGTAAACGTGGACTCAATGACCAT  487

seq1  CTTAGAGCCCCTGGGCATAGCACTGAAGCTGGGAAACATAGCCCTATTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGCCCCTGGGCATAGCACTGAAGCTGGGAAACATAGCCCTATTAT  537

seq1  CATTTAGCATATTATCATTCTATTACATTCATTGAGAACTTTCTGGCATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGCATATTATCATTCTATTACATTCATTGAGAACTTTCTGGCATT  587

seq1  ATGCTAAGCACTTCACGTGTCTGATCTCATTTTATTCCCATGATTTTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGCACTTCACGTGTCTGATCTCATTTTATTCCCATGATTTTCCT  637

seq1  GTCAAGACTCAGGTGTGTAGATGCGGAAACAGGCTAAAACAAACACTCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGACTCAGGTGTGTAGATGCGGAAACAGGCTAAAACAAACACTCAA  687

seq1  AGCAAAGAAAAATGTAACCTGGAAAATTCTGTCCGGGCCATGCTGGAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGAAAAATGTAACCTGGAAAATTCTGTCCGGGCCATGCTGGAATT  737

seq1  TCTCTAGAACATTAAACAACTAATGGACGTGCAAAGTCCTGCAGTTCCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAACATTAAACAACTAATGGACGTGCAAAGTCCTGCAGTTCCTC  787

seq1  ACCTCTCCTGCTGTGACTCCTCAGGAAAGCCTCAAATACAGAGAACCAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCTGCTGTGACTCCTCAGGAAAGCCTCAAATACAGAGAACCAAA  837

seq1  GACCACAGGTTTGTTTTGTCTTTTTCCTACAGAAGCATGGACCTCATAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGGTTTGTTTTGTCTTTTTCCTACAGAAGCATGGACCTCATAGC  887

seq1  CACTAGGGGGCGCAGCGGCTCCATCTAATTTTCTCTGGTTTTGGCTCCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGGGGCGCAGCGGCTCCATCTAATTTTCTCTGGTTTTGGCTCCAA  937

seq1  GGTGGAAATCAATTATTTGGTTTCATCTTGCCTCCAGGCAAAACCAACAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAATCAATTATTTGGTTTCATCTTGCCTCCAGGCAAAACCAACAG  987

seq1  ACAAAGGAGCTAGTGCTTTCAAGGGTTAGAAACCCAGACCAACCCATCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAGCTAGTGCTTTCAAGGGTTAGAAACCCAGACCAACCCATCAT  1037

seq1  CACGTGGGACCCCAGTGAATTC  1070
      ||||||||||||||||||||||
seq2  CACGTGGGACCCCAGTGAATTC  1059